EWM23487.1, cds7179 (CDS) Nannochloropsis gaditana

Overview
NameEWM23487.1
Unique Namecds7179
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:685030..685395 -
Alignment locationCM002470.1:684883..684951 -
Alignment locationCM002470.1:684084..684797 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23487.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100198g3.5729.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:685030..685395 -
CM002470.1supercontigCM002470.1:684883..684951 -
CM002470.1supercontigCM002470.1:684084..684797 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM23487.1 vs. NCBI_GenBank
Match: gi|585104557|gb|EWM23487.1| (hypothetical protein Naga_100198g3 [Nannochloropsis gaditana])

HSP 1 Score: 779.63 bits (2012), Expect = 0.000e+0
Identity = 382/382 (100.00%), Postives = 382/382 (100.00%), Query Frame = 0
Query:    1 MLRRRRKRLLSTSASILGLFVVVILLLLPTRAAALSRKQRILNWFAEASQGGGDQKANKAVEDEALAVNSLTSIMKSSGESLPGTIAPPPLLDQMLTLFASLGLPPDTLSHMSELTPEEIVHGLSTVMPTKTLHLRVGDEAVVDEATTLELTGVTDNRCPIGAQCITDGKATAMLTVRQEMIVPYKIEVGLGRAVLLQRGYEVSCEEITPRPGALVSSVLVSTSPSTELVEGSKTGAEQSEYRVRLRVALPTERMNGLVQGVLKWVKSNAMVRGYEFSQRRMCFCPQATIRPVRLDVSAWSQGVKGVYEDRPNGAVPPEALAEYKTVGDLFLLLTQAYALNADRVEASYDPVFGYPNRIYIDQSADMADDDVMYEASALKIK 382
            MLRRRRKRLLSTSASILGLFVVVILLLLPTRAAALSRKQRILNWFAEASQGGGDQKANKAVEDEALAVNSLTSIMKSSGESLPGTIAPPPLLDQMLTLFASLGLPPDTLSHMSELTPEEIVHGLSTVMPTKTLHLRVGDEAVVDEATTLELTGVTDNRCPIGAQCITDGKATAMLTVRQEMIVPYKIEVGLGRAVLLQRGYEVSCEEITPRPGALVSSVLVSTSPSTELVEGSKTGAEQSEYRVRLRVALPTERMNGLVQGVLKWVKSNAMVRGYEFSQRRMCFCPQATIRPVRLDVSAWSQGVKGVYEDRPNGAVPPEALAEYKTVGDLFLLLTQAYALNADRVEASYDPVFGYPNRIYIDQSADMADDDVMYEASALKIK
Sbjct:    1 MLRRRRKRLLSTSASILGLFVVVILLLLPTRAAALSRKQRILNWFAEASQGGGDQKANKAVEDEALAVNSLTSIMKSSGESLPGTIAPPPLLDQMLTLFASLGLPPDTLSHMSELTPEEIVHGLSTVMPTKTLHLRVGDEAVVDEATTLELTGVTDNRCPIGAQCITDGKATAMLTVRQEMIVPYKIEVGLGRAVLLQRGYEVSCEEITPRPGALVSSVLVSTSPSTELVEGSKTGAEQSEYRVRLRVALPTERMNGLVQGVLKWVKSNAMVRGYEFSQRRMCFCPQATIRPVRLDVSAWSQGVKGVYEDRPNGAVPPEALAEYKTVGDLFLLLTQAYALNADRVEASYDPVFGYPNRIYIDQSADMADDDVMYEASALKIK 382          
BLAST of EWM23487.1 vs. NCBI_GenBank
Match: gi|488796571|ref|WP_002708977.1| (hypothetical protein [Thiothrix nivea] >gi|386421230|gb|EIJ35065.1| hypothetical protein Thini_2522 [Thiothrix nivea DSM 5205])

HSP 1 Score: 72.0182 bits (175), Expect = 7.186e-11
Identity = 34/107 (31.78%), Postives = 62/107 (57.94%), Query Frame = 0
Query:  275 YEFSQRRMCFCPQATIRPVRLDVSAWS-QGVKGVYEDRPNGAVPPEALAEYKTVGDLFLLLTQAYALNADRVEASYDPVFGYPNRIYIDQSADMADDDVMYEASALK 380
            Y ++ +R CFCP+  ++P+ + V   S Q  + + E +P   +P     E   + DLF ++ +A    A  ++ +YDP++G+P  ++IDQ  +MAD+++ Y AS  K
Sbjct:  124 YTYTLQRSCFCPKDFLKPLEIRVFKNSVQQARIMPEGKP---LPKSRKGEALVIEDLFAVIHRAINSQAAAIDVTYDPLYGFPTTLFIDQDKNMADEEISYAASNFK 227          
BLAST of EWM23487.1 vs. NCBI_GenBank
Match: gi|1155017993|ref|WP_078923313.1| (hypothetical protein [Thiothrix eikelboomii] >gi|1152188896|emb|SKA87687.1| hypothetical protein SAMN02745130_02855 [Thiothrix eikelboomii])

HSP 1 Score: 71.2478 bits (173), Expect = 2.058e-10
Identity = 46/160 (28.75%), Postives = 77/160 (48.12%), Query Frame = 0
Query:  229 LVEGSKTGAEQSEYRVRLRVALPTERMNG-------LVQGVLKWVKSNAMVRGYEFSQRRMCFCPQATIRPVRLDVSAWSQGVKGVYEDRPNGAVPPEALAEYKTVGDLFLLLTQAYALNADRVEASYDPVFGYPNRIYIDQSADMADDDVMYEASALKI 381
            +V G  TG E + + +  +     +++NG        V    KW  + +  +   ++ +  CFCP+   RP+ +      + V   Y D    AVP        T+ + F  L  AY   A+R++A+YDP  GYP+ +YIDQS  MAD+++ Y    L++
Sbjct:  115 IVSGGITGGEITRHTLTQK---DIDQLNGKTDLPADFVASRAKWDAATSDGQTASYTAQSSCFCPEDYTRPMNI-TEQNGKIVDATYADTGE-AVPNYIRDGLLTMNERFDQLQDAYLSGAERIDATYDPQLGYPSSVYIDQSFMMADEEISYNIKDLEL 269          
BLAST of EWM23487.1 vs. NCBI_GenBank
Match: gi|1197737467|ref|WP_086687389.1| (hypothetical protein [Nostoc sp. T09] >gi|1196011809|gb|OUL33798.1| hypothetical protein BV372_15395 [Nostoc sp. T09])

HSP 1 Score: 66.2402 bits (160), Expect = 1.894e-9
Identity = 38/124 (30.65%), Postives = 58/124 (46.77%), Query Frame = 0
Query:  249 ALPTERMNGLVQGVLKWVKSNAMVRGYEFSQRRMCFCPQATIRPVRLDVSAWSQGVKGVYEDRPNGAVPPEALAEYKTVGDLFLLLTQAYALNADRVEASYDPVFGYPNRIYIDQSADMADDDV 372
            A+   ++N L      W K N  +R Y +   R CFC      P+ + V    +G K    D    +V  E   +Y T+  LF ++  A A  A  +   YDP  GYP +I ID ++ MAD+++
Sbjct:   34 AIAKSQLNQLTINRQLWKKQN--IRNYRYQLSRSCFCAPKASGPIVVKVR---KGKKTSITDAAGQSVDQEIFKQYDTIPKLFNVIEDAIAKKASNLTVQYDPKLGYPTQINIDYNSQMADEEI 152          
BLAST of EWM23487.1 vs. NCBI_GenBank
Match: gi|495552411|ref|WP_008276990.1| (hypothetical protein [Cyanothece sp. CCY0110] >gi|126619178|gb|EAZ89915.1| hypothetical protein CY0110_14003 [Cyanothece sp. CCY0110])

HSP 1 Score: 66.2402 bits (160), Expect = 2.051e-9
Identity = 33/108 (30.56%), Postives = 55/108 (50.93%), Query Frame = 0
Query:  272 VRGYEFSQRRMCFCPQATIRPVRLDVSAWSQGVKGVYEDRPNGAVPPEALAEYKTVGDLFLLLTQAYALNADRVEASYDPVFGYPNRIYIDQSADMADDDVMYEASAL 379
            ++ Y++  ++ CFCP  +  P++  VS  +  +  V     N  +    L   KT+ +LF ++  A   NAD +  +YDP  GYP R+ ID    +ADD++ Y    L
Sbjct:   51 LKNYQYIYQQQCFCPLPSNVPLK--VSVKNDKITQVVNLNNNQVITDLTLP--KTIEELFKIIKDAIQRNADEILITYDPTLGYPTRVAIDYQKILADDEITYTVKNL 154          
BLAST of EWM23487.1 vs. NCBI_GenBank
Match: gi|1210105532|dbj|BAY24662.1| (hypothetical protein NIES2100_44570 [Calothrix sp. NIES-2100])

HSP 1 Score: 66.2402 bits (160), Expect = 2.237e-9
Identity = 40/120 (33.33%), Postives = 57/120 (47.50%), Query Frame = 0
Query:  254 RMNGLVQGVLKWVKSNAMVRGYEFSQRRMCFCPQATIRPVRLDVSAWSQGVKGVYEDRPNGAVP-PEALAEYKTVGDLFLLLTQAYALNADRVEASYDPVFGYPNRIYIDQSADMADDDV 372
            ++N L      W K N  +R Y ++  R CFC   +  P+R+ V     G K    D        PE   EY TV  LF L+  A A  A  +   YDP  GYP +I ID ++ +AD+++
Sbjct:   39 QLNQLNANRRLWKKQN--IRNYRYTLSRSCFCAPKSTGPLRITVR---NGRKTSITDATGKPFEQPELFKEYDTVPKLFNLIEDAIAKKASNLTVQYDPKLGYPTQINIDYNSQIADEEL 153          
BLAST of EWM23487.1 vs. NCBI_GenBank
Match: gi|1201341825|ref|WP_087593281.1| (hypothetical protein [unicellular cyanobacterium SU3])

HSP 1 Score: 65.4698 bits (158), Expect = 3.145e-9
Identity = 33/108 (30.56%), Postives = 54/108 (50.00%), Query Frame = 0
Query:  272 VRGYEFSQRRMCFCPQATIRPVRLDVSAWSQGVKGVYEDRPNGAVPPEALAEYKTVGDLFLLLTQAYALNADRVEASYDPVFGYPNRIYIDQSADMADDDVMYEASAL 379
            +  Y++  ++ CFCP  +  P++  VS  +  +  V     N  +    L   KT+ +LF ++  A   NAD +  +YDP  GYP R+ ID    +ADD++ Y    L
Sbjct:   51 IENYQYIYQQRCFCPLPSNEPLK--VSVKNDKITQVVNLNNNQVITDLTLP--KTIEELFNIIKDAIQRNADEILITYDPTLGYPTRVEIDYQKILADDEITYTVKDL 154          
BLAST of EWM23487.1 vs. NCBI_GenBank
Match: gi|1210111815|dbj|BAY30943.1| (hypothetical protein NIES2107_27910 [Nostoc carneum NIES-2107])

HSP 1 Score: 64.6994 bits (156), Expect = 7.980e-9
Identity = 47/163 (28.83%), Postives = 74/163 (45.40%), Query Frame = 0
Query:  211 RPGALVSSVLVSTSPSTELVEG-SKTGAEQSEYRVRLRVALPTERMNGLVQGVLKWVKSNAMVRGYEFSQRRMCFCPQATIRPVRLDVSAWSQGVKGVYEDRPNGAVPPEALAEYKTVGDLFLLLTQAYALNADRVEASYDPVFGYPNRIYIDQSADMADDDV 372
            R G +VS+ LVST     L  G +K    QS  ++    A+    +    Q    W  S   +R Y +   R CFC +    PV ++V     G      D+    V PE   EY T+  +F ++  A A  A  +  +Y+   GYP ++ ID ++ MAD+++
Sbjct:    2 RLGIIVSAGLVSTG--LLLALGLNKPAISQSPTQIAQSSAIANTNLQEFRQNRRVW--SQQRIRNYRYKVSRSCFCTEEARGPVTIEVR---NGQTTSITDKNGKKVNPELFQEYSTLPKVFNVIRDAIAKKASSLNVNYNKKLGYPTQVNIDYNSQMADEEL 157          
BLAST of EWM23487.1 vs. NCBI_GenBank
Match: gi|1210089760|dbj|BAY08896.1| (hypothetical protein NIES2098_20570 [Calothrix sp. NIES-2098])

HSP 1 Score: 64.3142 bits (155), Expect = 1.023e-8
Identity = 37/116 (31.90%), Postives = 53/116 (45.69%), Query Frame = 0
Query:  265 WVKSNAMVRGYEFSQRRMCFCPQATIRPVRLDVSAWSQGVKGVYEDRPNGAVPPEALAEYKTVGDLFLLLTQAYALNADRVEASYDPVFGYPNRIYIDQSADMADDDVMYEASALK 380
            W K N  +R Y +   R CFC      PV + V    QG      D     +  E   +Y T+  LF ++  A A  A  +   YDP FGYP +I ID ++ MAD+++      L+
Sbjct:   50 WKKQN--IRNYRYKFSRSCFCAPKASGPVVVKVR---QGRTTSMTDAAGKPIERELFQQYDTIPKLFNVIEDAIAKKASSLTVQYDPKFGYPTQINIDYNSQMADEELYLTIEGLQ 160          
BLAST of EWM23487.1 vs. NCBI_GenBank
Match: gi|1210229608|dbj|BAZ48629.1| (hypothetical protein NIES4103_12370 [Nostoc sp. NIES-4103])

HSP 1 Score: 63.5438 bits (153), Expect = 1.793e-8
Identity = 37/111 (33.33%), Postives = 58/111 (52.25%), Query Frame = 0
Query:  272 VRGYEFSQRRMCFC-PQATIRPVRLDV-SAWSQGVKGVYEDRPNGAVPPEALAEYKTVGDLFLLLTQAYALNADRVEASYDPVFGYPNRIYIDQSADMADDDVMYEASALK 380
            +  Y ++  R CFC P+AT  PV ++V +  +  +  V   +P   V P+    Y TV  LF ++  A A  A  +   YDP FGYP  I ID ++ +ADD++ +    L+
Sbjct:   55 ISNYRYTFTRSCFCVPKAT-EPVVIEVRNGVTTSITSVETGQP---VDPKLFESYNTVPKLFNIIRDAIARRAANLTVKYDPKFGYPTEINIDYNSQIADDELFFTIQNLQ 161          
The following BLAST results are available for this feature:
BLAST of EWM23487.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104557|gb|EWM23487.1|0.000e+0100.00hypothetical protein Naga_100198g3 [Nannochloropsi... [more]
gi|488796571|ref|WP_002708977.1|7.186e-1131.78hypothetical protein [Thiothrix nivea] >gi|3864212... [more]
gi|1155017993|ref|WP_078923313.1|2.058e-1028.75hypothetical protein [Thiothrix eikelboomii] >gi|1... [more]
gi|1197737467|ref|WP_086687389.1|1.894e-930.65hypothetical protein [Nostoc sp. T09] >gi|11960118... [more]
gi|495552411|ref|WP_008276990.1|2.051e-930.56hypothetical protein [Cyanothece sp. CCY0110] >gi|... [more]
gi|1210105532|dbj|BAY24662.1|2.237e-933.33hypothetical protein NIES2100_44570 [Calothrix sp.... [more]
gi|1201341825|ref|WP_087593281.1|3.145e-930.56hypothetical protein [unicellular cyanobacterium S... [more]
gi|1210111815|dbj|BAY30943.1|7.980e-928.83hypothetical protein NIES2107_27910 [Nostoc carneu... [more]
gi|1210089760|dbj|BAY08896.1|1.023e-831.90hypothetical protein NIES2098_20570 [Calothrix sp.... [more]
gi|1210229608|dbj|BAZ48629.1|1.793e-833.33hypothetical protein NIES4103_12370 [Nostoc sp. NI... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7196rna7196Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications