rna7195, rna7195 (mRNA) Nannochloropsis gaditana

Overview
Namerna7195
Unique Namerna7195
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length504
Alignment locationCM002470.1:682035..683305 +

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Properties
Property NameValue
ProductHeat shock protein Hsp20
Orig transcript idgnl|cribi|Naga_100198g1.5727.mrna
Orig protein idgnl|cribi|Naga_100198g1.5727
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:682035..683305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100198g1gene6958Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7195rna7195-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23485.1cds7178Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7195 ID=rna7195|Name=rna7195|organism=Nannochloropsis gaditana|type=mRNA|length=504bp
ATGGTGCGACGCGTTCCCGTCACAAGCCCGCCATTTTCAGCAGTGCCTTC
TCAGCCGCCACCCAAGGGTAAGGCTCAAAGTCCAAGACCTTCTGCGCCAA
GGAATGTGGGAGAGAGCCTCACGCTTGCGGAGCGTAAAGCGGCGAGGGCC
ATCGTAGCGGCGTATTCCGATTTCTGGACGCAGCTTCGATTTCGCAAGGG
GTGGGCGGAACCGCCCTTCAAAAAACAAGACGTGTTGTGCCTGCTCGACG
AGGCGGCCGGAATCGTGGCCAAAACCAGGGCCGAGCTCGACAAGGAGGAG
GAGGGCTTTAAAATGCGCATGGTGGACGGCAGCGCCCGGGAGTTCTTTCA
CTCGGTACCTTACGCCCCACAAGACTATCCTGACCGCTTCGTCACGGACC
TCGTCCACGCCACCCTCCAAGATGGCCGGGGCTACGTGGAGGGTCTGACC
AAGAGTAGACGGCTACCTTCAGTCCTTCTCACAGGGACGCCTGCCCCCAT
CTGA
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protein sequence of rna7195

>rna7195-protein ID=rna7195-protein|Name=rna7195|organism=Nannochloropsis gaditana|type=polypeptide|length=352bp
MLLHGLSISPLLSFLPLVLLRVDPEGGRGRGCPQGSDQRPEQGRSSERVL
EELQGRCASFVKGLMHGLDVLDEMHVTEKDRPLRKSQVMQIQQLIDDVEQ
TKERLRGLRAELAAQQQEKEKEEEGKRREKGKEAGAAQGEEEGQGRAGQR
RSPPPPSRTPSLAHLASLLAPHWRQMKMRPRFESGSTPQAYVLAARLPNM
KLANLSVTLGARGESLIVKGFRGPTQEEVGSLVEAVRRSGRGGGREGVRL
EDLLAAGAERFGSFVETVRVPEDADADGVEATYEKGTLRIIIPRRPALPP
SFPPRPPPPVRPVYAPQQPALFHPSMGGYYQGVGGRRGMAPGGFWGDQDV
WW
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mRNA from alignment at CM002470.1:682035..683305+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7195 ID=rna7195|Name=rna7195|organism=Nannochloropsis gaditana|type=mRNA|length=1271bp|location=Sequence derived from alignment at CM002470.1:682035..683305+ (Nannochloropsis gaditana)
ATGCTTCTGCATGGACTCTCCATCTCACCTTtgttgtccttcctccctct
tgtcctccttcgaGTAGATCCAGAAGGTGGCCGAGGACGTGGATGCCCTC
AAGGCTCAGATCAGCGACCTGAACAAGTACGtagcctccctctcctcctc
cccgccctccctcccgccctccctcccctcggccGACAGCTCCGAGGGTC
GCTCCTCGGAGAGagtgctggaggagcttcAGGGGCGCTGTGCGAGCTTT
GTGAAGGGGCTGATGCACGGGCTCGACGTTCTGGACGAGATGCACGTGAC
GGAAAAGGTgcgctctctcctcttcctccttggaccctctctctctcctt
accccctcccgctccctttctccttcccgcacgCTTGTGACCGACCAAGC
GACGTGTGAAAATCACTGACTTTCGATTCTTGACGCCATCACCGCGCAGG
ACCGGCCCTTAAGGAAGAGTCAAGTGATGCAAATCCAGCAGCTGATCGAC
GACGTGGAGCAAACGAAGGAGCGCCTCCGCGGGCTCCGGGCCGAGCTGGC
AGCTCAacagcaggagaaggagaaggaggaggaagggaagaggagggaga
aggggaaggaagcgggcgcagcacagggagaggaggaggggcagggacgg
gccGGTCAACGccggtcgcctccccccccctcccgcacCCCCTCACTCGC
TcaccttgcctccctccttgccccgcACTGGCGGCAAATGAAAATGCGTC
CGCGCTTCGAGAGCGGCAGCACTCCGCAGGCCTACGTGCTGGCCGCCCGA
CTGCCCAACATGAAGCTCGCGAACCTGTCAGTGACGctgggagcgagggg
ggagtcTTTGATCGTCAAAGGCTTCCGGGGCCCaacgcaggaggaggtgg
gaagttTGGTAGAAGCGGTGCgacggagcgggagagggggggggagggag
ggcgtgaggcTGGAAGACCtgttggcggcgggggcggagcgCTTCGGTTC
CTTTGTGGAGACGGTGCGGGTGCCGGAGGACGCAGACGCGGATGGGGTAG
AAGCCACCTATGAGAAGGGGACGCTGCGGATCATCATCCCCCGCCGgcca
gccctccccccctccttccctccacgcccaccccctccggTCCGTCCTGT
CTACGCGCCTCAGCAGCcggccctcttccacccctcgATGGGGGGCTACT
ACCAAGGggtgggcgggcggagggggatggcgCCCGGAGGGTTTTGGGGA
GACCAGGATGTCTGGTGGTAA
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Coding sequence (CDS) from alignment at CM002470.1:682035..683305+

>rna7195 ID=rna7195|Name=rna7195|organism=Nannochloropsis gaditana|type=CDS|length=3177bp|location=Sequence derived from alignment at CM002470.1:682035..683305+ (Nannochloropsis gaditana)
ATGCTTCTGCATGGACTCTCCATCTCACCTTtgttgtccttcctccctct
tgtcctccttcgaGTAGATCCAGAAGGTGGCCGAGGACGTGGATGCCCTC
AAGGCTCAGATCAGCGACCTGAACAAGGTCGCTCCTCGGAGAGagtgctg
gaggagcttcAGGGGCGCTGTGCGAGCTTTGTGAAGGGGCTGATGCACGG
GCTCGACGTTCTGGACGAGATGCACGTGACGGAAAAGGACCGGCCCTTAA
GGAAGAGTCAAGTGATGCAAATCCAGCAGCTGATCGACGACGTGGAGCAA
ACGAAGGAGCGCCTCCGCGGGCTCCGGGCCGAGCTGGCAGCTCAacagca
ggagaaggagaaggaggaggaagggaagaggagggagaaggggaaggaag
cgggcgcagcacagggagaggaggaggggcagggacgggccGGTCAACGc
cggtcgcctccccccccctcccgcacCCCCTCACTCGCTcaccttgcctc
cctccttgccccgcACTGGCGGCAAATGAAAATGCGTCCGCGCTTCGAGA
GCGGCAGCACTCCGCAGGCCTACGTGCTGGCCGCCCGACTGCCCAACATG
AAGCTCGCGAACCTGTCAGTGACGctgggagcgaggggggagtcTTTGAT
CGTCAAAGGCTTCCGGGGCCCaacgcaggaggaggtgggaagttTGGTAG
AAGCGGTGCgacggagcgggagagggggggggagggagggcgtgaggcTG
GAAGACCtgttggcggcgggggcggagcgCTTCGGTTCCTTTGTGGAGAC
GGTGCGGGTGCCGGAGGACGCAGACGCGGATGGGGTAGAAGCCACCTATG
AGAAGGGGACGCTGCGGATCATCATCCCCCGCCGgccagccctccccccc
tccttccctccacgcccaccccctccggTCCGTCCTGTCTACGCGCCTCA
GCAGCcggccctcttccacccctcgATGGGGGGCTACTACCAAGGggtgg
gcgggcggagggggatggcgCCCGGAGGGTTTTGGGGAGACCAGGATGTC
TGGTGGTAAATGCTTCTGCATGGACTCTCCATCTCACCTTtgttgtcctt
cctccctcttgtcctccttcgaGTAGATCCAGAAGGTGGCCGAGGACGTG
GATGCCCTCAAGGCTCAGATCAGCGACCTGAACAAGGTCGCTCCTCGGAG
AGagtgctggaggagcttcAGGGGCGCTGTGCGAGCTTTGTGAAGGGGCT
GATGCACGGGCTCGACGTTCTGGACGAGATGCACGTGACGGAAAAGGACC
GGCCCTTAAGGAAGAGTCAAGTGATGCAAATCCAGCAGCTGATCGACGAC
GTGGAGCAAACGAAGGAGCGCCTCCGCGGGCTCCGGGCCGAGCTGGCAGC
TCAacagcaggagaaggagaaggaggaggaagggaagaggagggagaagg
ggaaggaagcgggcgcagcacagggagaggaggaggggcagggacgggcc
GGTCAACGccggtcgcctccccccccctcccgcacCCCCTCACTCGCTca
ccttgcctccctccttgccccgcACTGGCGGCAAATGAAAATGCGTCCGC
GCTTCGAGAGCGGCAGCACTCCGCAGGCCTACGTGCTGGCCGCCCGACTG
CCCAACATGAAGCTCGCGAACCTGTCAGTGACGctgggagcgagggggga
gtcTTTGATCGTCAAAGGCTTCCGGGGCCCaacgcaggaggaggtgggaa
gttTGGTAGAAGCGGTGCgacggagcgggagagggggggggagggagggc
gtgaggcTGGAAGACCtgttggcggcgggggcggagcgCTTCGGTTCCTT
TGTGGAGACGGTGCGGGTGCCGGAGGACGCAGACGCGGATGGGGTAGAAG
CCACCTATGAGAAGGGGACGCTGCGGATCATCATCCCCCGCCGgccagcc
ctccccccctccttccctccacgcccaccccctccggTCCGTCCTGTCTA
CGCGCCTCAGCAGCcggccctcttccacccctcgATGGGGGGCTACTACC
AAGGggtgggcgggcggagggggatggcgCCCGGAGGGTTTTGGGGAGAC
CAGGATGTCTGGTGGTAAATGCTTCTGCATGGACTCTCCATCTCACCTTt
gttgtccttcctccctcttgtcctccttcgaGTAGATCCAGAAGGTGGCC
GAGGACGTGGATGCCCTCAAGGCTCAGATCAGCGACCTGAACAAGGTCGC
TCCTCGGAGAGagtgctggaggagcttcAGGGGCGCTGTGCGAGCTTTGT
GAAGGGGCTGATGCACGGGCTCGACGTTCTGGACGAGATGCACGTGACGG
AAAAGGACCGGCCCTTAAGGAAGAGTCAAGTGATGCAAATCCAGCAGCTG
ATCGACGACGTGGAGCAAACGAAGGAGCGCCTCCGCGGGCTCCGGGCCGA
GCTGGCAGCTCAacagcaggagaaggagaaggaggaggaagggaagagga
gggagaaggggaaggaagcgggcgcagcacagggagaggaggaggggcag
ggacgggccGGTCAACGccggtcgcctccccccccctcccgcacCCCCTC
ACTCGCTcaccttgcctccctccttgccccgcACTGGCGGCAAATGAAAA
TGCGTCCGCGCTTCGAGAGCGGCAGCACTCCGCAGGCCTACGTGCTGGCC
GCCCGACTGCCCAACATGAAGCTCGCGAACCTGTCAGTGACGctgggagc
gaggggggagtcTTTGATCGTCAAAGGCTTCCGGGGCCCaacgcaggagg
aggtgggaagttTGGTAGAAGCGGTGCgacggagcgggagaggggggggg
agggagggcgtgaggcTGGAAGACCtgttggcggcgggggcggagcgCTT
CGGTTCCTTTGTGGAGACGGTGCGGGTGCCGGAGGACGCAGACGCGGATG
GGGTAGAAGCCACCTATGAGAAGGGGACGCTGCGGATCATCATCCCCCGC
CGgccagccctccccccctccttccctccacgcccaccccctccggTCCG
TCCTGTCTACGCGCCTCAGCAGCcggccctcttccacccctcgATGGGGG
GCTACTACCAAGGggtgggcgggcggagggggatggcgCCCGGAGGGTTT
TGGGGAGACCAGGATGTCTGGTGGTAA
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Synonyms
Publications