EWM23485.1, cds7178 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23485.1 vs. NCBI_GenBank
Match: gi|585104555|gb|EWM23485.1| (Heat shock protein Hsp20 [Nannochloropsis gaditana]) HSP 1 Score: 697.967 bits (1800), Expect = 0.000e+0 Identity = 352/352 (100.00%), Postives = 352/352 (100.00%), Query Frame = 0
Query: 1 MLLHGLSISPLLSFLPLVLLRVDPEGGRGRGCPQGSDQRPEQGRSSERVLEELQGRCASFVKGLMHGLDVLDEMHVTEKDRPLRKSQVMQIQQLIDDVEQTKERLRGLRAELAAQQQEKEKEEEGKRREKGKEAGAAQGEEEGQGRAGQRRSPPPPSRTPSLAHLASLLAPHWRQMKMRPRFESGSTPQAYVLAARLPNMKLANLSVTLGARGESLIVKGFRGPTQEEVGSLVEAVRRSGRGGGREGVRLEDLLAAGAERFGSFVETVRVPEDADADGVEATYEKGTLRIIIPRRPALPPSFPPRPPPPVRPVYAPQQPALFHPSMGGYYQGVGGRRGMAPGGFWGDQDVWW 352
MLLHGLSISPLLSFLPLVLLRVDPEGGRGRGCPQGSDQRPEQGRSSERVLEELQGRCASFVKGLMHGLDVLDEMHVTEKDRPLRKSQVMQIQQLIDDVEQTKERLRGLRAELAAQQQEKEKEEEGKRREKGKEAGAAQGEEEGQGRAGQRRSPPPPSRTPSLAHLASLLAPHWRQMKMRPRFESGSTPQAYVLAARLPNMKLANLSVTLGARGESLIVKGFRGPTQEEVGSLVEAVRRSGRGGGREGVRLEDLLAAGAERFGSFVETVRVPEDADADGVEATYEKGTLRIIIPRRPALPPSFPPRPPPPVRPVYAPQQPALFHPSMGGYYQGVGGRRGMAPGGFWGDQDVWW
Sbjct: 1 MLLHGLSISPLLSFLPLVLLRVDPEGGRGRGCPQGSDQRPEQGRSSERVLEELQGRCASFVKGLMHGLDVLDEMHVTEKDRPLRKSQVMQIQQLIDDVEQTKERLRGLRAELAAQQQEKEKEEEGKRREKGKEAGAAQGEEEGQGRAGQRRSPPPPSRTPSLAHLASLLAPHWRQMKMRPRFESGSTPQAYVLAARLPNMKLANLSVTLGARGESLIVKGFRGPTQEEVGSLVEAVRRSGRGGGREGVRLEDLLAAGAERFGSFVETVRVPEDADADGVEATYEKGTLRIIIPRRPALPPSFPPRPPPPVRPVYAPQQPALFHPSMGGYYQGVGGRRGMAPGGFWGDQDVWW 352
BLAST of EWM23485.1 vs. NCBI_GenBank
Match: gi|470509791|ref|XP_004367756.1| (BAG domain containing protein [Acanthamoeba castellanii str. Neff] >gi|440801666|gb|ELR22675.1| BAG domain containing protein [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 102.449 bits (254), Expect = 3.047e-20 Identity = 99/333 (29.73%), Postives = 158/333 (47.45%), Query Frame = 0
Query: 45 SSERVLEELQGRCASFVKGLMHGLDVLDEM---------HVTEKDRPLRKSQVMQIQQLIDDVEQTKERLRGLRAELAAQQQEKEKEEEGKRREKGKEAGAAQGEEEGQGRAGQRRSPPPPSRTPSLAHLASLLAPHWRQMKMRPRFESGSTPQAYVLAARLPNMKLANLSVTLGARGESLIVKGFRGPTQEEVGS----LVEAVRRSGRGGGR-EGVRLEDLL---AAGAERFGSFVETVRVPEDADADGVEATYEKGTLRIIIPRRP--------ALPPSFPPRPPPPVRPVYAPQQPALFHPSMGGYYQGVGGRRGMAPGGFWGDQDVWW 352
S+E++L +LQ +C + + LM L LD + +E+ RPLRK QV +IQ L+ DV+Q +L+ + ++ Q++++ KEE+ K+ E + A Q ++ + + A S WR +K++P+FE T + +L A +P M+ ++ + G++ VKG R PT E + L + R G +G + DLL AAG R+GSF ET V + D G+ A+Y G LRI +P +P +F P PP + Y ++ P GGY VGG+ GF+ D+ WW
Sbjct: 419 SAEKMLSKLQKQCLFYSENLMKDLLSLDAISTGTLPGSEEASEEVRPLRKQQVKEIQGLLQDVDQVNSKLKAMLKKV--QEEKQRKEEQRKKFEIDERAKQPQQPQQQPTTTTTATASATAAAEKDQAR--SEGVDMWRSLKLKPKFEMARTQDSIILQAHIPGMREEDIEIERDDDGQAFTVKGLRVPTPAEEAAMRRQLKSVLARDPWGLYYPQGEQERDLLLRMAAG--RYGSFSETFEVSPEMDLLGIAASYAGGVLRIAVPIKPHHQRQQRQGRKKAFYPHQQPPQQFPYQQRRRHGGRPHYGGYPADVGGQ------GFFNDKSFWW 739
BLAST of EWM23485.1 vs. NCBI_GenBank
Match: gi|1129186330|gb|OLP92502.1| (hypothetical protein AK812_SmicGene25666 [Symbiodinium microadriaticum]) HSP 1 Score: 92.0485 bits (227), Expect = 1.188e-16 Identity = 75/281 (26.69%), Postives = 130/281 (46.26%), Query Frame = 0
Query: 38 QRPEQGRSSERVLEELQGRCASFVKGLMHGLDVLDEMH-VTEKDRPLRKSQVMQIQQLIDDVEQTKERLRGLRAELAAQQQEKEKEEEGKRREKGKEAGAAQ---GEEEGQGRAGQRRSPPPPSRTPSLAHLASLLAPHWRQMKMRPRFESGSTPQAYVLAARLPNMKLANLSVTLGARGESLIVKGFRGPTQEE--------VGSLVEAVRRSGRGGGREGVRLEDLLA-----AGAERFGSFVETVRVPEDADADGVEATYEKGTLRIIIPRRP--ALP 299
+ E+ R+ + E + + +F + L+ + VLD + +T +DR LRK+ + ++ L+ +V+ K RL L +L + E +E ++ ++ E A + + A PPPP + W+Q+++ RF + YVL+A P + +L + L +L V+G R PTQ+E + E RS RL D+ A G ++G F E R+P D D + ++A+Y G LR+++P+RP ALP
Sbjct: 977 NQAEKLRAELVAVGEARKKARNFGEDLLEDMMVLDNLSKLTPEDRSLRKATIAGLEGLLQNVDTAKSRLATLHRKLEDNLKNLETKERERKEQEQLEQAAPEVLPAVSKPGAVAMSVLEPPPPDQD------------MWKQVRLPLRFHAREEDGQYVLSATAPGLCPDDLKLELNHDATTLKVEGLRLPTQKEEDKMRRRIAKKIRETAERSPEKFEVLAKRLPDVAADAYVELGQAQYGRFAEAFRLPHDVDVESIDASYTDGILRVVLPKRPRRALP 1245
BLAST of EWM23485.1 vs. NCBI_GenBank
Match: gi|167388549|ref|XP_001738606.1| (hypothetical protein [Entamoeba dispar SAW760] >gi|165898092|gb|EDR25062.1| hypothetical protein, conserved [Entamoeba dispar SAW760]) HSP 1 Score: 61.6178 bits (148), Expect = 6.590e-7 Identity = 32/134 (23.88%), Postives = 61/134 (45.52%), Query Frame = 0
Query: 173 WRQMKMRPRFESGSTPQAYVLAARLPNMKLANLSVTLGARGESLIVKGFRGPTQEEVGSLVEAVR-RSGRGGGREGVRLEDLLAAGAERFGSFVETVRVPEDADADGVEATYEKGTLRIIIPRRPALPPSFPPR 305
W +MKM +F+ ++ + +K ++ V + G L V G + P E+ ++ ++ R G + ++ G RFG+F + +PED D + Y++G L++ +PR+ S PR
Sbjct: 259 WSKMKMNVKFQVSDRGNNVIVYGTIAGLKDEDIDVNITKNG-YLKVSGVKKPNDNEMNMIIRTIKQRMGNISDEDIAKIAMKYCNG--RFGTFSQLYEIPEDIDIKNITVNYDEGILQVNLPRKQQTRRSMYPR 389 The following BLAST results are available for this feature:
BLAST of EWM23485.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|