EWM23485.1, cds7178 (CDS) Nannochloropsis gaditana

Overview
NameEWM23485.1
Unique Namecds7178
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:682035..682160 +
Alignment locationCM002470.1:682231..682341 +
Alignment locationCM002470.1:682484..683305 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23485.1
ProductHeat shock protein Hsp20
Orig transcript idgnl|cribi|Naga_100198g1.5727.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:682035..682160 +
CM002470.1supercontigCM002470.1:682231..682341 +
CM002470.1supercontigCM002470.1:682484..683305 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR008978HSP20-like_chaperone
IPR002068A-crystallin/Hsp20_dom
Homology
BLAST of EWM23485.1 vs. NCBI_GenBank
Match: gi|585104555|gb|EWM23485.1| (Heat shock protein Hsp20 [Nannochloropsis gaditana])

HSP 1 Score: 697.967 bits (1800), Expect = 0.000e+0
Identity = 352/352 (100.00%), Postives = 352/352 (100.00%), Query Frame = 0
Query:    1 MLLHGLSISPLLSFLPLVLLRVDPEGGRGRGCPQGSDQRPEQGRSSERVLEELQGRCASFVKGLMHGLDVLDEMHVTEKDRPLRKSQVMQIQQLIDDVEQTKERLRGLRAELAAQQQEKEKEEEGKRREKGKEAGAAQGEEEGQGRAGQRRSPPPPSRTPSLAHLASLLAPHWRQMKMRPRFESGSTPQAYVLAARLPNMKLANLSVTLGARGESLIVKGFRGPTQEEVGSLVEAVRRSGRGGGREGVRLEDLLAAGAERFGSFVETVRVPEDADADGVEATYEKGTLRIIIPRRPALPPSFPPRPPPPVRPVYAPQQPALFHPSMGGYYQGVGGRRGMAPGGFWGDQDVWW 352
            MLLHGLSISPLLSFLPLVLLRVDPEGGRGRGCPQGSDQRPEQGRSSERVLEELQGRCASFVKGLMHGLDVLDEMHVTEKDRPLRKSQVMQIQQLIDDVEQTKERLRGLRAELAAQQQEKEKEEEGKRREKGKEAGAAQGEEEGQGRAGQRRSPPPPSRTPSLAHLASLLAPHWRQMKMRPRFESGSTPQAYVLAARLPNMKLANLSVTLGARGESLIVKGFRGPTQEEVGSLVEAVRRSGRGGGREGVRLEDLLAAGAERFGSFVETVRVPEDADADGVEATYEKGTLRIIIPRRPALPPSFPPRPPPPVRPVYAPQQPALFHPSMGGYYQGVGGRRGMAPGGFWGDQDVWW
Sbjct:    1 MLLHGLSISPLLSFLPLVLLRVDPEGGRGRGCPQGSDQRPEQGRSSERVLEELQGRCASFVKGLMHGLDVLDEMHVTEKDRPLRKSQVMQIQQLIDDVEQTKERLRGLRAELAAQQQEKEKEEEGKRREKGKEAGAAQGEEEGQGRAGQRRSPPPPSRTPSLAHLASLLAPHWRQMKMRPRFESGSTPQAYVLAARLPNMKLANLSVTLGARGESLIVKGFRGPTQEEVGSLVEAVRRSGRGGGREGVRLEDLLAAGAERFGSFVETVRVPEDADADGVEATYEKGTLRIIIPRRPALPPSFPPRPPPPVRPVYAPQQPALFHPSMGGYYQGVGGRRGMAPGGFWGDQDVWW 352          
BLAST of EWM23485.1 vs. NCBI_GenBank
Match: gi|470509791|ref|XP_004367756.1| (BAG domain containing protein [Acanthamoeba castellanii str. Neff] >gi|440801666|gb|ELR22675.1| BAG domain containing protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 102.449 bits (254), Expect = 3.047e-20
Identity = 99/333 (29.73%), Postives = 158/333 (47.45%), Query Frame = 0
Query:   45 SSERVLEELQGRCASFVKGLMHGLDVLDEM---------HVTEKDRPLRKSQVMQIQQLIDDVEQTKERLRGLRAELAAQQQEKEKEEEGKRREKGKEAGAAQGEEEGQGRAGQRRSPPPPSRTPSLAHLASLLAPHWRQMKMRPRFESGSTPQAYVLAARLPNMKLANLSVTLGARGESLIVKGFRGPTQEEVGS----LVEAVRRSGRGGGR-EGVRLEDLL---AAGAERFGSFVETVRVPEDADADGVEATYEKGTLRIIIPRRP--------ALPPSFPPRPPPPVRPVYAPQQPALFHPSMGGYYQGVGGRRGMAPGGFWGDQDVWW 352
            S+E++L +LQ +C  + + LM  L  LD +           +E+ RPLRK QV +IQ L+ DV+Q   +L+ +  ++  Q++++ KEE+ K+ E  + A   Q  ++         +    +     A   S     WR +K++P+FE   T  + +L A +P M+  ++ +     G++  VKG R PT  E  +    L   + R   G    +G +  DLL   AAG  R+GSF ET  V  + D  G+ A+Y  G LRI +P +P            +F P   PP +  Y  ++     P  GGY   VGG+      GF+ D+  WW
Sbjct:  419 SAEKMLSKLQKQCLFYSENLMKDLLSLDAISTGTLPGSEEASEEVRPLRKQQVKEIQGLLQDVDQVNSKLKAMLKKV--QEEKQRKEEQRKKFEIDERAKQPQQPQQQPTTTTTATASATAAAEKDQAR--SEGVDMWRSLKLKPKFEMARTQDSIILQAHIPGMREEDIEIERDDDGQAFTVKGLRVPTPAEEAAMRRQLKSVLARDPWGLYYPQGEQERDLLLRMAAG--RYGSFSETFEVSPEMDLLGIAASYAGGVLRIAVPIKPHHQRQQRQGRKKAFYPHQQPPQQFPYQQRRRHGGRPHYGGYPADVGGQ------GFFNDKSFWW 739          
BLAST of EWM23485.1 vs. NCBI_GenBank
Match: gi|1129186330|gb|OLP92502.1| (hypothetical protein AK812_SmicGene25666 [Symbiodinium microadriaticum])

HSP 1 Score: 92.0485 bits (227), Expect = 1.188e-16
Identity = 75/281 (26.69%), Postives = 130/281 (46.26%), Query Frame = 0
Query:   38 QRPEQGRSSERVLEELQGRCASFVKGLMHGLDVLDEMH-VTEKDRPLRKSQVMQIQQLIDDVEQTKERLRGLRAELAAQQQEKEKEEEGKRREKGKEAGAAQ---GEEEGQGRAGQRRSPPPPSRTPSLAHLASLLAPHWRQMKMRPRFESGSTPQAYVLAARLPNMKLANLSVTLGARGESLIVKGFRGPTQEE--------VGSLVEAVRRSGRGGGREGVRLEDLLA-----AGAERFGSFVETVRVPEDADADGVEATYEKGTLRIIIPRRP--ALP 299
             + E+ R+    + E + +  +F + L+  + VLD +  +T +DR LRK+ +  ++ L+ +V+  K RL  L  +L    +  E +E  ++ ++  E  A +      +    A     PPPP +              W+Q+++  RF +      YVL+A  P +   +L + L     +L V+G R PTQ+E           + E   RS         RL D+ A      G  ++G F E  R+P D D + ++A+Y  G LR+++P+RP  ALP
Sbjct:  977 NQAEKLRAELVAVGEARKKARNFGEDLLEDMMVLDNLSKLTPEDRSLRKATIAGLEGLLQNVDTAKSRLATLHRKLEDNLKNLETKERERKEQEQLEQAAPEVLPAVSKPGAVAMSVLEPPPPDQD------------MWKQVRLPLRFHAREEDGQYVLSATAPGLCPDDLKLELNHDATTLKVEGLRLPTQKEEDKMRRRIAKKIRETAERSPEKFEVLAKRLPDVAADAYVELGQAQYGRFAEAFRLPHDVDVESIDASYTDGILRVVLPKRPRRALP 1245          
BLAST of EWM23485.1 vs. NCBI_GenBank
Match: gi|167388549|ref|XP_001738606.1| (hypothetical protein [Entamoeba dispar SAW760] >gi|165898092|gb|EDR25062.1| hypothetical protein, conserved [Entamoeba dispar SAW760])

HSP 1 Score: 61.6178 bits (148), Expect = 6.590e-7
Identity = 32/134 (23.88%), Postives = 61/134 (45.52%), Query Frame = 0
Query:  173 WRQMKMRPRFESGSTPQAYVLAARLPNMKLANLSVTLGARGESLIVKGFRGPTQEEVGSLVEAVR-RSGRGGGREGVRLEDLLAAGAERFGSFVETVRVPEDADADGVEATYEKGTLRIIIPRRPALPPSFPPR 305
            W +MKM  +F+        ++   +  +K  ++ V +   G  L V G + P   E+  ++  ++ R G     +  ++      G  RFG+F +   +PED D   +   Y++G L++ +PR+     S  PR
Sbjct:  259 WSKMKMNVKFQVSDRGNNVIVYGTIAGLKDEDIDVNITKNG-YLKVSGVKKPNDNEMNMIIRTIKQRMGNISDEDIAKIAMKYCNG--RFGTFSQLYEIPEDIDIKNITVNYDEGILQVNLPRKQQTRRSMYPR 389          
The following BLAST results are available for this feature:
BLAST of EWM23485.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585104555|gb|EWM23485.1|0.000e+0100.00Heat shock protein Hsp20 [Nannochloropsis gaditana... [more]
gi|470509791|ref|XP_004367756.1|3.047e-2029.73BAG domain containing protein [Acanthamoeba castel... [more]
gi|1129186330|gb|OLP92502.1|1.188e-1626.69hypothetical protein AK812_SmicGene25666 [Symbiodi... [more]
gi|167388549|ref|XP_001738606.1|6.590e-723.88hypothetical protein [Entamoeba dispar SAW760] >gi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7195rna7195Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications