rna7194, rna7194 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7194
Unique Name	rna7194
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1674
Alignment location	CM002470.1:679555..681043 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100414g1.7734.mrna
Orig protein id	gnl\|cribi\|Naga_100414g1.7734
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:679555..681043 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100414g1	gene6957	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7194	rna7194-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23499.1	cds7177	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:679555..681043+
coding sequence from alignment at CM002470.1:679555..681043+

mRNA sequence

>rna7194 ID=rna7194|Name=rna7194|organism=Nannochloropsis gaditana|type=mRNA|length=1674bp
ATGAAGAGCACAAATCAATTACGCTCTCCGCATTGCGCCATGACCATGCT
TTTACCACGTCCATGGCTCCGTAGCCTGCTGGTCTGGATCCTCTGGGTGG
GCACGGCGGCGGCATTCACACGTTTCGACAGGGCGAGGGCTCCCACATTC
CCCCGCCGTTTGACCACCCTGAGAGGGTTTTCTCCCGCGCCTCCGCCAAC
ACGCAGACTTGCTTCCGAGTCCGAGCAAGACCCTGTCCAGACAAGCAGAT
CCCATTCCCCTCTTCTAATTCCACTGGTTTTCCAAACTGTAAATCGGCTG
ACACTGCCACTTTGTAGCCTCGTCTGCAGCATCCTCCCGTCCTCAGCGCT
AGCTCTTTCTCTTCCTGCCTCCGCCGGAGCCACAGGCACGGCCACTTCAA
GCATTTATCAAGAAAGTAGCAGCAGAGGCACTGATATTGACACGACCCTC
CTCTCCTCTCCACGCATTGCTGCCCGCGGGAGCGGCCAAACCTATTCGCA
GGCCATGGCTTCGGCGGATGCTCGCCGGATCCACGACGTCAACAAGGCGT
TCGCCCGGCATGTATGGGCCACGATTGGACTCTCCTTCTACGACAAGAGC
GGCGGAGGGGTGCTCGGAGGACGGGGAGGACACGACCCGGGCTGGGAGCG
GGTGTGGGCGGCGGCGAATCGGCTGGGGGAGGGCGGGGCCGGGGGGGGAA
GGGGCTTCGACAGCGTGGAAGGGACGAGGGAGGTGATTCGCTTCATGGTG
CGGGAGCTGAAGGACGAGTACTCGGCCTACCTGGCCCCGCGGGAGATGAG
GGGGCTGAGCCGGTGGTCACCTCGGTCCTCGTATCGCCTCGACCGGATGT
CGTCTCCTACCGCCTCCCAGACGGGGACCTGGGGCCCAAGGAGCGCCCAG
ACGATCCGGAGCAGCAAGGAGGACAAGGCGGATGGCACAAGCTCCCTCAC
AGCTTCGGTGGGGATGCAGCTCGAGCCCGCCATCTACTGCCCGCCAGCCA
CCACGCTCCTGCCCCAGTACGACGCCCGCGCCGACGACGTACGCCTACCC
CTCCCTCCCGCCCTCCCCCTTCCCCCTGGGCTCCCCCCACCCGTACGCCC
GACCCTGTGCGGTGGTGGCGGGCGTGCTCCCGAACTCGCCGGCCGAGGAA
GCCGGGATCCGTATCGGCGACCGACTGAGTCGCATCGGGCACGTGCGGAC
GGAAAACGCCGGCTGGGACCGGGACGGGGCTCTGGAAAACACCTTGCTGC
AGGGCAGGGAGGGGACGTCGGTGCAGGTGGAGGTGTTGCGGAGCCTGGAG
GAGGGCGGGCGGGAGGAAGGGAAGGGGGGCCAGGGCCGGCGGGAGGTGCG
AGTGCCCTTGACCCTGCGTCGCCGCTCCTTCGCCGCCCACAAGTACCCGG
CCCTCCGGGTGCAATCCCTGCTCGACGCCGAGGGCCGACGCATCTCCTAC
ATCCGCCTGCATCGCTTCGACGCACAGGCCACGGACCAGCTCCGCTCGGT
TTTGTTCGCGGAGGAGCGTGTGGGCGCTGCCGGCTACGTGATCGACCTCC
GGAACAACATGGGCGGGGTCTTCCAAGAGGGCCTGAAGATGGCCACCCTC
TTCCTCCCCGACCCCAAGGCAGTGCTTTGCTTCACCATGGATGCCTGGGG
GGGCTACAGCCCCCACCTGGCTGA

protein sequence of rna7194

>rna7194-protein ID=rna7194-protein|Name=rna7194|organism=Nannochloropsis gaditana|type=polypeptide|length=167bp
MVRRVPVTSPPFSAVPSQPPPKGKAQSPRPSAPRNVGESLTLAERKAARA
IVAAYSDFWTQLRFRKGWAEPPFKKQDVLCLLDEAAGIVAKTRAELDKEE
EGFKMRMVDGSAREFFHSVPYAPQDYPDRFVTDLVHATLQDGRGYVEGLT
KSRRLPSVLLTGTPAPI

mRNA from alignment at CM002470.1:679555..681043+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7194 ID=rna7194|Name=rna7194|organism=Nannochloropsis gaditana|type=mRNA|length=1489bp|location=Sequence derived from alignment at CM002470.1:679555..681043+ (Nannochloropsis gaditana)
ATGGTGCGACGCGTTCCCGTCACAAGCCCGCCATTTTCAGCAGTGCCTTC
TCAGCCGCCACCCAAGGGTAAGGCTCAAAGTCCAAGACCTTCTGCGCCAA
GGAATGTGGGAGAGAGCCTCACGCTTGCGGAGCGTAAAGCGGCGAGGGCC
ATCGTAGCGGCGTATTCCGATTTCTGGACGCAGGTACGTCTGAACCAAGG
CATCAGAGGGATTCTGGAAGTAATTTAGGAAGTCTTTGGTATTCTGCTGC
CATGCTAGGGTCGAAATTAATCTTTGTCTGCGGGACACATACTGTCTACT
CTATTCGCTCGTAGAAGGAAGTTGCATACCAGCGGCTCCTACGTCTGACC
TTGCAACAAAATACGCTAGCACGCATTGATACTTTCTTATGCCCCCTGGT
CCACATCGCACCCTTTTCCCATTAAATAGCTTCGATTTCGCAAGGGGTGG
GCGGAACCGCCCTTCAAAAAACAAGACGTGTTGTGCCTGCTCGACGAGGC
GGCCGGAATCGTGGCCAAAACCAGGGCCGAGCTCGACAAGGAGGTAGGGG
GCTTGGGCGAGGGTGGGTCaggatgaagggaaggaatgcaggggggagcg
gggggggagatgcAGGTGCGAGGCGTCAGGGCGTCGGTGCGTGTGGAGCA
CAGCGATCCGGTGGTCCAGCTCCTTGTTTGATGCCGATCCACCGTGCCCG
TGGTGAGTCAGGCTCATTTCTTTGGTCAACTTCCCTCTTTATCTCATGCG
TGCATCTTTTcatggcaggaggagggctttaAAATGCGCATGGTGGACGG
CAGCGCCCGGGAGTTCTTTCACTCGGTACCTTACGCCCCACAAGACTATC
CTGGtagatgggggagggggggtgggaaggcgagggcaaggagggcggga
cgcagggagggaggaaggggggtggaggaaaggatgcacCCAAGGGGTAG
GGTTCGTCTCCGCGGGCCTCGTGCgtgccctcttcctccgtcgctctGTC
TTGTTCTCTCCTCAAACGCGTGAATTGAGCCCATCGGGGGGGATGCGTCC
TatgcctcctctgccgctCTAATATGTCCCCTTTCTGAGCCCATTGCCTC
CTGCTTGTGGCGGTTGCCGCCGTTCGCTTGCCATACTGCTCCCCtcaccc
cctcgccctctccctcccctcgaccccccgccctcagACCGCTTCGTCAC
ggacctcgtccacgccaCCCTCCAAGATGGCCGGGGCTACGTGGAGGGTC
TGACCAAGGTAGTCTACTcactctctctccctccctccctccctccctct
ttccctgccctctcccttcaaCTTCCTCTGCCGCCCGTTCTCACGCGCTC
GTcgaccctcttccttccctttctgtccgcctttccctccttccttcccg
cccgccctccctccctccctcccctcggtaCAGGCCAGAGTAGACGGCTA
CCTTCAGTCCTTCTCACAGGGACGCCTGCCCCCATCTGA

Coding sequence (CDS) from alignment at CM002470.1:679555..681043+

>rna7194 ID=rna7194|Name=rna7194|organism=Nannochloropsis gaditana|type=CDS|length=2520bp|location=Sequence derived from alignment at CM002470.1:679555..681043+ (Nannochloropsis gaditana)
ATGGTGCGACGCGTTCCCGTCACAAGCCCGCCATTTTCAGCAGTGCCTTC
TCAGCCGCCACCCAAGGGTAAGGCTCAAAGTCCAAGACCTTCTGCGCCAA
GGAATGTGGGAGAGAGCCTCACGCTTGCGGAGCGTAAAGCGGCGAGGGCC
ATCGTAGCGGCGTATTCCGATTTCTGGACGCAGCTTCGATTTCGCAAGGG
GTGGGCGGAACCGCCCTTCAAAAAACAAGACGTGTTGTGCCTGCTCGACG
AGGCGGCCGGAATCGTGGCCAAAACCAGGGCCGAGCTCGACAAGGAGgag
gagggctttaAAATGCGCATGGTGGACGGCAGCGCCCGGGAGTTCTTTCA
CTCGGTACCTTACGCCCCACAAGACTATCCTGACCGCTTCGTCACggacc
tcgtccacgccaCCCTCCAAGATGGCCGGGGCTACGTGGAGGGTCTGACC
AAGAGTAGACGGCTACCTTCAGTCCTTCTCACAGGGACGCCTGCCCCCAT
CTGAATGGTGCGACGCGTTCCCGTCACAAGCCCGCCATTTTCAGCAGTGC
CTTCTCAGCCGCCACCCAAGGGTAAGGCTCAAAGTCCAAGACCTTCTGCG
CCAAGGAATGTGGGAGAGAGCCTCACGCTTGCGGAGCGTAAAGCGGCGAG
GGCCATCGTAGCGGCGTATTCCGATTTCTGGACGCAGCTTCGATTTCGCA
AGGGGTGGGCGGAACCGCCCTTCAAAAAACAAGACGTGTTGTGCCTGCTC
GACGAGGCGGCCGGAATCGTGGCCAAAACCAGGGCCGAGCTCGACAAGGA
GgaggagggctttaAAATGCGCATGGTGGACGGCAGCGCCCGGGAGTTCT
TTCACTCGGTACCTTACGCCCCACAAGACTATCCTGACCGCTTCGTCACg
gacctcgtccacgccaCCCTCCAAGATGGCCGGGGCTACGTGGAGGGTCT
GACCAAGAGTAGACGGCTACCTTCAGTCCTTCTCACAGGGACGCCTGCCC
CCATCTGAATGGTGCGACGCGTTCCCGTCACAAGCCCGCCATTTTCAGCA
GTGCCTTCTCAGCCGCCACCCAAGGGTAAGGCTCAAAGTCCAAGACCTTC
TGCGCCAAGGAATGTGGGAGAGAGCCTCACGCTTGCGGAGCGTAAAGCGG
CGAGGGCCATCGTAGCGGCGTATTCCGATTTCTGGACGCAGCTTCGATTT
CGCAAGGGGTGGGCGGAACCGCCCTTCAAAAAACAAGACGTGTTGTGCCT
GCTCGACGAGGCGGCCGGAATCGTGGCCAAAACCAGGGCCGAGCTCGACA
AGGAGgaggagggctttaAAATGCGCATGGTGGACGGCAGCGCCCGGGAG
TTCTTTCACTCGGTACCTTACGCCCCACAAGACTATCCTGACCGCTTCGT
CACggacctcgtccacgccaCCCTCCAAGATGGCCGGGGCTACGTGGAGG
GTCTGACCAAGAGTAGACGGCTACCTTCAGTCCTTCTCACAGGGACGCCT
GCCCCCATCTGAATGGTGCGACGCGTTCCCGTCACAAGCCCGCCATTTTC
AGCAGTGCCTTCTCAGCCGCCACCCAAGGGTAAGGCTCAAAGTCCAAGAC
CTTCTGCGCCAAGGAATGTGGGAGAGAGCCTCACGCTTGCGGAGCGTAAA
GCGGCGAGGGCCATCGTAGCGGCGTATTCCGATTTCTGGACGCAGCTTCG
ATTTCGCAAGGGGTGGGCGGAACCGCCCTTCAAAAAACAAGACGTGTTGT
GCCTGCTCGACGAGGCGGCCGGAATCGTGGCCAAAACCAGGGCCGAGCTC
GACAAGGAGgaggagggctttaAAATGCGCATGGTGGACGGCAGCGCCCG
GGAGTTCTTTCACTCGGTACCTTACGCCCCACAAGACTATCCTGACCGCT
TCGTCACggacctcgtccacgccaCCCTCCAAGATGGCCGGGGCTACGTG
GAGGGTCTGACCAAGAGTAGACGGCTACCTTCAGTCCTTCTCACAGGGAC
GCCTGCCCCCATCTGAATGGTGCGACGCGTTCCCGTCACAAGCCCGCCAT
TTTCAGCAGTGCCTTCTCAGCCGCCACCCAAGGGTAAGGCTCAAAGTCCA
AGACCTTCTGCGCCAAGGAATGTGGGAGAGAGCCTCACGCTTGCGGAGCG
TAAAGCGGCGAGGGCCATCGTAGCGGCGTATTCCGATTTCTGGACGCAGC
TTCGATTTCGCAAGGGGTGGGCGGAACCGCCCTTCAAAAAACAAGACGTG
TTGTGCCTGCTCGACGAGGCGGCCGGAATCGTGGCCAAAACCAGGGCCGA
GCTCGACAAGGAGgaggagggctttaAAATGCGCATGGTGGACGGCAGCG
CCCGGGAGTTCTTTCACTCGGTACCTTACGCCCCACAAGACTATCCTGAC
CGCTTCGTCACggacctcgtccacgccaCCCTCCAAGATGGCCGGGGCTA
CGTGGAGGGTCTGACCAAGAGTAGACGGCTACCTTCAGTCCTTCTCACAG
GGACGCCTGCCCCCATCTGA

Synonyms

Publications