EWM23499.1, cds7177 (CDS) Nannochloropsis gaditana

Overview
NameEWM23499.1
Unique Namecds7177
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:679555..679737 +
Alignment locationCM002470.1:679984..680097 +
Alignment locationCM002470.1:680323..680407 +
Alignment locationCM002470.1:680742..680812 +
Alignment locationCM002470.1:680993..681043 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23499.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100414g1.7734.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:679555..679737 +
CM002470.1supercontigCM002470.1:679984..680097 +
CM002470.1supercontigCM002470.1:680323..680407 +
CM002470.1supercontigCM002470.1:680742..680812 +
CM002470.1supercontigCM002470.1:680993..681043 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM23499.1 vs. NCBI_GenBank
Match: gi|585104570|gb|EWM23499.1| (hypothetical protein Naga_100414g1 [Nannochloropsis gaditana])

HSP 1 Score: 339.347 bits (869), Expect = 5.313e-118
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0
Query:    1 MVRRVPVTSPPFSAVPSQPPPKGKAQSPRPSAPRNVGESLTLAERKAARAIVAAYSDFWTQLRFRKGWAEPPFKKQDVLCLLDEAAGIVAKTRAELDKEEEGFKMRMVDGSAREFFHSVPYAPQDYPDRFVTDLVHATLQDGRGYVEGLTKSRRLPSVLLTGTPAPI 167
            MVRRVPVTSPPFSAVPSQPPPKGKAQSPRPSAPRNVGESLTLAERKAARAIVAAYSDFWTQLRFRKGWAEPPFKKQDVLCLLDEAAGIVAKTRAELDKEEEGFKMRMVDGSAREFFHSVPYAPQDYPDRFVTDLVHATLQDGRGYVEGLTKSRRLPSVLLTGTPAPI
Sbjct:    1 MVRRVPVTSPPFSAVPSQPPPKGKAQSPRPSAPRNVGESLTLAERKAARAIVAAYSDFWTQLRFRKGWAEPPFKKQDVLCLLDEAAGIVAKTRAELDKEEEGFKMRMVDGSAREFFHSVPYAPQDYPDRFVTDLVHATLQDGRGYVEGLTKSRRLPSVLLTGTPAPI 167          
BLAST of EWM23499.1 vs. NCBI_GenBank
Match: gi|553191542|ref|XP_005855395.1| (hypothetical protein NGA_0025720 [Nannochloropsis gaditana CCMP526] >gi|422293658|gb|EKU20958.1| hypothetical protein NGA_0025720 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 201.06 bits (510), Expect = 6.499e-64
Identity = 100/102 (98.04%), Postives = 100/102 (98.04%), Query Frame = 0
Query:    1 MVRRVPVTSPPFSAVPSQPPPKGKAQSPRPSAPRNVGESLTLAERKAARAIVAAYSDFWTQLRFRKGWAEPPFKKQDVLCLLDEAAGIVAKTRAELDKEEEG 102
            MVRRVPVTSPPFSAVPSQPPPKGKAQSPRPSAPRNVGESLTLAERKAARAIVAAYSDFWTQLRFRKGWAEPPFKKQDVLCLLDEAAGIVAKTRAELDKE  G
Sbjct:    1 MVRRVPVTSPPFSAVPSQPPPKGKAQSPRPSAPRNVGESLTLAERKAARAIVAAYSDFWTQLRFRKGWAEPPFKKQDVLCLLDEAAGIVAKTRAELDKERSG 102          
BLAST of EWM23499.1 vs. NCBI_GenBank
Match: gi|910756338|gb|KNH03962.1| (BAG domain containing protein [Perkinsela sp. CCAP 1560/4] >gi|910756678|gb|KNH04202.1| BAG domain containing protein [Perkinsela sp. CCAP 1560/4])

HSP 1 Score: 92.0485 bits (227), Expect = 1.258e-20
Identity = 45/117 (38.46%), Postives = 67/117 (57.26%), Query Frame = 0
Query:   35 NVGESLTLAERKAARAIVAAYSDFWTQLRFRKGWAEPPFKKQDVLCLLDEAAGIVAKTRAELDKEEEGFKMRMVDGSAREFFHSVPYAPQDYPDRFVTDLVHATLQDGRGYVEGLTK 151
            + G   T  + +    I+ AY  +W  +RFRKGWA+P F  +DV   +D AA  V + R  LDK   G KMRM+DG+A+++   +        + F+ D+VH++L+D  GYVE L K
Sbjct:    3 STGRHWTDDDERKKEKIIDAYRAYWEHIRFRKGWAKPAFLYEDVRIPMDIAAEYVVQIRKILDKRSPGMKMRMIDGNAQQYLQGIT-EKDTRVETFIRDIVHSSLKDATGYVERLDK 118          
BLAST of EWM23499.1 vs. NCBI_GenBank
Match: gi|955163868|emb|CUI15308.1| (Hypothetical protein, putative [Bodo saltans])

HSP 1 Score: 88.1965 bits (217), Expect = 6.479e-18
Identity = 44/106 (41.51%), Postives = 59/106 (55.66%), Query Frame = 0
Query:   51 IVAAYSDFWTQLRFRKGWAEPPFKKQDVLCLLDEAAGIVAKTRAELDKEEEGFKMRMVDGSAREFFHS---VPYAPQDYPDRFVTDLVHATLQDGRGYVEGLTKSR 153
            +  AY  F+  +RFR GWA PPF +  V  L  EAA +  + R  LD ++   K+R  DG A+ F H+   +    Q    +FV  LVHAT +D  GYVEGLTK +
Sbjct:  108 VFDAYMGFFEHIRFRNGWAIPPFSRDTVSPLFREAAAVTVRIRNFLDTQDSSTKLRKADGEAQTFLHTKEALEMVEQSSHRKFVIQLVHATFRDAVGYVEGLTKDK 213          
BLAST of EWM23499.1 vs. NCBI_GenBank
Match: gi|676383805|ref|XP_009035181.1| (hypothetical protein AURANDRAFT_62710 [Aureococcus anophagefferens] >gi|323454508|gb|EGB10378.1| hypothetical protein AURANDRAFT_62710 [Aureococcus anophagefferens])

HSP 1 Score: 81.6481 bits (200), Expect = 1.411e-15
Identity = 47/106 (44.34%), Postives = 60/106 (56.60%), Query Frame = 0
Query:   44 ERKAARAIVAAYSDFWTQLRFRKGWAEPPFKKQDVLCLLDEAAGIVAKTRAELDKEEEGFKMRMVDGSAREFFHSVPYAPQDYPDRFVTDLVHATLQDGRGYVEGL 149
            ER  A AI  AY+ F+  + FRKGW  PPF ++D   L    A  VA      D    GF +R  DG+AR++ H  P +P D P+ F+  L+HAT QD  GYVEGL
Sbjct:  150 ERAQAAAIYDAYAGFFDHISFRKGWKRPPFPRRDADPLF-RRAARVAAMARSRDLRRAGFALRQPDGAARDWMHDAP-SPADSPNAFLRGLLHATFQDANGYVEGL 253          
BLAST of EWM23499.1 vs. NCBI_GenBank
Match: gi|1129204583|gb|OLQ07046.1| (hypothetical protein AK812_SmicGene9661 [Symbiodinium microadriaticum])

HSP 1 Score: 68.9366 bits (167), Expect = 1.309e-10
Identity = 39/114 (34.21%), Postives = 57/114 (50.00%), Query Frame = 0
Query:   45 RKAARAIVAAYSDFWTQLRFRKGWAEPPFKKQDVLCLLDEAAGIVAKTRAELDKEEEGFKMRMVDGSAREFF---------HSVPYAPQDYPDRFVTDLVHATLQDGRGYVEGL 149
            R ++  I   YS F+  +  RKGW  PPFKK+DV      +A +VA  R  +D++  G  +R ++GS+ ++          H   + P+     F   LV ATL D  G VEGL
Sbjct:   77 RDSSHEIFNGYSFFFEHIGIRKGWRTPPFKKEDVQAPFMASAEVVAVVRHRIDEQGNGMVLRQLEGSSHDWLWGWSPEKPPHQAEFLPE-----FFRGLVFATLSDANGLVEGL 185          
BLAST of EWM23499.1 vs. NCBI_GenBank
Match: gi|470509791|ref|XP_004367756.1| (BAG domain containing protein [Acanthamoeba castellanii str. Neff] >gi|440801666|gb|ELR22675.1| BAG domain containing protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 68.1662 bits (165), Expect = 2.940e-10
Identity = 48/131 (36.64%), Postives = 65/131 (49.62%), Query Frame = 0
Query:   40 LTLAERKAARAIVAAYSDFWTQLRFRKGWAEPPFK-KQDVLCLLDEAAGIVAKTRAELDKEEEGFKM------------------RMVDGSAREFFHSVPYAPQDYPDRFVTDLVHATLQDGRGYV-EGLT 150
            LT   R+    + AAY +FW Q +FRKGWA+P F   + V  LL  AA  V + R+  D E  G                     R  +G ARE+  S+   P+  P +FV ++VHATL +  GY+ EGLT
Sbjct:   40 LTSDMRRQIYELKAAYEEFWQQRKFRKGWAKPLFAFDEAVEELLARAAEAVVRIRSHFD-ELNGSSTVPRGLSKSASSIATAKLPRFKEGRAREYLCSLEQDPRAAPQQFVREIVHATLSNEDGYLEEGLT 169          
The following BLAST results are available for this feature:
BLAST of EWM23499.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585104570|gb|EWM23499.1|5.313e-118100.00hypothetical protein Naga_100414g1 [Nannochloropsi... [more]
gi|553191542|ref|XP_005855395.1|6.499e-6498.04hypothetical protein NGA_0025720 [Nannochloropsis ... [more]
gi|910756338|gb|KNH03962.1|1.258e-2038.46BAG domain containing protein [Perkinsela sp. CCAP... [more]
gi|955163868|emb|CUI15308.1|6.479e-1841.51Hypothetical protein, putative [Bodo saltans][more]
gi|676383805|ref|XP_009035181.1|1.411e-1544.34hypothetical protein AURANDRAFT_62710 [Aureococcus... [more]
gi|1129204583|gb|OLQ07046.1|1.309e-1034.21hypothetical protein AK812_SmicGene9661 [Symbiodin... [more]
gi|470509791|ref|XP_004367756.1|2.940e-1036.64BAG domain containing protein [Acanthamoeba castel... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7194rna7194Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications