rna7186, rna7186 (mRNA) Nannochloropsis gaditana

Overview
Namerna7186
Unique Namerna7186
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length525
Alignment locationCM002470.1:658641..659684 +

Link to JBrowse

Properties
Property NameValue
ProductBeta-lactamase/transpeptidase-like protein
Orig transcript idgnl|cribi|Naga_101143g1.4275.mrna
Orig protein idgnl|cribi|Naga_101143g1.4275
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:658641..659684 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101143g1gene6949Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7186rna7186-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23504.1cds7169Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7186 ID=rna7186|Name=rna7186|organism=Nannochloropsis gaditana|type=mRNA|length=525bp
CATATCACGTTGCAACGTAAATAATGTGAATCTCGCATCCGATGGAAAGC
TCCTTTATATCATTGACACCGTTCTCTTTCCAAAGTTCCCCTTGTAGCCC
TGACATCTTTCCTGTTCGACTTCTTTCCTCTCCATTTTCTTTTCCAAGCC
CCGTCCCCACGTAGGCCTCATGGTCGATCCGAATCAAAAAGTTTCGTATG
GCTTTCAATTTCTATCGCAAGTTGAGGAAAGAGGGCCAGGCAGGGGAGGT
GTGGGAGATGGAGTTGCAGGAGGGGAGAGAGCCTCAGGGCCGCAGCAGCA
GGTCCTGGCTCCCTCAATACCTCGCAGGACAGCAGCTGATATCTTAGCGG
CAAGGGCTGACCCTCGCCGGAACCGCCCCGACACGGACAAGCTCTTCGAC
GTGGTGACCCTCCTCCAGCAGATCCCGGGGCATAGACCGGTGTCCGCGGA
CGAGATCCTGAAGGAGCTGGGGGTGGACCTCCGGCCCCCCGATGTTGTAG
ACCGAGCCGTGCACAATCTCCTTGA
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protein sequence of rna7186

>rna7186-protein ID=rna7186-protein|Name=rna7186|organism=Nannochloropsis gaditana|type=polypeptide|length=138bp
MIYFSRTSKGVLVPLVLALLVACTHAMEVATSPEEMGMSSARLNQITQEL
QKLVDDGDLPGAAFMVTRGGKYVYHGEVGYADLETMTGFRSNTICRLLSM
SKPVGAVAIMKLIEDKKLAFSDPLSKYLPEWAGAEGGR
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mRNA from alignment at CM002470.1:658641..659684+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7186 ID=rna7186|Name=rna7186|organism=Nannochloropsis gaditana|type=mRNA|length=1044bp|location=Sequence derived from alignment at CM002470.1:658641..659684+ (Nannochloropsis gaditana)
TGTAGGCCAATCGCCACATTAAGAGGCGTGGCGAAATCTCTTCCACAGGT
CATGATTTATTTCTCCAGGTACGCTTACTTGTAGAGAAACTATCCCAGGC
ATCGAAATCTCATATCATTTCAAATTTCACATGTCACTGCGTCTCCTACC
TACTTCATGGACACGTGACGCGTGCAGAACTTCAAAAGGGGTGTTGGTCC
CCCTCGTCCTAGCCCTACTCGTGGCATGCACTCATGCCATGGAAGTGGCC
ACTTCTCCTGAAGAAATGGGTGCGTTTTGCATTGTatcacctctccctcc
ttcctcctgtgcccATGCTGGATCCATCCGTTCGCTTCTCTTCTTGGGTT
CTTCTTGGTGGGGCGTACCAGTGAGGACGCTCTCTCGCAACCTTTGCGCC
CATCCCCGCGCATTCTACACATGGAATCGCTCGGGATCTCGGGCTTGCCT
GGTcacatgcctcctcttcccttcccctcgccctcccagGCATGTCCTCT
GCGCGGCTCAACCAGATCACGCAGGAGCTGCAAAAGCTCGTGGATGACGG
CGACCTTCCCGGCGCTGCTTTCATGGTcacgcggggagggaaatacGTGT
ACCACGGAGAGGTAGGGCGCAAGAatgaggcgaggaaggatacgaaggga
gggagaaagggaaaggggacggGCATCGTCTCGGCTCGTCGTGcgcttcg
cccctcccctccctccctccctccctccttccctcccttcctccttccct
ccctccctccttccctccctccctccctctcctccccttggcCCCAATCT
GCGCCTtacccgccccttcctccctccctccctctctccctccttccctc
cctcgtcaggTGGGGTACGCGGACCTGGAGACCATGACTGGCTTTAGGTC
GAATACAATTTGCCGGCTGCTCTCCATGAGCAAGccggtgggggcggtgg
ccATCATGAAGCTCATCGAGGACAAAAAGCTCGCCTTCAGCGACCCTCTT
TCGAAATACCTGCCGGAGTGGGCAggtgcggaaggagggaggga
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Coding sequence (CDS) from alignment at CM002470.1:658641..659684+

>rna7186 ID=rna7186|Name=rna7186|organism=Nannochloropsis gaditana|type=CDS|length=1664bp|location=Sequence derived from alignment at CM002470.1:658641..659684+ (Nannochloropsis gaditana)
ATGATTTATTTCTCCAGAACTTCAAAAGGGGTGTTGGTCCCCCTCGTCCT
AGCCCTACTCGTGGCATGCACTCATGCCATGGAAGTGGCCACTTCTCCTG
AAGAAATGGGCATGTCCTCTGCGCGGCTCAACCAGATCACGCAGGAGCTG
CAAAAGCTCGTGGATGACGGCGACCTTCCCGGCGCTGCTTTCATGGTcac
gcggggagggaaatacGTGTACCACGGAGAGgTGGGGTACGCGGACCTGG
AGACCATGACTGGCTTTAGGTCGAATACAATTTGCCGGCTGCTCTCCATG
AGCAAGccggtgggggcggtggccATCATGAAGCTCATCGAGGACAAAAA
GCTCGCCTTCAGCGACCCTCTTTCGAAATACCTGCCGGAGTGGGCAggtg
cggaaggagggagggaATGATTTATTTCTCCAGAACTTCAAAAGGGGTGT
TGGTCCCCCTCGTCCTAGCCCTACTCGTGGCATGCACTCATGCCATGGAA
GTGGCCACTTCTCCTGAAGAAATGGGCATGTCCTCTGCGCGGCTCAACCA
GATCACGCAGGAGCTGCAAAAGCTCGTGGATGACGGCGACCTTCCCGGCG
CTGCTTTCATGGTcacgcggggagggaaatacGTGTACCACGGAGAGgTG
GGGTACGCGGACCTGGAGACCATGACTGGCTTTAGGTCGAATACAATTTG
CCGGCTGCTCTCCATGAGCAAGccggtgggggcggtggccATCATGAAGC
TCATCGAGGACAAAAAGCTCGCCTTCAGCGACCCTCTTTCGAAATACCTG
CCGGAGTGGGCAggtgcggaaggagggagggaATGATTTATTTCTCCAGA
ACTTCAAAAGGGGTGTTGGTCCCCCTCGTCCTAGCCCTACTCGTGGCATG
CACTCATGCCATGGAAGTGGCCACTTCTCCTGAAGAAATGGGCATGTCCT
CTGCGCGGCTCAACCAGATCACGCAGGAGCTGCAAAAGCTCGTGGATGAC
GGCGACCTTCCCGGCGCTGCTTTCATGGTcacgcggggagggaaatacGT
GTACCACGGAGAGgTGGGGTACGCGGACCTGGAGACCATGACTGGCTTTA
GGTCGAATACAATTTGCCGGCTGCTCTCCATGAGCAAGccggtgggggcg
gtggccATCATGAAGCTCATCGAGGACAAAAAGCTCGCCTTCAGCGACCC
TCTTTCGAAATACCTGCCGGAGTGGGCAggtgcggaaggagggagggaAT
GATTTATTTCTCCAGAACTTCAAAAGGGGTGTTGGTCCCCCTCGTCCTAG
CCCTACTCGTGGCATGCACTCATGCCATGGAAGTGGCCACTTCTCCTGAA
GAAATGGGCATGTCCTCTGCGCGGCTCAACCAGATCACGCAGGAGCTGCA
AAAGCTCGTGGATGACGGCGACCTTCCCGGCGCTGCTTTCATGGTcacgc
ggggagggaaatacGTGTACCACGGAGAGgTGGGGTACGCGGACCTGGAG
ACCATGACTGGCTTTAGGTCGAATACAATTTGCCGGCTGCTCTCCATGAG
CAAGccggtgggggcggtggccATCATGAAGCTCATCGAGGACAAAAAGC
TCGCCTTCAGCGACCCTCTTTCGAAATACCTGCCGGAGTGGGCAggtgcg
gaaggagggaggga
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Synonyms
Publications