EWM23504.1, cds7169 (CDS) Nannochloropsis gaditana

Overview
NameEWM23504.1
Unique Namecds7169
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:658692..658708 +
Alignment locationCM002470.1:658818..658909 +
Alignment locationCM002470.1:659130..659251 +
Alignment locationCM002470.1:659500..659684 +

Link to JBrowse

Properties
Property NameValue
End range.
End range659684
Protein idEWM23504.1
ProductBeta-lactamase/transpeptidase-like protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101143g1.4275.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:658692..658708 +
CM002470.1supercontigCM002470.1:658818..658909 +
CM002470.1supercontigCM002470.1:659130..659251 +
CM002470.1supercontigCM002470.1:659500..659684 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR001466Beta-lactam-related
IPR012338Beta-lactam/transpept-like
Homology
BLAST of EWM23504.1 vs. NCBI_GenBank
Match: gi|585104582|gb|EWM23504.1| (Beta-lactamase/transpeptidase-like protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 285.419 bits (729), Expect = 1.650e-97
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0
Query:    1 MIYFSRTSKGVLVPLVLALLVACTHAMEVATSPEEMGMSSARLNQITQELQKLVDDGDLPGAAFMVTRGGKYVYHGEVGYADLETMTGFRSNTICRLLSMSKPVGAVAIMKLIEDKKLAFSDPLSKYLPEWAGAEGGR 138
            MIYFSRTSKGVLVPLVLALLVACTHAMEVATSPEEMGMSSARLNQITQELQKLVDDGDLPGAAFMVTRGGKYVYHGEVGYADLETMTGFRSNTICRLLSMSKPVGAVAIMKLIEDKKLAFSDPLSKYLPEWAGAEGGR
Sbjct:    1 MIYFSRTSKGVLVPLVLALLVACTHAMEVATSPEEMGMSSARLNQITQELQKLVDDGDLPGAAFMVTRGGKYVYHGEVGYADLETMTGFRSNTICRLLSMSKPVGAVAIMKLIEDKKLAFSDPLSKYLPEWAGAEGGR 138          
BLAST of EWM23504.1 vs. NCBI_GenBank
Match: gi|1101485331|gb|APB99426.1| (serine hydrolase [Polynucleobacter asymbioticus] >gi|1101487638|gb|APC01733.1| serine hydrolase [Polynucleobacter asymbioticus])

HSP 1 Score: 102.064 bits (253), Expect = 6.995e-23
Identity = 51/133 (38.35%), Postives = 79/133 (59.40%), Query Frame = 0
Query:    6 RTSKGVLVPLVLALLVACTHAMEV---ATSPEEMGMSSARLNQITQELQKLVDDGDLPGAAFMVTRGGKYVYHGEVGYADLETMTGFRSNTICRLLSMSKPVGAVAIMKLIEDKKLAFSDPLSKYLPEWAGAE 135
            +  K ++  ++LA     + A+     +  PE++GMSSARL  +   LQ  VD G++PGA  M+ R GK VY   VGY D  T      + I R+ SM+KP+ +VA M L+E+ K+  +DP+SK++PE+A  +
Sbjct:    2 KYQKNIINQILLASFFVSSLALAQNIPSAKPEDVGMSSARLKNVKASLQAEVDKGNIPGAVVMINRKGKLVYSEVVGYQDKATNKPMSKDAIFRIYSMTKPLASVAAMMLVEEGKMQLADPISKFMPEFANMQ 134          
BLAST of EWM23504.1 vs. NCBI_GenBank
Match: gi|1173672787|ref|WP_081354865.1| (serine hydrolase [Polynucleobacter asymbioticus])

HSP 1 Score: 102.064 bits (253), Expect = 7.273e-23
Identity = 51/133 (38.35%), Postives = 79/133 (59.40%), Query Frame = 0
Query:    6 RTSKGVLVPLVLALLVACTHAMEV---ATSPEEMGMSSARLNQITQELQKLVDDGDLPGAAFMVTRGGKYVYHGEVGYADLETMTGFRSNTICRLLSMSKPVGAVAIMKLIEDKKLAFSDPLSKYLPEWAGAE 135
            +  K ++  ++LA     + A+     +  PE++GMSSARL  +   LQ  VD G++PGA  M+ R GK VY   VGY D  T      + I R+ SM+KP+ +VA M L+E+ K+  +DP+SK++PE+A  +
Sbjct:   10 KYQKNIINQILLASFFVSSLALAQNIPSAKPEDVGMSSARLKNVKASLQAEVDKGNIPGAVVMINRKGKLVYSEVVGYQDKATNKPMSKDAIFRIYSMTKPLASVAAMMLVEEGKMQLADPISKFMPEFANMQ 142          
BLAST of EWM23504.1 vs. NCBI_GenBank
Match: gi|497351304|ref|WP_009665517.1| (hypothetical protein [Oxalobacteraceae bacterium IMCC9480] >gi|327548039|gb|EGF32774.1| beta-lactamase [Oxalobacteraceae bacterium IMCC9480])

HSP 1 Score: 99.3673 bits (246), Expect = 7.931e-22
Identity = 49/121 (40.50%), Postives = 70/121 (57.85%), Query Frame = 0
Query:   17 LALLVACTHAMEVATS-----PEEMGMSSARLNQITQELQKLVDDGDLPGAAFMVTRGGKYVYHGEVGYADLETMTGFRSNTICRLLSMSKPVGAVAIMKLIEDKKLAFSDPLSKYLPEWA 132
            + LL+A    M +        PEE+G+SSARL  +   LQ  VD+G +PGA  M+ R GK  Y   +G+ D         + I R+ SM+KP+ +V  M L+ED K+  +DP+SKYLPE+A
Sbjct:   10 VGLLLAAATGMAIGQGLPTARPEEVGLSSARLAAMKTSLQAEVDNGKIPGAIVMIVRNGKLAYSETIGFQDKPAGKALHQDAIFRIYSMTKPLASVGAMMLVEDGKIQLTDPISKYLPEFA 130          
BLAST of EWM23504.1 vs. NCBI_GenBank
Match: gi|1180043465|ref|WP_083564309.1| (serine hydrolase [Polynucleobacter sp. MWH-Adler-W8])

HSP 1 Score: 98.9821 bits (245), Expect = 1.070e-21
Identity = 51/133 (38.35%), Postives = 80/133 (60.15%), Query Frame = 0
Query:    6 RTSKGVLVPLVLA--LLVACTHAMEVATS-PEEMGMSSARLNQITQELQKLVDDGDLPGAAFMVTRGGKYVYHGEVGYADLETMTGFRSNTICRLLSMSKPVGAVAIMKLIEDKKLAFSDPLSKYLPEWAGAE 135
            R  K ++  L++A   + +   A  + T+ PE++GMSSARL  +   LQ  VD G++PGA  M+ R GK VY   VGY D         ++I R+ SM+KP+ +VA M L+ + K+  +DP+SK++PE+A  +
Sbjct:    2 RYQKNLINKLLVASFFISSLAIAQNIPTAKPEDVGMSSARLKNVKASLQAEVDKGNIPGAVVMINRKGKLVYSEVVGYQDKSANKAMSKDSIFRIYSMTKPLASVAAMILVGEGKMQLADPISKFMPEFANMQ 134          
BLAST of EWM23504.1 vs. NCBI_GenBank
Match: gi|1099912326|emb|SFK20823.1| (CubicO group peptidase, beta-lactamase class C family [Amycolatopsis sacchari])

HSP 1 Score: 98.2117 bits (243), Expect = 1.692e-21
Identity = 43/106 (40.57%), Postives = 68/106 (64.15%), Query Frame = 0
Query:   27 MEVATSPEEMGMSSARLNQITQELQKLVDDGDLPGAAFMVTRGGKYVYHGEVGYADLETMTGFRSNTICRLLSMSKPVGAVAIMKLIEDKKLAFSDPLSKYLPEWA 132
            +E+A  P E+G  ++RL +I +   + VDDG LPG   +VTR G  V+H   G++D+E      ++T+ R+ SM+KPV +VA M L E+     +DP+S++LPE+A
Sbjct:    3 LELAAEPAELGFDASRLERIDRHFARFVDDGRLPGWQIVVTRRGNVVHHSRYGHSDVEAGKPVEADTLWRIFSMTKPVTSVAAMMLYEEGAFELTDPISRWLPEFA 108          
BLAST of EWM23504.1 vs. NCBI_GenBank
Match: gi|365272994|emb|CCD86583.1| (putative beta-lactamase [Bradyrhizobium sp. ORS 285] >gi|1200886731|emb|SMX59718.1| putative beta-lactamase [Bradyrhizobium sp. ORS 285])

HSP 1 Score: 98.2117 bits (243), Expect = 2.349e-21
Identity = 48/101 (47.52%), Postives = 65/101 (64.36%), Query Frame = 0
Query:   32 SPEEMGMSSARLNQITQELQ-KLVDDGDLPGAAFMVTRGGKYVYHGEVGYADLETMTGFRSNTICRLLSMSKPVGAVAIMKLIEDKKLAFSDPLSKYLPEW 131
            SPE +GMS A L +I   LQ + VD G  PGA  MV R GK V+   +GYAD+E        TI R+ SM+KP+ +VA M L+E+ K+A  +P++KY+PEW
Sbjct:   29 SPETVGMSKAALARIDAHLQQRYVDAGRFPGAQLMVYRRGKIVHQSSLGYADVERKVPVTDQTIYRIYSMTKPITSVAFMMLVEEGKVALDEPVAKYIPEW 129          
BLAST of EWM23504.1 vs. NCBI_GenBank
Match: gi|737677258|ref|WP_035646397.1| (serine hydrolase [Bradyrhizobium sp. ORS 285])

HSP 1 Score: 97.8265 bits (242), Expect = 2.521e-21
Identity = 48/101 (47.52%), Postives = 65/101 (64.36%), Query Frame = 0
Query:   32 SPEEMGMSSARLNQITQELQ-KLVDDGDLPGAAFMVTRGGKYVYHGEVGYADLETMTGFRSNTICRLLSMSKPVGAVAIMKLIEDKKLAFSDPLSKYLPEW 131
            SPE +GMS A L +I   LQ + VD G  PGA  MV R GK V+   +GYAD+E        TI R+ SM+KP+ +VA M L+E+ K+A  +P++KY+PEW
Sbjct:    8 SPETVGMSKAALARIDAHLQQRYVDAGRFPGAQLMVYRRGKIVHQSSLGYADVERKVPVTDQTIYRIYSMTKPITSVAFMMLVEEGKVALDEPVAKYIPEW 108          
BLAST of EWM23504.1 vs. NCBI_GenBank
Match: gi|1111350420|gb|OJI04000.1| (serine hydrolase [Polynucleobacter sp. MWH-Adler-W8])

HSP 1 Score: 97.4413 bits (241), Expect = 3.120e-21
Identity = 45/103 (43.69%), Postives = 66/103 (64.08%), Query Frame = 0
Query:   33 PEEMGMSSARLNQITQELQKLVDDGDLPGAAFMVTRGGKYVYHGEVGYADLETMTGFRSNTICRLLSMSKPVGAVAIMKLIEDKKLAFSDPLSKYLPEWAGAE 135
            PE++GMSSARL  +   LQ  VD G++PGA  M+ R GK VY   VGY D         ++I R+ SM+KP+ +VA M L+ + K+  +DP+SK++PE+A  +
Sbjct:   15 PEDVGMSSARLKNVKASLQAEVDKGNIPGAVVMINRKGKLVYSEVVGYQDKSANKAMSKDSIFRIYSMTKPLASVAAMILVGEGKMQLADPISKFMPEFANMQ 117          
BLAST of EWM23504.1 vs. NCBI_GenBank
Match: gi|499900894|ref|WP_011581628.1| (serine hydrolase [Chelativorans sp. BNC1] >gi|110285627|gb|ABG63686.1| beta-lactamase [Chelativorans sp. BNC1])

HSP 1 Score: 97.8265 bits (242), Expect = 3.204e-21
Identity = 52/114 (45.61%), Postives = 72/114 (63.16%), Query Frame = 0
Query:   24 THAMEVATSPEEMGMSSARLNQITQELQKLVDDGDLPGAAFMVTRGGKYVYHGEVGYADLETMTGFRSNTICRLLSMSKPVGAVAIMKLIEDKKLAFSDPLSKYLPEWAGAEGG 137
            TH +  A +PE++G S  RL++I   L+  ++ G LPGA  +V R GK VY+   G +D E  T  R ++I RL SMSKP+  VA M L+ED K+   DP+SKYLPE+  A+ G
Sbjct:   32 THKL-TAAAPEDVGFSPDRLSKIGAVLRSDIERGKLPGAVVLVARHGKIVYNEVFGVSDPEHGTAMRIDSIFRLYSMSKPITQVAAMMLVEDGKIGLEDPISKYLPEFENAKVG 144          
The following BLAST results are available for this feature:
BLAST of EWM23504.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104582|gb|EWM23504.1|1.650e-97100.00Beta-lactamase/transpeptidase-like protein, partia... [more]
gi|1101485331|gb|APB99426.1|6.995e-2338.35serine hydrolase [Polynucleobacter asymbioticus] >... [more]
gi|1173672787|ref|WP_081354865.1|7.273e-2338.35serine hydrolase [Polynucleobacter asymbioticus][more]
gi|497351304|ref|WP_009665517.1|7.931e-2240.50hypothetical protein [Oxalobacteraceae bacterium I... [more]
gi|1180043465|ref|WP_083564309.1|1.070e-2138.35serine hydrolase [Polynucleobacter sp. MWH-Adler-W... [more]
gi|1099912326|emb|SFK20823.1|1.692e-2140.57CubicO group peptidase, beta-lactamase class C fam... [more]
gi|365272994|emb|CCD86583.1|2.349e-2147.52putative beta-lactamase [Bradyrhizobium sp. ORS 28... [more]
gi|737677258|ref|WP_035646397.1|2.521e-2147.52serine hydrolase [Bradyrhizobium sp. ORS 285][more]
gi|1111350420|gb|OJI04000.1|3.120e-2143.69serine hydrolase [Polynucleobacter sp. MWH-Adler-W... [more]
gi|499900894|ref|WP_011581628.1|3.204e-2145.61serine hydrolase [Chelativorans sp. BNC1] >gi|1102... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7186rna7186Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications