rna7179, rna7179 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7179
Unique Name	rna7179
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1734
Alignment location	CM002470.1:645690..646505 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100352g4.220.mrna
Orig protein id	gnl\|cribi\|Naga_100352g4.220
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:645690..646505 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100352g4	gene6942	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23512.1	cds7162	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7179	rna7179-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:645690..646505-
coding sequence from alignment at CM002470.1:645690..646505-

mRNA sequence

>rna7179 ID=rna7179|Name=rna7179|organism=Nannochloropsis gaditana|type=mRNA|length=1734bp
ATGCCATACGGCAGGGGAGTGGTCAAAGCGCGAGAGGGAGACCTTCTAAG
TGCTGTTGAGAAAGCACGAAGAGGGGTGGTGGTACAGGCCATGCAGGAGC
GACCTTCAAGCCATGCTTCGTCTCTAACCCCTTCCTCATCCACCGCCTCC
TCTACAACTTCCTCCTTCCCCTCCATTTCCGATCCCCCGACATCCTCCTC
CTCTCCTTCTTCCTCCTCAGCACCTTTTCATATGATTTGGCGCTCCTTTC
CTCCTTCTAATGCCTCCGGCTCTTCCACTTCATGCTCTTCTCACCATTTG
CTAAGTCCAAGCCGTCTACTGCAGGGCACACGGAACTTCCAAATTTCAGC
CATATTTTTGGTACTCATCCTTCTGAACGCCTTTCCGACCCCCTCAGCCT
GGCGTGCCCCCCCTCTTCCCCGCCTCGCCGCTCCTTTTCGCCTAATGTAC
ACCAGGGTCCAAAGACCCTTCATCCCGCCTATTTCAAACGCGCTGCCCGA
CGACGATTTTCAGCCGGAGCGGGAGAAGCGACCAGCCTACCCCCGACCCT
GGCCGCCTTTCACGGCAGAGGAGGAGGAAGGGGTGGAGGAGAAGGAGGCA
GCGGGGGAGGGCGGGCATTACTACATCATAGAGGAGGAAGAAAGGGTGAT
GATGAGGCGGGAAGTGACAGTAGTGGCAGGGACGGAACCGCACCCACGCC
GCGCGCGCTTTGAGCTGCACAAACGCTGGCAGTCGGTGACGAGTGTGGAT
GTGATAGAAGACGGACAGATCCTAGGAGGGGCAAAAAAGGGCTTGCCAGA
ACAGACCCTCCTCCGTTGGCAAGAGAGCCCTCGAAACGTCCTCCTCCTCA
TGAAACGCGGCTCCCACGACATCCTTCAGAGGGTGGCGGACATCACCAAT
TTCCTCCAGGCCCGCGAGGGGGTGCGGGTGCTGGTAGAGCGTCAAGTCAA
ATACGACCTCCTGGACTCGTTCGACATCCACGTGGCGGAGCTGTACGGGG
CCCGAGACCGCTCCCACCACGCCGTTGACCTGGTCATCACCCTCGGCGGC
GATGGCCTCCTTATGCACGCGAATTGGCTCTTTCAGAAGTCTGCCCCTAT
CATTCTTCCCGTCAACCTGGGCTCGCTTGGCTTCCTCCTCCCTTTCGAGT
ACGACGACATCTACCCGACCATCGAGCGGGTGCTCACCCAGGACGTGGAC
CTGACCCTGCGGATGCGCCTTCGGTGTCGAATCATTCGAAACGAGACGGT
GGTCATGGACTTGGTGGTCATGAACGATGCTGTCGTCGAACGCGGATCCT
CCCCCTATCTCGCCTCGCTGGATTGCTTCTGCAACGGCCAGTACGTCACC
ACCGTGCAAGCCGACGGCCTCATCATCGCCACTCCCACAGGATCCACCGC
CTACAGCATGTCCGCAGGCGGCTCGATGATGCATCCGGGTATTCAAGCCC
TGCTTCTCACACCTATATGTCCCCATTCGCTCTCCTTCCGCCCCCTTGTC
TTCCCCGACTCCGCCGTCATCTCCCTCTGCATGCCGCTGGACGTGCGCTC
CCACGCATGGGTATCCTTCGACGGTCGATTTCGGCATCGACTCATGGATG
GAGATATCCTGGAGGTGTCGAACTCAGAGTACCCCCTACCCACCGTGACG
CACCGCAACGTGACAGCCGACTGGTTTAGGGCCTTAAACAAAGCCTTCAA
TTTTAACATGCGAACCCGACAAAAACCTTTGTAA

protein sequence of rna7179

>rna7179-protein ID=rna7179-protein|Name=rna7179|organism=Nannochloropsis gaditana|type=polypeptide|length=102bp
PPSFPPTVFGPRSSGTGRTASSRHGLGLGGGGERERGRAGGTEGGILVLP
DGRVPLPVPRRPSAFDRAHSRRNSLLPREQLIAKERGTVIVFHTSLSSLF
SS

mRNA from alignment at CM002470.1:645690..646505-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7179 ID=rna7179|Name=rna7179|organism=Nannochloropsis gaditana|type=mRNA|length=816bp|location=Sequence derived from alignment at CM002470.1:645690..646505- (Nannochloropsis gaditana)
TCCCTCCCTCCTTCCCTCCCACCGTCTTCGGTCCCCGCTCCTCCGGCACA
GGACGCACAGCTTCTTCGCGCCATGGCCTTGGACTTGGCGGAGGAGGGGA
GCGGGAGAGAGGGAGGGCGGGAGGGACCGAGGGAGGTATCTTGGTCCTCC
CTGATGGACGCGTACCCTTACCTGTCCCGCGAAGACCCTCGGCGTTTGAT
CGGGCTCATTCGAGAAGGAATTCACTACTCCCCCGCGAGCAGCTGATCGC
TAAGGAGAGAGGGACGGTCATCGTCTTCCATACCTCCCTGTCCTCCCTCT
TTTCCTCCTAGTGGTCTTGTGGAAGAACATGAAAATACCCGATGGAAAGC
TCCAATACTTCCCTGTGAGCAGCTCAGGGATACAAGTAGGAAGAGGGCTC
ATTTCCTCCTTCTTTCTCCGTGGCGGATATCGTAATTGTCCTGGTTTGAC
AAGGGAACTTTGTACTATATGTGCACAATCTGAGAAGAGGGATTGCTAAG
AAGGGGAGGGCAAGATGCCAAGGGATAGAGGGGGAGGGACTGTACTTGTA
GGGTTGTGGGGGCGCAAATGGAGACGAGAGAAGTACTGTCGGATGATTTT
TCGGAGCTGGACGTGGCATTGACGGTGTGATAGATGGGGACCGACCTGAG
GATGCCAGGGGCCTTCTCATTTTTGAGACGTGTGCGGCGTGCAACGGGAA
AGAGGAGACAGAGGAGGAGGGAAGAGATGAGGTTAATTCGGAGAAAGCTG
TTTAAAGAGGGAGGCGAGAGCCTCTTTCGAACAGAGAAAAAAGGTAAATT
CCCTAGGCCTCGTGTA

Coding sequence (CDS) from alignment at CM002470.1:645690..646505-

>rna7179 ID=rna7179|Name=rna7179|organism=Nannochloropsis gaditana|type=CDS|length=309bp|location=Sequence derived from alignment at CM002470.1:645690..646505- (Nannochloropsis gaditana)
CCTCCCTCCTTCCCTCCCACCGTCTTCGGTCCCCGCTCCTCCGGCACAGG
ACGCACAGCTTCTTCGCGCCATGGCCTTGGACTTGGCGGAGGAGGGGAGC
GGGAGAGAGGGAGGGCGGGAGGGACCGAGGGAGGTATCTTGGTCCTCCCT
GATGGACGCGTACCCTTACCTGTCCCGCGAAGACCCTCGGCGTTTGATCG
GGCTCATTCGAGAAGGAATTCACTACTCCCCCGCGAGCAGCTGATCGCTA
AGGAGAGAGGGACGGTCATCGTCTTCCATACCTCCCTGTCCTCCCTCTTT
TCCTCCTAG

Synonyms

Publications