rna7175, rna7175 (mRNA) Nannochloropsis gaditana

Overview
Namerna7175
Unique Namerna7175
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1644
Alignment locationCM002470.1:629640..630704 +

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Properties
Property NameValue
Productacyl-CoA-binding protein
Orig transcript idgnl|cribi|Naga_101458g1.9010.mrna
Orig protein idgnl|cribi|Naga_101458g1.9010
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:629640..630704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101458g1gene6938Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7175rna7175-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23515.1cds7158Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7175 ID=rna7175|Name=rna7175|organism=Nannochloropsis gaditana|type=mRNA|length=1644bp
CATCCCTCCTCCCATGCGGCCACAGGTGATCTCCCTTTTGTCCTCCCTCC
CCCTCTCCTCCTTGTCGACGAAAAACGAGGTCGACCGGGCGCTGCAAGAA
AAGGGCCTATTGGACGGGGGCATGCGAGCCTTCGCCCTCACGAACGTGGT
GCAGGGGGAGGCAGGCGTCCGGTGGGAGATCAACCTGGCGGGGATCGAGA
GTGCCCTCCCCGAAATCGCGGCCTTTGACGTGGGCGGGGACGACTCCACC
AGCTGCAGCACTGCCTACCCGCACAAGACCCTGTTCTTGAACGGGGGGAA
GAGCAAATACCTCCGGACCGCGCACCTGTCCACCATTGCGCAGCTGTTTC
CGACTTTTTCCTTGGCCACCATCAGAGATGCCGGCCACTGGGTGCACGCG
GAGAAGCCTGAGGAAACGTTAAACATAATTCAACGTTATCTCGACGAGGA
ATTGGAGGAGTGAGGCGATACCGTGGTCGGAGGAGTCGTAAGCCTTTGTA
TTCATAAGCAAAAGAAACTTGAGATATGCGATAGATGAGCATGGGGATGG
GTCGAGAAGAGGGGAAAATGTGTCATTATGATTAGGGTGGAGATTTGGGA
GGTTAAACCATCGATATGTACAGTCCACAAGCGGTCTCAAGTAGCAAAAG
GCTGACTGTAATATTTTTTTTTAAGGCCCTATTTGTTTACTAACCGAAGT
ACCGTCTATACGAAGAAGGATATTTAATTTTTGGCAGTACTGCTCCTTGA
GGTTGCAATCTCATGCTTCCAAACAGCAAGGTAGCCGTGACTTAAGAAAA
ACCGTTACAAATTTGAATGACCGTTAAGCCAATACCGTTTCGAATGCCCA
CGAGCGAGGAACCAATTTAGCTAATTGTTGCCCTGTTTCTCGCCCTAGCT
TCTAGGTCGGGGAGAAATCTCGTATTGAATCTCTTATGCAATTTTTCTTG
CGCTGCTCAGAATTTGAAAGTCCTTAATTACATGGCACGTGCGCTTTCCT
TGTCTTTGACCCTCCCATGTGCCCATCGTGTTTTGCTTGTCAAGCATCCC
TTTCCGTTCGCAACTCAGGCAGGAAGTGTATAGAGAGCAGTGCACTGCAC
TTACCTTACCTGTATCTAGTTTTTGCTCGCTGTGTCTGACTTTGGACTGC
AGTCTTGAAATCCGTTGGCGTAGGCATCTACTGAAAAGAAAATTACACCT
CAACTGAGTTGGACGGGCAATAGTCAGATCTCTTTTGCAATATTATCATC
GTTGACATCATTTATCTCAGTTACTGTGTATAATTCAATCATCCAGGCCA
AATTCTAGAAAACGGGGACGCTAACTACACGCGTGCCCACAAGGCTCCGC
AAGTAGAATGTCGGAGAAGCCATATGGAGGCACGGTTCCGGGAGATGTGG
TAATGATCAGTGGATACTTGCATAAGAAGACACGGGACGGTCGGTGGCAG
AAGCGGTGGTTCGAGACAAATGGGTGCTTCTTGACCTACTATAAGGTAAG
ATATAAGACGAGAAAGAAAAGTAAGGACGGCGATGGCGTGAACAAGGGAA
GATGAGGGAGGAGAGGGAAAAGATGAGAAGGGCTGCGGATGGCTCTTGAT
ATGACGCGTGAGAGGGAGAGGGAGTGAGGTCCCAGGAGCACGGT
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protein sequence of rna7175

>rna7175-protein ID=rna7175-protein|Name=rna7175|organism=Nannochloropsis gaditana|type=polypeptide|length=136bp
MLVTSKLRNAFTLAAKWVKEHHKEANAPNSVLFRLYGLYKRSTAGACNVR
VPTMLVEPIARERYNSWKLASGLTEEQAMRAYLDLVRVTFPAFVEAAAPE
LKDLDDLQSVKEENRALLAETTEVLALYSKLQQVRG
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mRNA from alignment at CM002470.1:629640..630704+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7175 ID=rna7175|Name=rna7175|organism=Nannochloropsis gaditana|type=mRNA|length=1065bp|location=Sequence derived from alignment at CM002470.1:629640..630704+ (Nannochloropsis gaditana)
AGAAAGTGCCCCCAACGGAAGTTGACAAAACCACCATATACACCAGTCTG
GCGGTATTTTCAATCCGCACGCTCACGTCAATATTGCACAGGGTAGGACC
ACGGGCACCGACGACCGTGCATAAGGCACATAACCCGAGTCCCCTTCCCA
TCGTAGCTATCGCTCCCACGCCTCCGGGTGCCAGGACACCCTGTCTGCGT
GAATTATTTACACACCACGACCATACCGTACTGGTAGCCAATAAGCATGC
TGGTGACCAGCAAGCTTCGAAACGCTTTCACTGTACGTATTCGCCCGTCA
TTTATTATCATTCTATCTGCCTATCTCATATTCTCTTGAAACGTATCGCT
TGGTCGATCTTGCCTCAGCTCGCAGCCAAGTGGGTTAAGGAACATCACAA
AGAAGCAAATGCGCCCAATAGCGTCCTCTTTCGGGTATGTGATACGCTCA
AATACGTGGAGAGATGGTGAAAGCCGGGTTTATAaagtgagagggaaaga
atgcaGGACTGGAAAGTAGAAAGAAGGGGCGCCACGGTTGGCACGTAAAA
AAAATGAGGCCTACTTCATGCATGTATGAAGCTCAATGGTTCCTTCTCGG
TACACCCACCTTGTCACAGCTCTACGGGCTGTACAAGCGGTCGACAGCCG
GGGCGTGCAACGTGCGTGTGCCCACCATGCTGGTGGAGCCCATCGCGAGa
gagaggtagagggggaggggaaaagggaaaggaagggaggcaaggtgGAC
GCGGCGAGAGGCCTGCCTCGCGCCTTCAaaccctcttttctcctcatGCA
TATgccctccatcttcccctgccccgcctcctccctgcctgtaCAGGTAC
AATTCCTGGAAATTAGCCAGCGGCTTGACGGAAGAGCAGGCGATGCGGGC
GTACCTGGACCTCGTGCGAGTCActttccccgcctttgtAGAGGCGGCGG
CCCCCGAGCTCAAGGATTTGGACGATCTACAAAgcgtgaaggaagagaac
cGGGCCCTCCTTGCGGAAACCACTGAGGTCTTGGCCCTGTATAGCAAGCT
TCAGCAGGTACGAGG
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Coding sequence (CDS) from alignment at CM002470.1:629640..630704+

>rna7175 ID=rna7175|Name=rna7175|organism=Nannochloropsis gaditana|type=CDS|length=1628bp|location=Sequence derived from alignment at CM002470.1:629640..630704+ (Nannochloropsis gaditana)
ATGCTGGTGACCAGCAAGCTTCGAAACGCTTTCACTCTCGCAGCCAAGTG
GGTTAAGGAACATCACAAAGAAGCAAATGCGCCCAATAGCGTCCTCTTTC
GGCTCTACGGGCTGTACAAGCGGTCGACAGCCGGGGCGTGCAACGTGCGT
GTGCCCACCATGCTGGTGGAGCCCATCGCGAGagagagGTACAATTCCTG
GAAATTAGCCAGCGGCTTGACGGAAGAGCAGGCGATGCGGGCGTACCTGG
ACCTCGTGCGAGTCActttccccgcctttgtAGAGGCGGCGGCCCCCGAG
CTCAAGGATTTGGACGATCTACAAAgcgtgaaggaagagaaccGGGCCCT
CCTTGCGGAAACCACTGAGGTCTTGGCCCTGTATAGCAAGCTTCAGCAGG
TACGAGGATGCTGGTGACCAGCAAGCTTCGAAACGCTTTCACTCTCGCAG
CCAAGTGGGTTAAGGAACATCACAAAGAAGCAAATGCGCCCAATAGCGTC
CTCTTTCGGCTCTACGGGCTGTACAAGCGGTCGACAGCCGGGGCGTGCAA
CGTGCGTGTGCCCACCATGCTGGTGGAGCCCATCGCGAGagagagGTACA
ATTCCTGGAAATTAGCCAGCGGCTTGACGGAAGAGCAGGCGATGCGGGCG
TACCTGGACCTCGTGCGAGTCActttccccgcctttgtAGAGGCGGCGGC
CCCCGAGCTCAAGGATTTGGACGATCTACAAAgcgtgaaggaagagaacc
GGGCCCTCCTTGCGGAAACCACTGAGGTCTTGGCCCTGTATAGCAAGCTT
CAGCAGGTACGAGGATGCTGGTGACCAGCAAGCTTCGAAACGCTTTCACT
CTCGCAGCCAAGTGGGTTAAGGAACATCACAAAGAAGCAAATGCGCCCAA
TAGCGTCCTCTTTCGGCTCTACGGGCTGTACAAGCGGTCGACAGCCGGGG
CGTGCAACGTGCGTGTGCCCACCATGCTGGTGGAGCCCATCGCGAGagag
agGTACAATTCCTGGAAATTAGCCAGCGGCTTGACGGAAGAGCAGGCGAT
GCGGGCGTACCTGGACCTCGTGCGAGTCActttccccgcctttgtAGAGG
CGGCGGCCCCCGAGCTCAAGGATTTGGACGATCTACAAAgcgtgaaggaa
gagaaccGGGCCCTCCTTGCGGAAACCACTGAGGTCTTGGCCCTGTATAG
CAAGCTTCAGCAGGTACGAGGATGCTGGTGACCAGCAAGCTTCGAAACGC
TTTCACTCTCGCAGCCAAGTGGGTTAAGGAACATCACAAAGAAGCAAATG
CGCCCAATAGCGTCCTCTTTCGGCTCTACGGGCTGTACAAGCGGTCGACA
GCCGGGGCGTGCAACGTGCGTGTGCCCACCATGCTGGTGGAGCCCATCGC
GAGagagagGTACAATTCCTGGAAATTAGCCAGCGGCTTGACGGAAGAGC
AGGCGATGCGGGCGTACCTGGACCTCGTGCGAGTCActttccccgccttt
gtAGAGGCGGCGGCCCCCGAGCTCAAGGATTTGGACGATCTACAAAgcgt
gaaggaagagaaccGGGCCCTCCTTGCGGAAACCACTGAGGTCTTGGCCC
TGTATAGCAAGCTTCAGCAGGTACGAGG
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Synonyms
Publications