EWM23515.1, cds7158 (CDS) Nannochloropsis gaditana

Overview
NameEWM23515.1
Unique Namecds7158
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:629886..629921 +
Alignment locationCM002470.1:630008..630073 +
Alignment locationCM002470.1:630259..630344 +
Alignment locationCM002470.1:630486..630704 +

Link to JBrowse

Properties
Property NameValue
End range.
End range630704
Protein idEWM23515.1
Productacyl-CoA-binding protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101458g1.9010.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:629886..629921 +
CM002470.1supercontigCM002470.1:630008..630073 +
CM002470.1supercontigCM002470.1:630259..630344 +
CM002470.1supercontigCM002470.1:630486..630704 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0000062fatty-acyl-CoA binding
Vocabulary: INTERPRO
TermDefinition
IPR014352FERM/acyl-CoA-bd_prot_3-hlx
IPR000582Acyl-CoA-binding_protein
Homology
[Close]
BLAST of EWM23515.1 vs. NCBI_GenBank
Match: gi|585104599|gb|EWM23515.1| (acyl-CoA-binding protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 278.485 bits (711), Expect = 6.854e-95
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 
Query:    1 MLVTSKLRNAFTLAAKWVKEHHKEANAPNSVLFRLYGLYKRSTAGACNVRVPTMLVEPIARERYNSWKLASGLTEEQAMRAYLDLVRVTFPAFVEAAAPELKDLDDLQSVKEENRALLAETTEVLALYSKLQQVRG 136
            MLVTSKLRNAFTLAAKWVKEHHKEANAPNSVLFRLYGLYKRSTAGACNVRVPTMLVEPIARERYNSWKLASGLTEEQAMRAYLDLVRVTFPAFVEAAAPELKDLDDLQSVKEENRALLAETTEVLALYSKLQQVRG
Sbjct:    1 MLVTSKLRNAFTLAAKWVKEHHKEANAPNSVLFRLYGLYKRSTAGACNVRVPTMLVEPIARERYNSWKLASGLTEEQAMRAYLDLVRVTFPAFVEAAAPELKDLDDLQSVKEENRALLAETTEVLALYSKLQQVRG 136
[Close]
BLAST of EWM23515.1 vs. NCBI_GenBank
Match: gi|553179102|ref|XP_005852650.1| (acyl-binding protein, partial [Nannochloropsis gaditana CCMP526] >gi|422295883|gb|EKU23182.1| acyl-binding protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 270.781 bits (691), Expect = 5.972e-92
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = 0 
Query:    1 MLVTSKLRNAFTLAAKWVKEHHKEANAPNSVLFRLYGLYKRSTAGACNVRVPTMLVEPIARERYNSWKLASGLTEEQAMRAYLDLVRVTFPAFVEAAAPELKDLDDLQSVKEENRALLAETTEVLALYSKLQQ 133
            M+VTSKLRNAFTLAAKWVKEHHKEANAPNSVLFRLYGLYKRSTAGACNVRVPTMLVEPIARERYNSWKLASGLTEEQAMRAYLDLVRVTFPAFVEAAAPELKDLDDLQSVKEENRALLAETTEVLALYSKLQQ
Sbjct:    1 MVVTSKLRNAFTLAAKWVKEHHKEANAPNSVLFRLYGLYKRSTAGACNVRVPTMLVEPIARERYNSWKLASGLTEEQAMRAYLDLVRVTFPAFVEAAAPELKDLDDLQSVKEENRALLAETTEVLALYSKLQQ 133
[Close]
BLAST of EWM23515.1 vs. NCBI_GenBank
Match: gi|124512586|ref|XP_001349426.1| (acyl CoA binding protein, putative [Plasmodium falciparum 3D7] >gi|23499195|emb|CAD51275.1| acyl-CoA binding protein, putative [Plasmodium falciparum 3D7] >gi|574995931|gb|ETW56952.1| hypothetical protein PFUGPA_01061 [Plasmodium falciparum Palo Alto/Uganda] >gi|575001435|gb|ETW61895.1| hypothetical protein PFMC_01998 [Plasmodium falciparum CAMP/Malaysia] >gi|579124314|gb|EUR72866.1| hypothetical protein PFBG_02070 [Plasmodium falciparum 7G8] >gi|583226392|gb|EWC88893.1| hypothetical protein PFNF54_02164 [Plasmodium falciparum NF54] >gi|914550764|gb|KOB63268.1| hypothetical protein PFHG_05058 [Plasmodium falciparum HB3])

HSP 1 Score: 63.5438 bits (153), Expect = 1.088e-10
Identity = 31/91 (34.07%), Postives = 51/91 (56.04%), Query Frame = 0 
Query:    7 LRNAFTLAAKWVKEHHKEANAPNSVLFRLYGLYKRSTAGACNVRVPTML-VEPIARERYNSWKLASGLTEEQAMRAYLDLVRVTFPAFVEA 96
            +R++F    ++V +  K  N    V   LY  YK+ST G CN+  P+M  +E   R++YN+WK    L  E+A + Y+D+V   FP + ++
Sbjct:    1 MRDSFNDCVQFVNKLPKTVNLSVDVKLDLYKYYKQSTVGNCNIEQPSMFKIE--DRKKYNAWKSIENLEREEAQKRYIDIVTSLFPNWKDS 89
[Close]
BLAST of EWM23515.1 vs. NCBI_GenBank
Match: gi|574977546|gb|ETW39431.1| (hypothetical protein PFNF135_06189 [Plasmodium falciparum NF135/5.C10])

HSP 1 Score: 63.1586 bits (152), Expect = 1.364e-10
Identity = 31/91 (34.07%), Postives = 51/91 (56.04%), Query Frame = 0 
Query:    7 LRNAFTLAAKWVKEHHKEANAPNSVLFRLYGLYKRSTAGACNVRVPTML-VEPIARERYNSWKLASGLTEEQAMRAYLDLVRVTFPAFVEA 96
            +R++F    ++V +  K  N    V   LY  YK+ST G CN+  P+M  +E   R++YN+WK    L  E+A + Y+D+V   FP + ++
Sbjct:    1 MRDSFNNCVQFVNKLPKTVNLSVDVKLDLYKYYKQSTVGNCNIEQPSMFKIE--DRKKYNAWKSIENLEREEAQKRYIDIVTSLFPNWKDS 89
[Close]
BLAST of EWM23515.1 vs. NCBI_GenBank
Match: gi|1084947064|ref|XP_018639818.1| (acyl-CoA binding protein [Plasmodium gaboni] >gi|1011101740|gb|KYN96352.1| acyl-CoA binding protein [Plasmodium gaboni])

HSP 1 Score: 62.003 bits (149), Expect = 4.318e-10
Identity = 29/75 (38.67%), Postives = 44/75 (58.67%), Query Frame = 0 
Query:   23 KEANAPNSVLFRLYGLYKRSTAGACNVRVPTML-VEPIARERYNSWKLASGLTEEQAMRAYLDLVRVTFPAFVEA 96
            K  N PN +   LY  YK+ST G CN+  P+M  +E   R++YN+WK    L  E+A + Y+D+V   FP + ++
Sbjct:   17 KTINLPNELKLDLYKYYKQSTVGNCNIEQPSMFKIE--DRKKYNAWKSIENLEREEAQKRYMDIVTSLFPNWKDS 89
[Close]
BLAST of EWM23515.1 vs. NCBI_GenBank
Match: gi|1145259459|ref|XP_012763049.2| (acyl-CoA binding protein, isoform 1, ACBP1 [Plasmodium reichenowi] >gi|1011102856|gb|KYN97459.1| acyl-CoA binding protein, isoform 1, ACBP1 [Plasmodium reichenowi])

HSP 1 Score: 62.003 bits (149), Expect = 5.020e-10
Identity = 27/74 (36.49%), Postives = 42/74 (56.76%), Query Frame = 0 
Query:   23 KEANAPNSVLFRLYGLYKRSTAGACNVRVPTMLVEPIARERYNSWKLASGLTEEQAMRAYLDLVRVTFPAFVEA 96
            K+ N PN +   LY  YK+ST G CN++VP+   +   R +Y +WK    L +E A + Y++LV   FP + + 
Sbjct:   17 KDVNLPNDIKLNLYKYYKQSTVGNCNIKVPSKF-KVTDRRKYEAWKSVENLNKEDAKKRYVELVSALFPYWKDG 89
[Close]
BLAST of EWM23515.1 vs. NCBI_GenBank
Match: gi|641581002|emb|CDO64442.1| (acyl-CoA binding protein, isoform 1, ACBP1 [Plasmodium reichenowi])

HSP 1 Score: 61.6178 bits (148), Expect = 6.499e-10
Identity = 27/74 (36.49%), Postives = 42/74 (56.76%), Query Frame = 0 
Query:   23 KEANAPNSVLFRLYGLYKRSTAGACNVRVPTMLVEPIARERYNSWKLASGLTEEQAMRAYLDLVRVTFPAFVEA 96
            K+ N PN +   LY  YK+ST G CN++VP+   +   R +Y +WK    L +E A + Y++LV   FP + + 
Sbjct:   17 KDVNLPNDIKLNLYKYYKQSTVGNCNIKVPSKF-KVTDRRKYEAWKSVENLNKEDAKKRYVELVSALFPYWKDG 89
[Close]
BLAST of EWM23515.1 vs. NCBI_GenBank
Match: gi|641581875|emb|CDO63868.1| (acyl-CoA binding protein, putative [Plasmodium reichenowi])

HSP 1 Score: 60.4622 bits (145), Expect = 1.844e-9
Identity = 30/91 (32.97%), Postives = 50/91 (54.95%), Query Frame = 0 
Query:    7 LRNAFTLAAKWVKEHHKEANAPNSVLFRLYGLYKRSTAGACNVRVPTML-VEPIARERYNSWKLASGLTEEQAMRAYLDLVRVTFPAFVEA 96
            + ++F    ++V +  K  N    V   LY  YK+ST G CN+  P+M  +E   R++YN+WK    L  E+A + Y+D+V   FP + ++
Sbjct:    1 MGDSFNDCVQFVNKLPKTVNLSVDVKLDLYKYYKQSTVGNCNIEQPSMFKIE--DRKKYNAWKSIENLEREEAQKRYIDIVTSLFPNWKDS 89
[Close]
BLAST of EWM23515.1 vs. NCBI_GenBank
Match: gi|1180100058|ref|WP_083619786.1| (acyl-CoA-binding protein [Mucilaginibacter sp. OK098] >gi|1110529577|emb|SHM78869.1| Acyl-CoA-binding protein [Mucilaginibacter sp. OK098])

HSP 1 Score: 60.077 bits (144), Expect = 1.998e-9
Identity = 31/80 (38.75%), Postives = 46/80 (57.50%), Query Frame = 0 
Query:    7 LRNAFTLAAKWVKEHHKEANAPNSVLFRLYGLYKRSTAGACNVRVPTMLVEPIARERYNSWKLASGLTEEQAMRAYLDLV 86
            L++AF  A K  KE   + +  N  L RLYGLYK++T G  N   P  + + +A+ +Y+SW    G+T   AM+ Y+ LV
Sbjct:    3 LKDAFEKAVKESKELPSKPD--NETLLRLYGLYKQATEGDINTENPPGMFDFVAKAKYDSWLKLKGITAGDAMQQYISLV 80
[Close]
BLAST of EWM23515.1 vs. NCBI_GenBank
Match: gi|574748993|gb|ETW17279.1| (hypothetical protein PFFVO_03823 [Plasmodium falciparum Vietnam Oak-Knoll (FVO)] >gi|574972926|gb|ETW35134.1| hypothetical protein PFTANZ_04182 [Plasmodium falciparum Tanzania (2000708)] >gi|574979608|gb|ETW41387.1| hypothetical protein PFNF135_04373 [Plasmodium falciparum NF135/5.C10] >gi|574986582|gb|ETW47896.1| hypothetical protein PFMALIP_04084 [Plasmodium falciparum MaliPS096_E11] >gi|574999526|gb|ETW60013.1| hypothetical protein PFMC_04189 [Plasmodium falciparum CAMP/Malaysia] >gi|579118791|gb|EUR67458.1| hypothetical protein PFBG_04138 [Plasmodium falciparum 7G8] >gi|579331113|gb|EUT82032.1| hypothetical protein PFAG_04214 [Plasmodium falciparum Santa Lucia] >gi|583213508|gb|EWC75053.1| hypothetical protein C923_04282 [Plasmodium falciparum UGT5.1] >gi|914552603|gb|KOB64314.1| hypothetical protein PFHG_05601 [Plasmodium falciparum HB3])

HSP 1 Score: 60.077 bits (144), Expect = 2.238e-9
Identity = 28/86 (32.56%), Postives = 44/86 (51.16%), Query Frame = 0 
Query:   11 FTLAAKWVKEHHKEANAPNSVLFRLYGLYKRSTAGACNVRVPTMLVEPIARERYNSWKLASGLTEEQAMRAYLDLVRVTFPAFVEA 96
            F  +  ++    K  N PN +   LY  YK+ST G CN++ P+   + + R +Y +WK    L  E A R Y++LV   FP + + 
Sbjct:    5 FEESVSFINSVPKNVNLPNDIKLNLYKYYKQSTIGNCNIKEPSRF-KVVDRRKYEAWKSVENLNREDAKRRYVELVSALFPYWQDG 89
The following BLAST results are available for this feature:
BLAST of EWM23515.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104599|gb|EWM23515.1|6.854e-95100.00acyl-CoA-binding protein, partial [Nannochloropsis... [more]
gi|553179102|ref|XP_005852650.1|5.972e-9299.25acyl-binding protein, partial [Nannochloropsis gad... [more]
gi|124512586|ref|XP_001349426.1|1.088e-1034.07acyl CoA binding protein, putative [Plasmodium fal... [more]
gi|574977546|gb|ETW39431.1|1.364e-1034.07hypothetical protein PFNF135_06189 [Plasmodium fal... [more]
gi|1084947064|ref|XP_018639818.1|4.318e-1038.67acyl-CoA binding protein [Plasmodium gaboni] >gi|1... [more]
gi|1145259459|ref|XP_012763049.2|5.020e-1036.49acyl-CoA binding protein, isoform 1, ACBP1 [Plasmo... [more]
gi|641581002|emb|CDO64442.1|6.499e-1036.49acyl-CoA binding protein, isoform 1, ACBP1 [Plasmo... [more]
gi|641581875|emb|CDO63868.1|1.844e-932.97acyl-CoA binding protein, putative [Plasmodium rei... [more]
gi|1180100058|ref|WP_083619786.1|1.998e-938.75acyl-CoA-binding protein [Mucilaginibacter sp. OK0... [more]
gi|574748993|gb|ETW17279.1|2.238e-932.56hypothetical protein PFFVO_03823 [Plasmodium falci... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7175rna7175Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications