rna7174, rna7174 (mRNA) Nannochloropsis gaditana

Overview
Namerna7174
Unique Namerna7174
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length776
Alignment locationCM002470.1:625386..627678 +

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Properties
Property NameValue
Productalpha beta hydrolase fold protein
Orig transcript idgnl|cribi|Naga_101326g1.2175.mrna
Orig protein idgnl|cribi|Naga_101326g1.2175
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:625386..627678 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101326g1gene6936Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7174rna7174-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23516.1cds7157Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7174 ID=rna7174|Name=rna7174|organism=Nannochloropsis gaditana|type=mRNA|length=776bp
TTCCAACCGTGATGCCATGTGCTTCAGTGAAATTGTTAATCGTGCGTCAT
TTCACTCTCCACGGAAATCAGCATTTCGGAGCTTTGTGTGGTTTTATTTA
TCTTGTGACGATCCCTTCCAAGAACGCTTTCGTCACCTCTCCGAGGCGTC
TCCGTCATAAACCATTTCCAGGCTCTTTTGTACAATCTGCCCGCACCTAA
AACTAGAAAGGGCGTTGTCTTAACTGTTTTCTCACGCTTTTTACACCCTC
GAACCGCTTTCCATGGACAGACGTGCGGGTTTTGCTGCCTAAAGCCCCCC
ACGGGGCAGTCATTTGTGAGGAGAAGTGCTGCTAGCTACTGCTCGGGCGC
AGGAGTCCTGAGGGTGCCATGGCCTCTCTCCAATCGCCGCCACAACCAAA
GCTGGTCTTCCTCCTCCTCGTTGCCGTACTCTGTAGACATACCAGCTATG
CTTTCGTCTTCCCTTCGCATTTAACGGCCTCGCTAGGATCTGGAGGACCC
TCGCAACTCCTTCCCGCCCTAAAGCCGGCGACCCTCCCGTCGGCCCCCGT
CGCACACCCCCTCCCATCCCTGCACTATCTGGACCTAAATCGACGAGAAG
ACACAAAGGACCACCTCCCCGTCCTGGTCCTGCACGGCTTGCTAGGATCT
TCGCGCAATTTTCGCGGGTGGGCAAATACCCTGCACGAGCGCCTCGAGAA
GCCACGTCGCATCCTTGTACCAGACTTGAGGAACCACGGGCGCTCCCCCC
ACGTCGCGGGCATGAGCTACAGGTAG
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protein sequence of rna7174

>rna7174-protein ID=rna7174-protein|Name=rna7174|organism=Nannochloropsis gaditana|type=polypeptide|length=149bp
MRPQVISLLSSLPLSSLSTKNEVDRALQEKGLLDGGMRAFALTNVVQGEA
GVRWEINLAGIESALPEIAAFDVGGDDSTSCSTAYPHKTLFLNGGKSKYL
RTAHLSTIAQLFPTFSLATIRDAGHWVHAEKPEETLNIIQRYLDEELEE
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mRNA from alignment at CM002470.1:625386..627678+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7174 ID=rna7174|Name=rna7174|organism=Nannochloropsis gaditana|type=mRNA|length=2293bp|location=Sequence derived from alignment at CM002470.1:625386..627678+ (Nannochloropsis gaditana)
catccctcctcccatgcgGCCACAGGTGATCTCCcttttgtcctccctcc
ccctctcctccttgtcgacgAAAAACGAGGTCGACCGGGCGCTGCAAGAA
AAGGGCCTATTGGACGGGGGCATGCGAGCCTTCGCCCTCACGAACGTGgt
gcagggggaggcaggcgtcCGGTGGGAGATCAACCTGGCGGGGATCGAGA
GGtgaacagggagggagggagggagggagggagggaaggagggagggcgg
ggagggtcaGGAGATCCCAAAgggtttggggggggggggtcaaAGTCTTG
TGTCGGCGAGGTGGCCAgtcttcctccgggtatctGATCGTCCCCTCCAT
GTCATGTTTCTCTCTCGGTACCCACAGTGCCCTCCCCGAAATCGCGGCCT
TTgacgtgggcggggacgacTCCACCAGCTGCAGCACTGCCTACCCGCAC
AAGACCCTGTTCTTgaacggggggaagagcaaATACCTCCGGACCGCGCA
CCTGTCCACCATTGCGCAGCTGTTTCCGACTTTTTCCTTGGGTAGGtgaa
aggaggtgggaagaagaaTGGAAAGAATGCTTGCTTGAGCAGTGTTTTAT
ACTATCCTTGCTTGCAAACTACGAGAAATCACAAAAATTGGATTGTCTTT
CGTATGCTTGTTTTTTTCTCGGAACAGTCCTAGTCTGGCCATTTTTTTAC
CCGTTAAGATACCGTTCCCATTTCCACTGTCCTCTCTTTTCCAGCCACCA
TCAGAGATGCCGGCCACTGGGTGCACGCGGAGAAGCCTGAGGAAACGTTA
AACATAATTCAACGTTATCTCGAcgaggaattggaggagtGAGGCGATAC
CGTGGTCGGAGGAGTCGTAAGCCTTTGTATTCATAAGCAAAAGAAACTTG
AGATATGCGATAGATGAGCATGGGGATGGgtcgagaagaggggaaaatgt
gTCATTATGATTAGGGTGGAGATTTGGGAGGTTAAACCATCGATATGTAC
AGTCCACAAGCGGTCTCAAGTAGCAAAAGGCTGACTGTaatatttttttt
taagGCCCTATTTGTTTACTAACCGAAGTACCGTCTATACGAAGAAGGAT
ATTTAATTTTTGGCAGTACTGCTCCTTGAGGTTGCAATCTCATGCTTCCA
AACAGCAAGGTAGCCGTGACTTAAGAAAAACCGTTACAAATTTGAATGAC
CGTTAAGCCAATACCGTTTCGAATGCCCACGAGCGAGGAACCAATTTAGC
TAATTGTTGCCCTGTTTCTCGCCCTAGCTTCTAGGTCGGGGAGAAATCTC
GTATTGAATCTCTTATGCAATTTTTCTTGCGCTGCTCAGAATTTGAAAGT
CCTTAATTACATGGCACGTGCGCTTTCCTTGTCTTTGACCCTCCCATGTG
CCCATCGTGTTTTGCTTGTCAAGCATCCCTTTCCGTTCGCAACTCAGGCA
GGAAGTGTATAGAGAGCAGTGCACTGCACTTACCTTACCTGTATCTAGTT
TTTGCTCGCTGTGTCTGACTTTGGACTGCAGTCTTGAAATCCGTTGGCGT
AGGCATCTACTGAAAAGAAAATTACACCTCAACTGAGTTGGACGGGCAAT
AGTCAGATCTCTTTTGCAATATTATCATCGTTGACATCATTTATCTCAGT
TACTGTGTATAATTCAATCATCCAGGCCAAATTCTAGAAAACGGGGACGC
TAACTACACGCGTGCCCACAAGGCTCCGCAAGTAGAATGTCGGAGAAGCC
ATGTAGGTTTAGTACTGGCATCTTATTGCATCGCATGGCCTTTAACGCTG
TTTCAATCACCTTTCTGATCTTTTTCCGCAGATGGAGGCACGGTTCCGGG
AGATGTGGTAATGATCAGTGGGTAAGTTCGTAAAAGAGAGAGACCCTTGC
CCGCCCACGACGGGCCTTCCCTCTGCTACATCCTTTCTCATCGAGCTACT
TCTTTCCTGTTACATCATATCTTAAATTAATTGATTTCATCGCGTGCTTT
CGAATTTGTAACTTCTCGTGGATTCCTTTCAAATTCCAATGTTTCCCTTG
TCGTACGCACAGATACTTGCATAAGAAGACACGGGACGGTCGGTGGCAGA
AGCGGTGGTTCGAGACAAATGGGTGCTTCTTGACCTACTATAAGGTAAGA
TATAagacgagaaagaaaagTAAGGACGGCGATGGCGTGAAcaagggaag
atgagggaggagagggaaaagatgagaagGGCTGCGGATGGCTCTTGATA
TGACgcgtgagagggagagggagtgaggtCCCAGGAGCACGGT
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Coding sequence (CDS) from alignment at CM002470.1:625386..627678+

>rna7174 ID=rna7174|Name=rna7174|organism=Nannochloropsis gaditana|type=CDS|length=1350bp|location=Sequence derived from alignment at CM002470.1:625386..627678+ (Nannochloropsis gaditana)
atgcgGCCACAGGTGATCTCCcttttgtcctccctccccctctcctcctt
gtcgacgAAAAACGAGGTCGACCGGGCGCTGCAAGAAAAGGGCCTATTGG
ACGGGGGCATGCGAGCCTTCGCCCTCACGAACGTGgtgcagggggaggca
ggcgtcCGGTGGGAGATCAACCTGGCGGGGATCGAGAGTGCCCTCCCCGA
AATCGCGGCCTTTgacgtgggcggggacgacTCCACCAGCTGCAGCACTG
CCTACCCGCACAAGACCCTGTTCTTgaacggggggaagagcaaATACCTC
CGGACCGCGCACCTGTCCACCATTGCGCAGCTGTTTCCGACTTTTTCCTT
GGCCACCATCAGAGATGCCGGCCACTGGGTGCACGCGGAGAAGCCTGAGG
AAACGTTAAACATAATTCAACGTTATCTCGAcgaggaattggaggagtGA
atgcgGCCACAGGTGATCTCCcttttgtcctccctccccctctcctcctt
gtcgacgAAAAACGAGGTCGACCGGGCGCTGCAAGAAAAGGGCCTATTGG
ACGGGGGCATGCGAGCCTTCGCCCTCACGAACGTGgtgcagggggaggca
ggcgtcCGGTGGGAGATCAACCTGGCGGGGATCGAGAGTGCCCTCCCCGA
AATCGCGGCCTTTgacgtgggcggggacgacTCCACCAGCTGCAGCACTG
CCTACCCGCACAAGACCCTGTTCTTgaacggggggaagagcaaATACCTC
CGGACCGCGCACCTGTCCACCATTGCGCAGCTGTTTCCGACTTTTTCCTT
GGCCACCATCAGAGATGCCGGCCACTGGGTGCACGCGGAGAAGCCTGAGG
AAACGTTAAACATAATTCAACGTTATCTCGAcgaggaattggaggagtGA
atgcgGCCACAGGTGATCTCCcttttgtcctccctccccctctcctcctt
gtcgacgAAAAACGAGGTCGACCGGGCGCTGCAAGAAAAGGGCCTATTGG
ACGGGGGCATGCGAGCCTTCGCCCTCACGAACGTGgtgcagggggaggca
ggcgtcCGGTGGGAGATCAACCTGGCGGGGATCGAGAGTGCCCTCCCCGA
AATCGCGGCCTTTgacgtgggcggggacgacTCCACCAGCTGCAGCACTG
CCTACCCGCACAAGACCCTGTTCTTgaacggggggaagagcaaATACCTC
CGGACCGCGCACCTGTCCACCATTGCGCAGCTGTTTCCGACTTTTTCCTT
GGCCACCATCAGAGATGCCGGCCACTGGGTGCACGCGGAGAAGCCTGAGG
AAACGTTAAACATAATTCAACGTTATCTCGAcgaggaattggaggagtGA
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Synonyms
Publications