rna7173, rna7173 (mRNA) Nannochloropsis gaditana

Overview
Namerna7173
Unique Namerna7173
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length719
Alignment locationCM002470.1:623377..624581 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101003g1.7578.mrna
Orig protein idgnl|cribi|Naga_101003g1.7578
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:623377..624581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101003g1gene6935Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7173rna7173-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23518.1cds7156Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7173 ID=rna7173|Name=rna7173|organism=Nannochloropsis gaditana|type=mRNA|length=719bp
GTCACCTTTCACCACAGGCATGCGACCACATCCCCTCCTCCTTCCATTCC
TTCTTCTTATATCGTCATTCGTTGTCAGCCATGCTTTTTTGCCCCCACCT
CTCCTACCCTCGTCTCCGATAACCCCCTCCACTGTGACAGCCCTCTCTCC
CGGGAAGCCGAATTTAGGAAAAGGCGGCGCCGTGCTCCAAAAGCCCCAGC
TACAAACCGCCACCCGCGTGGGCCCCCCCAAGAACAAGGAGAAGACCGAG
GAGCGGTTCGAGACGAAGGAGGAGGAGAGCGAGAAGTTCGCGGTGGTCTT
GGTCGGTGACAAAGACTACGACCAGGGGCATGTCGTCAAGGTCCTGTGCA
AGGTCATCGCGGGCCTGGGTGCGATGAAGGCCGTGGCAGCTTTTCAAGAG
GCGCAGAGCAAAGGGAAAGCCATCGTCCTCATCGCGGACGAGGAGAGCGC
GGAGACGGTGGCGGAGCTCATCTGTCGCAACAAGCCCCCCGTGATCGCTG
ACGTGGAGCCGTTGAGGAAGGGGGATTAAGGTGGAGGGAGGGAGGGAGGG
AGGGGGATGTGCAGTGGGGGGATGAGGTAGGAGGGAGGAGGGGAGGAAGG
AGGCGTGGCTGGGGACGGAGGAGGGAGGGAGGGAGGGAGGGAGGAGGGAG
AAAAGAGGCAAGGAGCATGCTGCCGATGAGGAGGAAGAGAATGGGGTGAT
TTAAAAGATTTAATCTGGA
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protein sequence of rna7173

>rna7173-protein ID=rna7173-protein|Name=rna7173|organism=Nannochloropsis gaditana|type=polypeptide|length=135bp
MASLQSPPQPKLVFLLLVAVLCRHTSYAFVFPSHLTASLGSGGPSQLLPA
LKPATLPSAPVAHPLPSLHYLDLNRREDTKDHLPVLVLHGLLGSSRNFRG
WANTLHERLEKPRRILVPDLRNHGRSPHVAGMSYR
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mRNA from alignment at CM002470.1:623377..624581+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7173 ID=rna7173|Name=rna7173|organism=Nannochloropsis gaditana|type=mRNA|length=1205bp|location=Sequence derived from alignment at CM002470.1:623377..624581+ (Nannochloropsis gaditana)
TTCCAACCGTGATGCCATGTGCTTCAGTGAAATTGTTAATCGTGCGTCAT
TTCACTCTCCACGGAAATCAGCATTTCGGAGCTTTGTGTGGTTTTATTTA
TCTTGTGACGATCCCTTCCAAGAACGCTTTCGTCACCTCTCCGAGGCGTC
TCCGTCATAAACCATTTCCAGGCTCTTTTGTACAATCTGCCCGCACCTAA
AACTAGAAAGGGCGTTGTCTTAACTGTTTTCTCACGCTTTTTACACCCTC
GAACCGCTTTCCATGGACAGACGTGCGGGTTTTGCTGCCTAAAGCCCCCC
ACGGGGCAGTCATTTGTGAGGAGAAGTGCTGCTAGCTACTGCTCGGGCGC
AGGAGTCCTGAGGGTGCCATGGCCTCTCTCCAATCGCCGCCACAACCAAA
gctggtcttcctcctcctcgttgccgTACTCTGTAGACATACCAGCTATG
CTTTCGTCTTCCCTTCGCATTTAACGGCCTCGCTAGGATCTGGAGGACCC
TCGCaactccttcccgccctaaAGCCGGCGACCCTCCCGTCGGCCCCCGT
CGCacaccccctcccatccctgcaCTATCTGGACCTAAATCGACGAGAAG
ACACAAAGGTGAGGGGTATTTTGAGTATGTTCAGTTATTCACGGATTTTC
TTGGCAGAGGGCATTCGAAGTGGCTTCCAGGAGACCCCATGCTTGTATCA
CTCCCGTGGCATGAGAGGACTAGAACGGCCTCAATCGGCACCTTATAGAT
CACTATCAGTGCCCTTTGCGTCCTTGAGAAAGCATTTGAGAGATGTGGCG
GTCCACCGTTCGTCACGTCCATGGCCGCAACCGCTGACGCAGGACTTTCG
ACGCTCGAGTCCTCTCACTTTTTCCCTGATCAGCCGGCCCTACTATGATT
GAACACTTTGAATCCAGTCAGAGACAAGCCTGATTGCTCGAAGCCAACTT
CTTTATCTCGGTGCATCGCCCGCGGTCGACGCGGACTGGCCCCTGGttca
cccgtccctccccctcctccccctccaatcCCATCAGgaccacctccccg
tcctggtCCTGCACGGCTTGCTAGGatcttcgcgcaattttcgcGGGTGG
GCAAATACCCTGCACGAGCGCCTCGAGAAGCCACGTCGCATCCTTGTACC
AGACTTGAGGAACCACGGGCGCTCCCCCCACGTCGCGGGCATGAGCTACA
GGTAG
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Coding sequence (CDS) from alignment at CM002470.1:623377..624581+

>rna7173 ID=rna7173|Name=rna7173|organism=Nannochloropsis gaditana|type=CDS|length=816bp|location=Sequence derived from alignment at CM002470.1:623377..624581+ (Nannochloropsis gaditana)
ATGGCCTCTCTCCAATCGCCGCCACAACCAAAgctggtcttcctcctcct
cgttgccgTACTCTGTAGACATACCAGCTATGCTTTCGTCTTCCCTTCGC
ATTTAACGGCCTCGCTAGGATCTGGAGGACCCTCGCaactccttcccgcc
ctaaAGCCGGCGACCCTCCCGTCGGCCCCCGTCGCacaccccctcccatc
cctgcaCTATCTGGACCTAAATCGACGAGAAGACACAAAGgaccacctcc
ccgtcctggtCCTGCACGGCTTGCTAGGatcttcgcgcaattttcgcGGG
TGGGCAAATACCCTGCACGAGCGCCTCGAGAAGCCACGTCGCATCCTTGT
ACCAGACTTGAGGAACCACGGGCGCTCCCCCCACGTCGCGGGCATGAGCT
ACAGGTAGATGGCCTCTCTCCAATCGCCGCCACAACCAAAgctggtcttc
ctcctcctcgttgccgTACTCTGTAGACATACCAGCTATGCTTTCGTCTT
CCCTTCGCATTTAACGGCCTCGCTAGGATCTGGAGGACCCTCGCaactcc
ttcccgccctaaAGCCGGCGACCCTCCCGTCGGCCCCCGTCGCacacccc
ctcccatccctgcaCTATCTGGACCTAAATCGACGAGAAGACACAAAGga
ccacctccccgtcctggtCCTGCACGGCTTGCTAGGatcttcgcgcaatt
ttcgcGGGTGGGCAAATACCCTGCACGAGCGCCTCGAGAAGCCACGTCGC
ATCCTTGTACCAGACTTGAGGAACCACGGGCGCTCCCCCCACGTCGCGGG
CATGAGCTACAGGTAG
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Synonyms
Publications