EWM23518.1, cds7156 (CDS) Nannochloropsis gaditana

Overview
NameEWM23518.1
Unique Namecds7156
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:623745..623984 +
Alignment locationCM002470.1:624414..624581 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23518.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101003g1.7578.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:623745..623984 +
CM002470.1supercontigCM002470.1:624414..624581 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR029058AB_hydrolase
IPR000073AB_hydrolase_1
Homology
BLAST of EWM23518.1 vs. NCBI_GenBank
Match: gi|585104604|gb|EWM23518.1| (hypothetical protein Naga_101003g1 [Nannochloropsis gaditana])

HSP 1 Score: 268.47 bits (685), Expect = 5.754e-91
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
Query:    1 MASLQSPPQPKLVFLLLVAVLCRHTSYAFVFPSHLTASLGSGGPSQLLPALKPATLPSAPVAHPLPSLHYLDLNRREDTKDHLPVLVLHGLLGSSRNFRGWANTLHERLEKPRRILVPDLRNHGRSPHVAGMSYR 135
            MASLQSPPQPKLVFLLLVAVLCRHTSYAFVFPSHLTASLGSGGPSQLLPALKPATLPSAPVAHPLPSLHYLDLNRREDTKDHLPVLVLHGLLGSSRNFRGWANTLHERLEKPRRILVPDLRNHGRSPHVAGMSYR
Sbjct:    1 MASLQSPPQPKLVFLLLVAVLCRHTSYAFVFPSHLTASLGSGGPSQLLPALKPATLPSAPVAHPLPSLHYLDLNRREDTKDHLPVLVLHGLLGSSRNFRGWANTLHERLEKPRRILVPDLRNHGRSPHVAGMSYR 135          
BLAST of EWM23518.1 vs. NCBI_GenBank
Match: gi|553177282|ref|XP_005852450.1| (hypothetical protein NGA_0680800, partial [Nannochloropsis gaditana CCMP526] >gi|422296082|gb|EKU23381.1| hypothetical protein NGA_0680800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 204.142 bits (518), Expect = 5.417e-66
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 0
Query:    1 MASLQSPPQPKLVFLLLVAVLCRHTSYAFVFPSHLTASLGSGGPSQLLPALKPATLPSAPVAHPLPSLHYLDLNRREDTKDHLPVLVLHGLLGSSRNFRGWANTL 105
            MASLQSP QPKLVFLLLVAVLCRHTSYAFVFPSHLTASLGSGGPSQLLPALKPATLPSAPVAHPLPSLHYLDLNRREDTKDHLPVLVLHGLLGSSRNFRGWANTL
Sbjct:    1 MASLQSPLQPKLVFLLLVAVLCRHTSYAFVFPSHLTASLGSGGPSQLLPALKPATLPSAPVAHPLPSLHYLDLNRREDTKDHLPVLVLHGLLGSSRNFRGWANTL 105          
BLAST of EWM23518.1 vs. NCBI_GenBank
Match: gi|299472645|emb|CBN78297.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 75.0998 bits (183), Expect = 2.842e-13
Identity = 38/96 (39.58%), Postives = 54/96 (56.25%), Query Frame = 0
Query:   41 SGGPSQLLPALKPATLPSAPVAHPLPS--LHYLDLNRREDTKDHLPVLVLHGLLGSSRNFRGWANTLHERLEKPRRILVPDLRNHGRSPHVAGMSY 134
            SGGPS    A   ++     VA P  +  L  +D N    +    PV+++HGLLG+SRNF+GW   L + L++ RR+   D+RNHG S H   M+Y
Sbjct:   72 SGGPSMSAGAAVLSSSTKKKVARPAGAAKLESIDFNPSASSSSFTPVVIMHGLLGNSRNFQGWGAKLVKSLDQERRVFAVDMRNHGASSHHDSMTY 167          
BLAST of EWM23518.1 vs. NCBI_GenBank
Match: gi|496388472|ref|WP_009097462.1| (alpha/beta hydrolase [Halomonas sp. GFAJ-1] >gi|359297266|gb|EHK61502.1| alpha/beta hydrolase fold protein [Halomonas sp. GFAJ-1])

HSP 1 Score: 70.4774 bits (171), Expect = 6.349e-12
Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 0
Query:   67 SLHYLDLNRREDTKDHLPVLVLHGLLGSSRNFRG----WANTLHERLEKPRRILVPDLRNHGRSPHVAGMSYR 135
             LH +DL   + + D LP++V+HGLLGS+ N+R     W  T        RR++  DLRNHGRSPHV GMSY+
Sbjct:    8 ELHVIDLPAEQGSHDQLPLVVIHGLLGSADNWRSHLKVWQQT--------RRVIAVDLRNHGRSPHVEGMSYK 72          
BLAST of EWM23518.1 vs. NCBI_GenBank
Match: gi|497410144|ref|WP_009724342.1| (alpha/beta hydrolase [Halomonas sp. TD01] >gi|338763635|gb|EGP18624.1| alpha/beta hydrolase fold protein [Halomonas sp. TD01])

HSP 1 Score: 67.781 bits (164), Expect = 7.079e-11
Identity = 34/72 (47.22%), Postives = 44/72 (61.11%), Query Frame = 0
Query:   63 HPLPSLHYLDLNRREDTKDHLPVLVLHGLLGSSRNFRGWANTLHERLEKPRRILVPDLRNHGRSPHVAGMSY 134
            H    L+ +DL       D LPV+V+HGLLGS+ N+R          ++ RR++  DLRNHGRSPHV GMSY
Sbjct:    4 HANVDLYVIDLPAESGGDDQLPVVVIHGLLGSADNWRSHLKVW----QRSRRVIAVDLRNHGRSPHVEGMSY 71          
BLAST of EWM23518.1 vs. NCBI_GenBank
Match: gi|1178482186|ref|WP_083004022.1| (alpha/beta hydrolase [Halomonas sp. GT])

HSP 1 Score: 67.3958 bits (163), Expect = 8.680e-11
Identity = 32/68 (47.06%), Postives = 43/68 (63.24%), Query Frame = 0
Query:   67 SLHYLDLNRREDTKDHLPVLVLHGLLGSSRNFRGWANTLHERLEKPRRILVPDLRNHGRSPHVAGMSY 134
             L+ +DL     + D LP++V+HGLLGS+ N+R      H    + RR++  DLRNHGRSPH  GMSY
Sbjct:    8 DLYVIDLPDESGSDDQLPIVVIHGLLGSADNWRSHLKVWH----RSRRVVAVDLRNHGRSPHAEGMSY 71          
BLAST of EWM23518.1 vs. NCBI_GenBank
Match: gi|1110720273|ref|WP_071946080.1| (alpha/beta hydrolase [Halomonas aestuarii] >gi|1108540536|gb|APE32186.1| alpha/beta hydrolase [Halomonas aestuarii])

HSP 1 Score: 67.0106 bits (162), Expect = 1.047e-10
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 0
Query:   71 LDLNRREDTKDHLPVLVLHGLLGSSRNFRGWANTLHERLEKPRRILVPDLRNHGRSPHVAGMSYR 135
            +DLN  +   D  P++V+HGLLGS+ N+R  A     R    RR++  DLRNHGRSPHVAGM Y 
Sbjct:    3 IDLNFTDTGGDGTPLVVVHGLLGSADNWRSHAKQWQRR----RRVIAVDLRNHGRSPHVAGMGYE 63          
BLAST of EWM23518.1 vs. NCBI_GenBank
Match: gi|662121164|ref|WP_030073078.1| (alpha/beta hydrolase [Halomonas alkaliantarctica])

HSP 1 Score: 65.855 bits (159), Expect = 3.191e-10
Identity = 31/68 (45.59%), Postives = 43/68 (63.24%), Query Frame = 0
Query:   67 SLHYLDLNRREDTKDHLPVLVLHGLLGSSRNFRGWANTLHERLEKPRRILVPDLRNHGRSPHVAGMSY 134
             L+ +DL     + D LP++V+HGLLGS+ N+R          ++ RR++  DLRNHGRSPH  GMSY
Sbjct:    8 DLYIIDLPDESGSDDQLPIVVIHGLLGSADNWRSHLKVW----QRSRRVIAVDLRNHGRSPHAEGMSY 71          
BLAST of EWM23518.1 vs. NCBI_GenBank
Match: gi|515999813|ref|WP_017430396.1| (hypothetical protein [Halomonas jeotgali])

HSP 1 Score: 65.855 bits (159), Expect = 3.569e-10
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 0
Query:   56 LPSAPVAHPLPSLHYLDLNRREDT---KDHLPVLVLHGLLGSSRNFRGWANTLHERLEKPRRILVPDLRNHGRSPHVAGMSY 134
            +PSA    P+ +L+ +D   RED+   ++ LP++++HGLLGS  N+R      H +    RR++  DLRNHGRSPH  GMSY
Sbjct:    1 MPSAHAPSPV-ALYCIDSADREDSAPPEEELPLVIIHGLLGSGDNWRSHIRAWHSQ----RRVVAVDLRNHGRSPHAEGMSY 77          
BLAST of EWM23518.1 vs. NCBI_GenBank
Match: gi|1123863816|ref|WP_074396328.1| (alpha/beta hydrolase [Halomonas sp. HL-93] >gi|938286733|gb|KPQ21137.1| putative hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [Halomonas sp. HL-93] >gi|1036083979|emb|SBR48694.1| esterase [Halomonas sp. HL-93])

HSP 1 Score: 65.4698 bits (158), Expect = 4.937e-10
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = 0
Query:   67 SLHYLDLNRREDTKDHLPVLVLHGLLGSSRNFRGWANTLHERLEKPRRILVPDLRNHGRSPHVAGMSY 134
             LHYLD    ++  D +P++V+HGLLGS+ N+R    T     +  RR++  DLRNHGRSPH AGMSY
Sbjct:    8 DLHYLD-QPSDEHPDAIPLVVIHGLLGSADNWRSHLKTW----QTSRRVIAVDLRNHGRSPHAAGMSY 70          
The following BLAST results are available for this feature:
BLAST of EWM23518.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104604|gb|EWM23518.1|5.754e-91100.00hypothetical protein Naga_101003g1 [Nannochloropsi... [more]
gi|553177282|ref|XP_005852450.1|5.417e-6699.05hypothetical protein NGA_0680800, partial [Nannoch... [more]
gi|299472645|emb|CBN78297.1|2.842e-1339.58conserved unknown protein [Ectocarpus siliculosus][more]
gi|496388472|ref|WP_009097462.1|6.349e-1247.95alpha/beta hydrolase [Halomonas sp. GFAJ-1] >gi|35... [more]
gi|497410144|ref|WP_009724342.1|7.079e-1147.22alpha/beta hydrolase [Halomonas sp. TD01] >gi|3387... [more]
gi|1178482186|ref|WP_083004022.1|8.680e-1147.06alpha/beta hydrolase [Halomonas sp. GT][more]
gi|1110720273|ref|WP_071946080.1|1.047e-1050.77alpha/beta hydrolase [Halomonas aestuarii] >gi|110... [more]
gi|662121164|ref|WP_030073078.1|3.191e-1045.59alpha/beta hydrolase [Halomonas alkaliantarctica][more]
gi|515999813|ref|WP_017430396.1|3.569e-1043.90hypothetical protein [Halomonas jeotgali][more]
gi|1123863816|ref|WP_074396328.1|4.937e-1050.00alpha/beta hydrolase [Halomonas sp. HL-93] >gi|938... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7173rna7173Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications