rna7172, rna7172 (mRNA) Nannochloropsis gaditana

Overview
Namerna7172
Unique Namerna7172
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1806
Alignment locationCM002470.1:621897..623076 -

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Properties
Property NameValue
Productconserved unknown protein
Orig transcript idgnl|cribi|Naga_101003g2.7577.mrna
Orig protein idgnl|cribi|Naga_101003g2.7577
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:621897..623076 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101003g2gene6934Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7172rna7172-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23517.1cds7155Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7172 ID=rna7172|Name=rna7172|organism=Nannochloropsis gaditana|type=mRNA|length=1806bp
AGGGCCCGAGGATAGTACTGTCTTCAAGAGCGTGGCTTGGAGAAGCGTGG
AGGGAGTATACACGCCCCCCAGTGACCTCGACCTTGTCGGAGATACCATA
ACATTATACGTTCGCCATGCCTCAAGGCGAGAACTGTGGTGATTCCGTCA
CAATCCGTACTCCGGCCAGTATTTCAATCATACCAACGACGGAAAGTACT
GTAAGTAAATCCTTTACCTTGGACGCGCAGCTACAGAACCACGAAGGCAG
CGATGAGTGCAATCGTTGCCAGGCGCCCACATCGTGCGAGAGCAAGCACA
ATAGCTGTCCAAACACTGACATCAACGCCACTGGTCATTCAATTAAAATG
GAATCGTACATTGTTGACATGTCCGCACACAATGGTTTACGAGGCGTGTG
TGCCCTGTGGGTGGTTTTGGCCCACTGCGTCGCTAATTATGTAAAGATGA
ATGGTGAGTGCCACGCAGTCCGGAAATAAAGACATCTCACTCCTACCAAA
GATTAGCGCAGGCACAATTCGTGAACATACCTGCGTCTCAAGTTTGCTCT
CTTCCTGGTGGGAAAGTTTCCGCGAGCATGGGCCGGGACGCTTGGCTTGG
AGACTCGTCGATTCTCCTCTCACTTTCTTGCATGCCCCCGTACCCTCATC
ACGCAGCGTCCAGCATCATGCCTCTGTTCTTCATGTTGTCAGCCTTCTCT
TTGACAGCAACCTACGGCCGCACAAACTGGGCACCTCCTCTTTCCCACCC
CTCGCCCACCCCCTCCCCCTCCCCCACGTCCTCCCCCTCCTCCTCCTCCT
CCTCCTCCTCCGCTTCCTCCCCGTGGTCCTCTCTTCCGACCTTTCCGTCG
CTCCTTTCCACCGGCTGCTCCTTCCTCTCCTCCCTCCTTTTGAGGTGTCG
CCGGGGCCGTGTCTCTTCCTCCATCCCCGCCCCCGCCCTCTCGGCTACCT
TGGAAGACGGGCTCCTCCCCTCCCTTCCTCTTTCCCTCCCTCCCTTCCCT
TGCCGGCCTTTCTACCAGAATCGCTTCGCCCGCGTCCTTCCCATGTACTG
GCTCTGCCTCCTTTTGCCTCTCCCGCTCACCCTCTTGGGTCTGGAACGCT
TCCCTTTTTCCCTCTCCACCTTCCTCCCCTCCCTCCTCGTCACCCTCTTC
CCCTGCGCCACGCTCCTTTCCTTCCTAGGCATGGACACAACATTCTACGT
CTTGAACGGCCCAGGCTGGTTCGTTTGCACCCTCGTGTGGTTCTGGGTAG
CCTTCCCTTTCCTCCTTCCGTGGGCGCAGCGCCTCTCGTCCCTTCAACTC
CGGGAGCGCGTCGTTTTCCATTATTACCTGCAGCTTGGCTTGATGCTGGG
AATCTACCTCCTGATCAATGCCACGCAGGGACGCACACCCTACGCATTCA
ATACGGCCGCCAAGAACCCGGTGGTTCGCTTCCCTCTCTTCCTCATGGGG
ATCTACGCGGGGCTGTTGGCGTTGCGCCACCCCCCCCCTCCCTCCCTTCC
TCCCTCCCTCCCTTCCTCCCTCCATCCCGCCGGTGGCGTACCCTTGCCTA
TGGGGAGAAGCGAGGCAGAAGGGGAGGACGAAGGGAGGGAGGGAAGGAAG
GAGGGGGCGGCAGGTGCATCGACAGGGGCGCAGGTGGACCCCGTTCTGGT
CGAGGCACAGGCGGAAGAGGAGGGAGTGACCGGAGGGAGGACGTTACCTG
GAGACATAGCAGACAAGGCGCAGGGGGCGAGGGAAGAAGGAGGGAAGGAG
GGCGGGGGGGAGGGAGGGCACGGAGGGAGAAAGCGGCCGCTGGTTATTCC
TTCTGA
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protein sequence of rna7172

>rna7172-protein ID=rna7172-protein|Name=rna7172|organism=Nannochloropsis gaditana|type=polypeptide|length=169bp
MRPHPLLLPFLLLISSFVVSHAFLPPPLLPSSPITPSTVTALSPGKPNLG
KGGAVLQKPQLQTATRVGPPKNKEKTEERFETKEEESEKFAVVLVGDKDY
DQGHVVKVLCKVIAGLGAMKAVAAFQEAQSKGKAIVLIADEESAETVAEL
ICRNKPPVIADVEPLRKGD
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mRNA from alignment at CM002470.1:621897..623076-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7172 ID=rna7172|Name=rna7172|organism=Nannochloropsis gaditana|type=mRNA|length=1180bp|location=Sequence derived from alignment at CM002470.1:621897..623076- (Nannochloropsis gaditana)
GTCACCTTTCACCACAGGCATGCGACCACATCCCCTCCTCCTTCCATTCC
TTCTTCTTATATCGTCATTCGTTGTCAGCCATGCTTTTTTGCCCCCACCT
CTCCTACCCTCGTCTCCGATAACCCCCTCCACTGTGACAGCCCTCTCTCC
CGGGAAGCCGAATTTAGGTAAAGTGACCGCTCTCCCCCTTCTTCCTTGAT
GATTTTGCAATCACCCTGCAACTGAGACCGTGCGCATTTGTCAGTGGGGA
AGGAACCCCAAAACTCTAATATTCTCTTCCCGAAGTTGAACTGAGCAATC
AATATACCCATGGCGGATCCCCTCCCTCCCTCCCTCTCTCCCTCCCTCTC
GACATCCCTCCCTCCCTCCCCCCCTCCCCACATCCGTCCTTATCTCCCTC
CCTCCCCCCCTCCCTCCCTCCCTCCAATCACTCCCTTCCCGACATGCTTT
GCCCAGGAAAAGGCGGCGCCGTGCTCCAAAAGCCCCAGCTACAAACCGCC
ACCCGCGTGGGCCCCCCCAAGAACAAGGAGAAGACCGAGGAGCGGTTCGA
GACGAAGGAGGAGGAGAGCGAGAAGTTCGCGGTGGTCTTGGTCGGTGACA
AAGACTACGACCAGGGGCATGTCGTCAAGGTGAGAGGAAGGGACGAAGGG
AGGTGTCTTGCCCCTGCATGACCACCGTCCTCCTCTTGTCTGGCAGCATG
TTTGCTTTTTCCCCTCCCATCCTCCCTCCCCCCCTCCCTCCCGCCCTTCC
CCACCCTCCTCAACCCCTCTCTCCCCGCCTCCCTCCCTCCCTCTCCTCCA
GGTCCTGTGCAAGGTCATCGCGGGCCTGGGTGCGATGAAGGCCGTGGCAG
CTTTTCAAGAGGCGCAGAGCAAAGGGAAAGCCATCGTCCTCATCGCGGAC
GAGGAGAGCGCGGAGACGGTGGCGGAGCTCATCTGTCGCAACAAGCCCCC
CGTGATCGCTGACGTGGAGCCGTTGAGGAAGGGGGATTAAGGTGGAGGGA
GGGAGGGAGGGAGGGGGATGTGCAGTGGGGGGATGAGGTAGGAGGGAGGA
GGGGAGGAAGGAGGCGTGGCTGGGGACGGAGGAGGGAGGGAGGGAGGGAG
GGAGGAGGGAGAAAAGAGGCAAGGAGCATGCTGCCGATGAGGAGGAAGAG
AATGGGGTGATTTAAAAGATTTAATCTGGA
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Coding sequence (CDS) from alignment at CM002470.1:621897..623076-

>rna7172 ID=rna7172|Name=rna7172|organism=Nannochloropsis gaditana|type=CDS|length=1530bp|location=Sequence derived from alignment at CM002470.1:621897..623076- (Nannochloropsis gaditana)
GTCCTGTGCAAGGTCATCGCGGGCCTGGGTGCGATGAAGGCCGTGGCAGC
TTTTCAAGAGGCGCAGAGCAAAGGGAAAGCCATCGTCCTCATCGCGGACG
AGGAGAGCGCGGAGACGGTGGCGGAGCTCATCTGTCGCAACAAGCCCCCC
GTGATCGCTGACGTGGAGCCGTTGAGGAAGGGGGATTAAGAAAAGGCGGC
GCCGTGCTCCAAAAGCCCCAGCTACAAACCGCCACCCGCGTGGGCCCCCC
CAAGAACAAGGAGAAGACCGAGGAGCGGTTCGAGACGAAGGAGGAGGAGA
GCGAGAAGTTCGCGGTGGTCTTGGTCGGTGACAAAGACTACGACCAGGGG
CATGTCGTCAAGATGCGACCACATCCCCTCCTCCTTCCATTCCTTCTTCT
TATATCGTCATTCGTTGTCAGCCATGCTTTTTTGCCCCCACCTCTCCTAC
CCTCGTCTCCGATAACCCCCTCCACTGTGACAGCCCTCTCTCCCGGGAAG
CCGAATTTAGGTCCTGTGCAAGGTCATCGCGGGCCTGGGTGCGATGAAGG
CCGTGGCAGCTTTTCAAGAGGCGCAGAGCAAAGGGAAAGCCATCGTCCTC
ATCGCGGACGAGGAGAGCGCGGAGACGGTGGCGGAGCTCATCTGTCGCAA
CAAGCCCCCCGTGATCGCTGACGTGGAGCCGTTGAGGAAGGGGGATTAAG
AAAAGGCGGCGCCGTGCTCCAAAAGCCCCAGCTACAAACCGCCACCCGCG
TGGGCCCCCCCAAGAACAAGGAGAAGACCGAGGAGCGGTTCGAGACGAAG
GAGGAGGAGAGCGAGAAGTTCGCGGTGGTCTTGGTCGGTGACAAAGACTA
CGACCAGGGGCATGTCGTCAAGATGCGACCACATCCCCTCCTCCTTCCAT
TCCTTCTTCTTATATCGTCATTCGTTGTCAGCCATGCTTTTTTGCCCCCA
CCTCTCCTACCCTCGTCTCCGATAACCCCCTCCACTGTGACAGCCCTCTC
TCCCGGGAAGCCGAATTTAGGTCCTGTGCAAGGTCATCGCGGGCCTGGGT
GCGATGAAGGCCGTGGCAGCTTTTCAAGAGGCGCAGAGCAAAGGGAAAGC
CATCGTCCTCATCGCGGACGAGGAGAGCGCGGAGACGGTGGCGGAGCTCA
TCTGTCGCAACAAGCCCCCCGTGATCGCTGACGTGGAGCCGTTGAGGAAG
GGGGATTAAGAAAAGGCGGCGCCGTGCTCCAAAAGCCCCAGCTACAAACC
GCCACCCGCGTGGGCCCCCCCAAGAACAAGGAGAAGACCGAGGAGCGGTT
CGAGACGAAGGAGGAGGAGAGCGAGAAGTTCGCGGTGGTCTTGGTCGGTG
ACAAAGACTACGACCAGGGGCATGTCGTCAAGATGCGACCACATCCCCTC
CTCCTTCCATTCCTTCTTCTTATATCGTCATTCGTTGTCAGCCATGCTTT
TTTGCCCCCACCTCTCCTACCCTCGTCTCCGATAACCCCCTCCACTGTGA
CAGCCCTCTCTCCCGGGAAGCCGAATTTAG
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Synonyms
Publications