EWM23517.1, cds7155 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23517.1 vs. NCBI_GenBank
Match: gi|553177285|ref|XP_005852451.1| (hypothetical protein NGA_0680900 [Nannochloropsis gaditana CCMP526] >gi|422296083|gb|EKU23382.1| hypothetical protein NGA_0680900 [Nannochloropsis gaditana CCMP526] >gi|585104603|gb|EWM23517.1| conserved unknown protein [Nannochloropsis gaditana]) HSP 1 Score: 337.035 bits (863), Expect = 5.433e-117 Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0
Query: 1 MRPHPLLLPFLLLISSFVVSHAFLPPPLLPSSPITPSTVTALSPGKPNLGKGGAVLQKPQLQTATRVGPPKNKEKTEERFETKEEESEKFAVVLVGDKDYDQGHVVKVLCKVIAGLGAMKAVAAFQEAQSKGKAIVLIADEESAETVAELICRNKPPVIADVEPLRKGD 169
MRPHPLLLPFLLLISSFVVSHAFLPPPLLPSSPITPSTVTALSPGKPNLGKGGAVLQKPQLQTATRVGPPKNKEKTEERFETKEEESEKFAVVLVGDKDYDQGHVVKVLCKVIAGLGAMKAVAAFQEAQSKGKAIVLIADEESAETVAELICRNKPPVIADVEPLRKGD
Sbjct: 1 MRPHPLLLPFLLLISSFVVSHAFLPPPLLPSSPITPSTVTALSPGKPNLGKGGAVLQKPQLQTATRVGPPKNKEKTEERFETKEEESEKFAVVLVGDKDYDQGHVVKVLCKVIAGLGAMKAVAAFQEAQSKGKAIVLIADEESAETVAELICRNKPPVIADVEPLRKGD 169
BLAST of EWM23517.1 vs. NCBI_GenBank
Match: gi|1210530649|dbj|GAX10600.1| (hypothetical protein FisN_14Lh097 [Fistulifera solaris]) HSP 1 Score: 59.3066 bits (142), Expect = 5.245e-8 Identity = 44/169 (26.04%), Postives = 84/169 (49.70%), Query Frame = 0
Query: 1 MRPHPLLLPFLLLISSFVVSHAFL---PPPLLPSSPITPSTVTALSPGKPNLGKGGAVLQKPQLQTATRVGPP-KNKEKTEERFETKEEESEK---FAVVLVGDKDYDQGHVVKVLCKVIAGLGAMKAVAAFQEAQSKGKAIVLIADEESAETVAELICRNKPPVIADV 162
M + + FL++ S + + +AFL PP L P+S T +P + K ++TA++ K K KT++ + ++++ + + V+L+ D+DYDQ HVV LC ++ + +A +++A + G+A+ E AE E + R+ P + D+
Sbjct: 1 MMSNTRFVLFLMMASVWHLGNAFLLVAPPSLSPTS-----TTRLFGMAQPE----TQIKTKTTVKTASKQKVEIKKKFKTDDPVQNRDDDFQDAPMYKVMLLRDEDYDQEHVVTRLCAILDDMDEDQAATVWKQAMAAGQAMCGKYPFERAELFKEQLLRSDPMIFCDL 160
BLAST of EWM23517.1 vs. NCBI_GenBank
Match: gi|545704002|ref|XP_005704325.1| (ATP-dependent Clp protease adaptor protein ClpS [Galdieria sulphuraria] >gi|452820767|gb|EME27805.1| ATP-dependent Clp protease adaptor protein ClpS [Galdieria sulphuraria]) HSP 1 Score: 59.3066 bits (142), Expect = 9.886e-8 Identity = 44/126 (34.92%), Postives = 68/126 (53.97%), Query Frame = 0
Query: 39 VTALSPGKPNLGKGGAVLQKPQLQTATRVGPPKNKEKTEE---------RFETKEEESEKFAVVLVGDKDYDQGHVVKVLCKVIAGLGAMKAVAAFQEAQSKGKAIVLIADEESAETVAELICRNK 155
V LSP + + K +QK T V PPK +E TE + +T++E + V+L+GD++YDQ VV+ L KVI + +A F EAQS G++I+ I ++E AE A+ + R +
Sbjct: 78 VMPLSPAR--IAKPKTTIQK---DTKKLVSPPKQEELTETGSGAARAKPKRKTQQEFVPMYKVILLGDEEYDQVAVVQALLKVIPKMEQAEARRIFHEAQSTGESIICIVEKEHAEFYAQQLKREE 198
BLAST of EWM23517.1 vs. NCBI_GenBank
Match: gi|473897710|gb|EMS49025.1| (ATP-dependent Clp protease adapter protein ClpS [Triticum urartu]) HSP 1 Score: 57.7658 bits (138), Expect = 2.235e-7 Identity = 43/120 (35.83%), Postives = 61/120 (50.83%), Query Frame = 0
Query: 28 LLPSSPITPSTVTALSPGKPNLGKGGAVLQKPQLQTATRVGPPKNKEKTEERFETKEEE--SEKFAVVLVGDKDYDQGHVVKVLCKVIAGLGAMKAVAAFQEAQSKGKAIVLIADEESAE 145
L ++ TP +TA +PGK GG VL +P A +V P + E F+ K+ S F VVL D + + +VV+VL KVI G+ AV QEA G A+V++ + AE
Sbjct: 35 FLQTNVATPIVITAAAPGK-----GGGVLDRP----AEKVSPGRQSE-----FDKKKSRKMSPPFRVVLHNDNENRREYVVQVLMKVIPGMTVDNAVNIMQEAHVNGMAVVIVCSQPEAE 140 The following BLAST results are available for this feature:
BLAST of EWM23517.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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