EWM23517.1, cds7155 (CDS) Nannochloropsis gaditana

Overview
NameEWM23517.1
Unique Namecds7155
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:622910..623057 -
Alignment locationCM002470.1:622448..622620 -
Alignment locationCM002470.1:622087..622275 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23517.1
Productconserved unknown protein
Orig transcript idgnl|cribi|Naga_101003g2.7577.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:622910..623057 -
CM002470.1supercontigCM002470.1:622448..622620 -
CM002470.1supercontigCM002470.1:622087..622275 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0030163protein catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR014719Ribosomal_L7/12_C/ClpS-like
IPR003769ClpS_core
Homology
BLAST of EWM23517.1 vs. NCBI_GenBank
Match: gi|553177285|ref|XP_005852451.1| (hypothetical protein NGA_0680900 [Nannochloropsis gaditana CCMP526] >gi|422296083|gb|EKU23382.1| hypothetical protein NGA_0680900 [Nannochloropsis gaditana CCMP526] >gi|585104603|gb|EWM23517.1| conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 337.035 bits (863), Expect = 5.433e-117
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0
Query:    1 MRPHPLLLPFLLLISSFVVSHAFLPPPLLPSSPITPSTVTALSPGKPNLGKGGAVLQKPQLQTATRVGPPKNKEKTEERFETKEEESEKFAVVLVGDKDYDQGHVVKVLCKVIAGLGAMKAVAAFQEAQSKGKAIVLIADEESAETVAELICRNKPPVIADVEPLRKGD 169
            MRPHPLLLPFLLLISSFVVSHAFLPPPLLPSSPITPSTVTALSPGKPNLGKGGAVLQKPQLQTATRVGPPKNKEKTEERFETKEEESEKFAVVLVGDKDYDQGHVVKVLCKVIAGLGAMKAVAAFQEAQSKGKAIVLIADEESAETVAELICRNKPPVIADVEPLRKGD
Sbjct:    1 MRPHPLLLPFLLLISSFVVSHAFLPPPLLPSSPITPSTVTALSPGKPNLGKGGAVLQKPQLQTATRVGPPKNKEKTEERFETKEEESEKFAVVLVGDKDYDQGHVVKVLCKVIAGLGAMKAVAAFQEAQSKGKAIVLIADEESAETVAELICRNKPPVIADVEPLRKGD 169          
BLAST of EWM23517.1 vs. NCBI_GenBank
Match: gi|1210530649|dbj|GAX10600.1| (hypothetical protein FisN_14Lh097 [Fistulifera solaris])

HSP 1 Score: 59.3066 bits (142), Expect = 5.245e-8
Identity = 44/169 (26.04%), Postives = 84/169 (49.70%), Query Frame = 0
Query:    1 MRPHPLLLPFLLLISSFVVSHAFL---PPPLLPSSPITPSTVTALSPGKPNLGKGGAVLQKPQLQTATRVGPP-KNKEKTEERFETKEEESEK---FAVVLVGDKDYDQGHVVKVLCKVIAGLGAMKAVAAFQEAQSKGKAIVLIADEESAETVAELICRNKPPVIADV 162
            M  +   + FL++ S + + +AFL   PP L P+S     T       +P       +  K  ++TA++     K K KT++  + ++++ +    + V+L+ D+DYDQ HVV  LC ++  +   +A   +++A + G+A+      E AE   E + R+ P +  D+
Sbjct:    1 MMSNTRFVLFLMMASVWHLGNAFLLVAPPSLSPTS-----TTRLFGMAQPE----TQIKTKTTVKTASKQKVEIKKKFKTDDPVQNRDDDFQDAPMYKVMLLRDEDYDQEHVVTRLCAILDDMDEDQAATVWKQAMAAGQAMCGKYPFERAELFKEQLLRSDPMIFCDL 160          
BLAST of EWM23517.1 vs. NCBI_GenBank
Match: gi|545704002|ref|XP_005704325.1| (ATP-dependent Clp protease adaptor protein ClpS [Galdieria sulphuraria] >gi|452820767|gb|EME27805.1| ATP-dependent Clp protease adaptor protein ClpS [Galdieria sulphuraria])

HSP 1 Score: 59.3066 bits (142), Expect = 9.886e-8
Identity = 44/126 (34.92%), Postives = 68/126 (53.97%), Query Frame = 0
Query:   39 VTALSPGKPNLGKGGAVLQKPQLQTATRVGPPKNKEKTEE---------RFETKEEESEKFAVVLVGDKDYDQGHVVKVLCKVIAGLGAMKAVAAFQEAQSKGKAIVLIADEESAETVAELICRNK 155
            V  LSP +  + K    +QK    T   V PPK +E TE          + +T++E    + V+L+GD++YDQ  VV+ L KVI  +   +A   F EAQS G++I+ I ++E AE  A+ + R +
Sbjct:   78 VMPLSPAR--IAKPKTTIQK---DTKKLVSPPKQEELTETGSGAARAKPKRKTQQEFVPMYKVILLGDEEYDQVAVVQALLKVIPKMEQAEARRIFHEAQSTGESIICIVEKEHAEFYAQQLKREE 198          
BLAST of EWM23517.1 vs. NCBI_GenBank
Match: gi|473897710|gb|EMS49025.1| (ATP-dependent Clp protease adapter protein ClpS [Triticum urartu])

HSP 1 Score: 57.7658 bits (138), Expect = 2.235e-7
Identity = 43/120 (35.83%), Postives = 61/120 (50.83%), Query Frame = 0
Query:   28 LLPSSPITPSTVTALSPGKPNLGKGGAVLQKPQLQTATRVGPPKNKEKTEERFETKEEE--SEKFAVVLVGDKDYDQGHVVKVLCKVIAGLGAMKAVAAFQEAQSKGKAIVLIADEESAE 145
             L ++  TP  +TA +PGK     GG VL +P    A +V P +  E     F+ K+    S  F VVL  D +  + +VV+VL KVI G+    AV   QEA   G A+V++  +  AE
Sbjct:   35 FLQTNVATPIVITAAAPGK-----GGGVLDRP----AEKVSPGRQSE-----FDKKKSRKMSPPFRVVLHNDNENRREYVVQVLMKVIPGMTVDNAVNIMQEAHVNGMAVVIVCSQPEAE 140          
The following BLAST results are available for this feature:
BLAST of EWM23517.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|553177285|ref|XP_005852451.1|5.433e-117100.00hypothetical protein NGA_0680900 [Nannochloropsis ... [more]
gi|1210530649|dbj|GAX10600.1|5.245e-826.04hypothetical protein FisN_14Lh097 [Fistulifera sol... [more]
gi|545704002|ref|XP_005704325.1|9.886e-834.92ATP-dependent Clp protease adaptor protein ClpS [G... [more]
gi|473897710|gb|EMS49025.1|2.235e-735.83ATP-dependent Clp protease adapter protein ClpS [T... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7172rna7172Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications