rna7170, rna7170 (mRNA) Nannochloropsis gaditana

Overview
Namerna7170
Unique Namerna7170
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1524
Alignment locationCM002470.1:611344..612174 -

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Properties
Property NameValue
Productpermease (major facilitator superfamily)
Orig transcript idgnl|cribi|Naga_100754g1.10357.mrna
Orig protein idgnl|cribi|Naga_100754g1.10357
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:611344..612174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100754g1gene6932Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23520.1cds7153Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7170rna7170-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7170 ID=rna7170|Name=rna7170|organism=Nannochloropsis gaditana|type=mRNA|length=1524bp
CTCTCCTCCTCCTCCTCCTCCTTAGCCTGGCCTGCGTCTTCCACCCTCCT
CCCTCCCTCCCTCCTCCAGTACTTGCATGCAATCCTGGCGTCCAAGAGGG
AGAGGCCCGAGGTCGAGGGCGAGGGAGGGAGGGAGGGGAAGGATGGATTC
GAGGGGCAGGGAGAGGGCGAGGACGGGGGGGAGGAAGGGTTAGAGGGCAG
GATGCAAGCCCTCCCTCTGCCCGGGGCCCGCCATGGCCTCTCCCATCCTT
ATCAGGCGGTGAACGAGCAGCAGGACGATAGAGGCCTCCAGACCCGCGAG
GGTTATCCCTCCCACGCCTGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCGCCCTCCCTCTCGACCTCCTCCTTGTCACACTTGAGCCACCGCCTCC
TTCCCCGCCGTCTTTCTGGAGGCGGAGATGAGGGTGGGAAGGAGGACGGG
GGGGAGGGCGGGAGGGAGGGCGGGAGGGAGGGGCACTCCACCGCCGGCAC
AACGTCCTCGCTGTCGCAGTACAACCCGTTGCCCTACCTCCTTCCCTCCC
TTTCCCGTCATGGCACTCTCCACTCAAGCGGCGCCTCCACCAGCTCTTCC
TCTCAGGCCCCAAACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTT
CTCCCCCCATCCCCGCACCTTCGTGGAGCTCTCGCCTCTTTCCTACCTTC
CGGGGAGCTTTGTCAAGAAACATCTGGGCATGGTCTCACTCCATTTCGTG
AAAGAAAGCAGTTTGACGGCCGTGGCGGTCGGGAGCGGGGGAGGGAGCGG
GGGAGGGCGGGAGGGAGGGAGGGGAGGGAGGGGTGTGACGCTGGGAACCT
TGTTGCAGGTGTTTCTGGTGGAAGTGAACGCCATGGTTAGGGCCCACGTT
GCGGGTCTGGGGGGCAATGCTCTCTTGTCCTATCGATTGGTCACTCAAGA
AAGGGGAGGGAGGGTCTACCGAAGCACCACGTACCACATGGTTAGCGTGA
GTGGCGATGCGGTCAGGGTGGAGGCGAATGCCAGGGAAGGAGGGGGGGAG
GAGGACGGAGGGAAGGAGGGGAAGGAGAAGAAGGAAGGACCAAGAAGAGG
AAGAGGTGAAGGGGGGACAGCGGAGCACCCACATCGCGTACCGTCACAAC
CGAGGCACAACCGGCAAAGGGGGCGGGAGTCCGTTTCAGTCCTGGAGGGA
GGGCGGGAGAAAGGAGGCAGCGTGGGCAGTGCACCGACCGAGTTCCCGCA
GGCCCGTGCGCCGGAGGGTGAGGGCCGGGAGGGAAGAGGGGTGACAGGCA
TAACGCGGAGCCTTTCCACCACGTGAAATAGGATTGGCCGCGCGCGGTCA
CCGCGGTAGCTAGGGGGATAGCGAGTCGCTCTGGCGCCTGTTCGAGGCTG
TGGGAGCGACCACTTTGCGGGGTCTCCCACTGCTTTGGTACGTGTCGTGG
TTGCAAAGGAGCTGTACCGGGGGCGAAGGACCAAGGACGCAGGGCCTGTA
AAATGAAAAGCAAATCTTGGGAGG
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protein sequence of rna7170

>rna7170-protein ID=rna7170-protein|Name=rna7170|organism=Nannochloropsis gaditana|type=polypeptide|length=207bp
MSNLSNADTPSASSSARSPPAAFHVLVLTMAAVANFLVFALVSILGPFYP
PYATSSPSLHASSFMVGLIFAAYPLAQILTAPVAGSLSARYGRLPTCVGG
LFLLTGSTVLFALGTRVSLHVLARFLQGSAGACVNVSAFALVLEVSQALP
RDLGVQEVVVGAGCMVGPTLGGFLFESLGFQAMFLALSLLPLSIGTVTLV
ALGPLGV
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mRNA from alignment at CM002470.1:611344..612174-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7170 ID=rna7170|Name=rna7170|organism=Nannochloropsis gaditana|type=mRNA|length=831bp|location=Sequence derived from alignment at CM002470.1:611344..612174- (Nannochloropsis gaditana)
TGTTGTCCCGGCCTCAGGGCTTTCCATTGAAGCCTCGACCTACCATTCGA
TCCCGTACTGAATCGTCCACACCTCTTTCACAATGACAGGTCGACGTCCC
AATGCTGTTGGCACATTTATGTTGACGTTCCGAAGGTGCCCACTGACTCT
TCTTCGCTTCGCTCACGCCCTGATTACTCCTTCCCCAGTTTCCTCTCAAG
CCGACCCCCGATGTCAAATTTGTCCAACGCCGACACACCCAGTGCCAGCA
GCTCAGCCCGCTCTCCACCCGCAGCCTTCCATGTCCTCGTCTTGACCATG
GCTGCTGTCGCCAACTTTCTGGTTTTTGCCCTTGTCTCTATATTGGGGCC
CTTCTACCCACCCTACGCTACCTCCTCCCCCTCCCTCCATGCCTCCTCCT
TCATGGTCGGCCTCATTTTCGCCGCATATCCCCTCGCACAAATCCTCACG
GCGCCCGTGGCAGGCTCCCTCTCGGCCCGCTACGGTCGACTGCCCACCTG
TGTAGGAGGCCTTTTCCTCCTCACGGGCAGCACCGTCCTTTTCGCCCTCG
GCACGCGCGTCTCCCTCCACGTCCTCGCCCGCTTCCTCCAAGGCTCCGCG
GGGGCCTGCGTGAACGTATCCGCGTTTGCCCTGGTCTTGGAGGTGTCTCA
GGCTCTGCCCCGGGACCTGGGTGTTCAGGAGGTGGTGGTGGGGGCCGGGT
GCATGGTCGGGCCGACCTTGGGCGGTTTTCTTTTCGAATCCCTCGGCTTC
CAAGCCATGTTCCTCGCCTTGTCGTTGCTGCCCTTGAGCATAGGCACGGT
GACCCTGGTGGCGCTGGGGCCTCTGGGGGTG
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Coding sequence (CDS) from alignment at CM002470.1:611344..612174-

>rna7170 ID=rna7170|Name=rna7170|organism=Nannochloropsis gaditana|type=CDS|length=621bp|location=Sequence derived from alignment at CM002470.1:611344..612174- (Nannochloropsis gaditana)
ATGTCAAATTTGTCCAACGCCGACACACCCAGTGCCAGCAGCTCAGCCCG
CTCTCCACCCGCAGCCTTCCATGTCCTCGTCTTGACCATGGCTGCTGTCG
CCAACTTTCTGGTTTTTGCCCTTGTCTCTATATTGGGGCCCTTCTACCCA
CCCTACGCTACCTCCTCCCCCTCCCTCCATGCCTCCTCCTTCATGGTCGG
CCTCATTTTCGCCGCATATCCCCTCGCACAAATCCTCACGGCGCCCGTGG
CAGGCTCCCTCTCGGCCCGCTACGGTCGACTGCCCACCTGTGTAGGAGGC
CTTTTCCTCCTCACGGGCAGCACCGTCCTTTTCGCCCTCGGCACGCGCGT
CTCCCTCCACGTCCTCGCCCGCTTCCTCCAAGGCTCCGCGGGGGCCTGCG
TGAACGTATCCGCGTTTGCCCTGGTCTTGGAGGTGTCTCAGGCTCTGCCC
CGGGACCTGGGTGTTCAGGAGGTGGTGGTGGGGGCCGGGTGCATGGTCGG
GCCGACCTTGGGCGGTTTTCTTTTCGAATCCCTCGGCTTCCAAGCCATGT
TCCTCGCCTTGTCGTTGCTGCCCTTGAGCATAGGCACGGTGACCCTGGTG
GCGCTGGGGCCTCTGGGGGTG
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Synonyms
Publications