EWM23520.1, cds7153 (CDS) Nannochloropsis gaditana

Overview
NameEWM23520.1
Unique Namecds7153
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:611344..611964 -

Link to JBrowse

Properties
Property NameValue
Start range611344
Start range.
Protein idEWM23520.1
Productpermease (major facilitator superfamily)
Partialtrue
Orig transcript idgnl|cribi|Naga_100754g1.10357.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:611344..611964 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
IPR011701MFS
IPR001958Tet-R_TetA/multi-R_MdtG
Homology
BLAST of EWM23520.1 vs. NCBI_GenBank
Match: gi|585104612|gb|EWM23520.1| (permease (major facilitator superfamily), partial [Nannochloropsis gaditana])

HSP 1 Score: 394.43 bits (1012), Expect = 1.913e-138
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0
Query:    1 MSNLSNADTPSASSSARSPPAAFHVLVLTMAAVANFLVFALVSILGPFYPPYATSSPSLHASSFMVGLIFAAYPLAQILTAPVAGSLSARYGRLPTCVGGLFLLTGSTVLFALGTRVSLHVLARFLQGSAGACVNVSAFALVLEVSQALPRDLGVQEVVVGAGCMVGPTLGGFLFESLGFQAMFLALSLLPLSIGTVTLVALGPLGV 207
            MSNLSNADTPSASSSARSPPAAFHVLVLTMAAVANFLVFALVSILGPFYPPYATSSPSLHASSFMVGLIFAAYPLAQILTAPVAGSLSARYGRLPTCVGGLFLLTGSTVLFALGTRVSLHVLARFLQGSAGACVNVSAFALVLEVSQALPRDLGVQEVVVGAGCMVGPTLGGFLFESLGFQAMFLALSLLPLSIGTVTLVALGPLGV
Sbjct:    1 MSNLSNADTPSASSSARSPPAAFHVLVLTMAAVANFLVFALVSILGPFYPPYATSSPSLHASSFMVGLIFAAYPLAQILTAPVAGSLSARYGRLPTCVGGLFLLTGSTVLFALGTRVSLHVLARFLQGSAGACVNVSAFALVLEVSQALPRDLGVQEVVVGAGCMVGPTLGGFLFESLGFQAMFLALSLLPLSIGTVTLVALGPLGV 207          
BLAST of EWM23520.1 vs. NCBI_GenBank
Match: gi|553183476|ref|XP_005853905.1| (permease (major facilitator superfamily) [Nannochloropsis gaditana CCMP526] >gi|422295160|gb|EKU22459.1| permease (major facilitator superfamily) [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 110.538 bits (275), Expect = 1.663e-24
Identity = 66/188 (35.11%), Postives = 108/188 (57.45%), Query Frame = 0
Query:    6 NADTPSASSSARSPPAAFHVLVLTMAAVANFLVFALVSILGPFYPPYATSSPSLHASSFMVGLIFAAYPLAQILTAPVAGSLSARYGRLPTCVGGLFLLTGSTVLFALGTRVSLHVLARFLQGSAGACVNVSAFALVLEVSQALPRDLGVQEVVVGAGCMVGPTLGGFLFESLGFQAMFLALSLLPLS 193
             A+  + +++A+   +     VL M  V   +V  L + + PF+P +A     L+A S +VG+IF+ YPL+  LT+ V G  SAR+GR      GL LL G TV F     ++  ++ R +QG  G C+NV+  AL+L+VS  + RD+G+ +  +G G ++GP LG  L+  +GF+ + L L  +P++
Sbjct:   66 EANAQAEANTAKRRQSRTRNTVLAMVIVTELIVQILSAAMVPFFPDHAKRY--LNADSTIVGVIFSLYPLSLFLTSLVIGMASARFGRAFVYTSGLILLGGGTVGFGFCNDLTSIMIMRVVQGIGGGCINVAGMALLLQVSINIERDVGLDQAAIGLGYILGPPLGAILYAYMGFRDLNLVLGAIPIA 251          
BLAST of EWM23520.1 vs. NCBI_GenBank
Match: gi|944559562|gb|KQM12132.1| (hypothetical protein AOA80_04140 [Methanomassiliicoccales archaeon RumEn M1])

HSP 1 Score: 95.5153 bits (236), Expect = 1.712e-19
Identity = 76/199 (38.19%), Postives = 105/199 (52.76%), Query Frame = 0
Query:   10 PSASSSARS-PPAAFHVLVLTMAAVANFLVFALVSILGPFYPPYATSSPSLHASSFMVGLIFAAYPLAQILTAPVAGSLSARYGRLPTCVGGLFLLTGSTVLFALGTRVSLHVLARFLQGSAGACVNVSAFALVLEVSQALPRD-----LGVQEVVVGAGCMVGPTLGGFLFESLGFQAMFLALSLLPLSIGTVTLVAL 202
            PS     RS   A F + V++M    + LV+ +++   P  P YA     + AS   +GLIF+AYP+ Q+LT    G+LS RYGR P  + GL  L  STV FA+   V   +L R LQG A +C   +  AL   +S+  P D     LG+     GAG M GP  GG L E  G+   FL  + L L+I ++T++AL
Sbjct:    3 PSGRPGGRSFDLATFLLAVVSMVLFVDALVYGMIA---PVVPSYAHV---MGASDLEIGLIFSAYPIVQLLTLMPVGALSDRYGRKPFILLGLVTLVISTVAFAISVNVPQLILTRGLQGLAASCTMTAGLAL---ISEGAPPDKMGGTLGIATASQGAGIMAGPLFGGSLAEVGGYNFPFLVAAALTLAILSLTVIAL 192          
BLAST of EWM23520.1 vs. NCBI_GenBank
Match: gi|585099635|gb|EWM20208.1| (major facilitator superfamily mfs_1 [Nannochloropsis gaditana])

HSP 1 Score: 92.0485 bits (227), Expect = 4.997e-19
Identity = 54/144 (37.50%), Postives = 82/144 (56.94%), Query Frame = 0
Query:   41 LVSILGPFYPPYATSSPSLHASSFMVGLIFAAYPLAQILTAPVAGSLSARYGRLPTCVGGLFLLTGSTVLFALGTRVSLHVLARFLQGSAGACVNVSAFALVLEVSQALPRDLGVQEVVVGAGCMVGPTLGGFLFESLGFQAMF 184
            ++S LGP++P Y        ASS ++GLIF+   + Q LT P+ G LS  + RL T + GL +L    +LF +   +   ++ R LQG     + VS  +L++  S  L RD+G+ E   G G ++GP +GGFL   LGF+A+F
Sbjct:  111 IISCLGPYFPLYVKRK--FGASSTLLGLIFSITSIVQFLTCPLVGPLSRAFSRLVTLIIGLVVLAAGALLFGMLDSIPGFIIGRLLQGIGNGFLEVSGLSLLMRFSTDLRRDIGLLEGASGVGSLLGPLIGGFLSARLGFRALF 252          
BLAST of EWM23520.1 vs. NCBI_GenBank
Match: gi|551678537|ref|XP_005842021.1| (hypothetical protein GUITHDRAFT_99681 [Guillardia theta CCMP2712] >gi|428186190|gb|EKX55041.1| hypothetical protein GUITHDRAFT_99681 [Guillardia theta CCMP2712])

HSP 1 Score: 93.5893 bits (231), Expect = 1.151e-18
Identity = 58/156 (37.18%), Postives = 84/156 (53.85%), Query Frame = 0
Query:   26 LVLTMAAVANFLVFALVSILGPFYPPYATSSPSLHASSFMVGLIFAAYPLAQILTAPVAGSLSARYGRLPTCVGGLFLLTGSTVLFALGTRVSLHVLARFLQGSAGACVNVSAFALVLEVSQALPRDLGVQEVVVGAGCMVGPTLGGFLFESLGFQ 181
             V  +A VA       VS++ PF+P YA  +  L A   ++GLI A  P AQ+++ P+   LS +  R      GL +L   T++FA   +V+  ++AR LQG      N +A ALV+E      RDLG+ E +VG G M+GP +GG  +   GFQ
Sbjct:   45 FVRNLALVATLSTMMTVSLIAPFFPGYAKEN--LDAPETVIGLIVACNPFAQVMSTPLWSFLSTKISRSDRLSLGLSILAIGTIMFAYSNQVTTFMIARALQGIGSQGSNSAALALVIE------RDLGLIEFIVGVGYMIGPAVGGISYRYFGFQ 192          
BLAST of EWM23520.1 vs. NCBI_GenBank
Match: gi|553177040|ref|XP_005852431.1| (major facilitator superfamily mfs 1, partial [Nannochloropsis gaditana CCMP526] >gi|422296102|gb|EKU23401.1| major facilitator superfamily mfs 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 91.2781 bits (225), Expect = 5.306e-18
Identity = 54/144 (37.50%), Postives = 82/144 (56.94%), Query Frame = 0
Query:   41 LVSILGPFYPPYATSSPSLHASSFMVGLIFAAYPLAQILTAPVAGSLSARYGRLPTCVGGLFLLTGSTVLFALGTRVSLHVLARFLQGSAGACVNVSAFALVLEVSQALPRDLGVQEVVVGAGCMVGPTLGGFLFESLGFQAMF 184
            ++S LGP++P Y        ASS ++GLIF+   + Q LT P+ G LS  + RL T + GL +L    +LF +   +   ++ R LQG     + VS  +L++  S  L RD+G+ E   G G ++GP +GGFL   LGF+A+F
Sbjct:  111 IISCLGPYFPLYVKRK--FGASSTLLGLIFSITSIVQFLTCPLVGPLSRAFSRLVTLMIGLVVLAAGALLFGMLDSIPGFIIGRLLQGIGNGFLEVSGLSLLMRFSTDLRRDIGLLEGASGVGSLLGPLIGGFLSARLGFRALF 252          
BLAST of EWM23520.1 vs. NCBI_GenBank
Match: gi|500971531|ref|WP_012035226.1| (MFS transporter [Methanocella arvoryzae] >gi|110622077|emb|CAJ37355.1| putative permease (major facilitator superfamily) [Methanocella arvoryzae MRE50])

HSP 1 Score: 83.5741 bits (205), Expect = 2.053e-15
Identity = 56/172 (32.56%), Postives = 98/172 (56.98%), Query Frame = 0
Query:   26 LVLTMAAVANFLVFALVSILGPFYPPYATSSPSLHASSFMVGLIFAAYPLAQILTAPVAGSLSARYGRLPTCVGGLFLLTGSTVLFALGTRVSLHVLARFLQGSAGACVNVSAFALVLEVSQALPR--DLGVQEVVVGAGCMVGPTLGGFLFESLGFQAMFLALSLLPLSIG 195
            L++  A + + +++ LV    P  P YAT+   L A   M+G+IF A+ +A +L +   G+LS R GR P  V G+FLL  + ++F +   + L ++AR +QG +GA    +  AL+ +   A  R   LG+   ++ AG + GP +GG +++ LG++  F+  S+L + +G
Sbjct:   11 LLVAAALLIDMMMYTLVI---PILPAYATT---LGADEMMIGVIFGAFSIALLLFSIPFGALSDRVGRRPLLVAGMFLLALTNLVFVISDNLYLLIVARVIQGISGAATWSAGLALIADTFDASERGSKLGMAMAIMSAGTLSGPVVGGIVYDLLGYRMTFVLPSVLTILLG 176          
BLAST of EWM23520.1 vs. NCBI_GenBank
Match: gi|518008037|ref|WP_019178245.1| (MFS transporter [Methanomassiliicoccus luminyensis])

HSP 1 Score: 83.5741 bits (205), Expect = 2.315e-15
Identity = 65/179 (36.31%), Postives = 91/179 (50.84%), Query Frame = 0
Query:   26 LVLTMAAVANFLVFALVSILGPFYPPYATSSPSLHASSFMVGLIFAAYPLAQILTAPVAGSLSARYGRLPTCVGGLFLLTGSTVLFALGTRVSLHVLARFLQGSAGACVNVSAFALVLE--VSQALPRDLGVQEVVVGAGCMVGPTLGGFLFESLGFQAMFLALSLLPLSIGTVTLVAL 202
            L++ + AVA F+      ++ P  P YA S   L AS   VG+IFA YP AQ+++    G LS RYGR    V GL  +  ST+ FA+ T     VL R LQG A +C   +  ALV E   S ++   LG+     G G + GP +GG L E  G+   FL  + + +++      AL
Sbjct:   12 LIIAVVAVALFMEAVTYGLIVPVVPSYAYS---LGASDLEVGIIFATYPAAQMVSMMPIGILSDRYGRSRFIVLGLVAMAASTLAFAMSTEKWELVLTRGLQGLASSCTMTAGLALVSEKAASGSMGGSLGIVTATQGGGYVAGPVMGGLLMEWGGYALPFLVTTTVVIAVAVFAYFAL 187          
BLAST of EWM23520.1 vs. NCBI_GenBank
Match: gi|196010525|ref|XP_002115127.1| (hypothetical protein TRIADDRAFT_58958 [Trichoplax adhaerens] >gi|190582510|gb|EDV22583.1| hypothetical protein TRIADDRAFT_58958 [Trichoplax adhaerens])

HSP 1 Score: 82.0333 bits (201), Expect = 9.370e-15
Identity = 64/208 (30.77%), Postives = 98/208 (47.12%), Query Frame = 0
Query:    3 NLSNADTPSASSSARSPPAAFHVLVLTMAAVANFLVFALVSILGPFYPPYATSSPSLHASSFMVGLIFAAYPLAQILTAPVAGSLSARYGRLPTCVGGLFLLTGSTVLFAL-------GTRVSLHVLARFLQGSAGACVNVSAFALVLEVSQALPRDLGVQ----EVVVGAGCMVGPTLGGFLFESLGFQAMFLALSLLPLSIGTVTL 199
            N  N D  + +    S      ++VL   +V  FL+ ++ ++L PF+P  A +    H   F +GLIFA YP    L +P+ G +  R G + T   GLF   G ++LF          T V+  +L R +QG   AC   +A A+   +S   P ++       E+    G M GP +GG LF++ GF+  F+ L    L IG V +
Sbjct:   17 NSENGDETTTTPEVTSKRNKLIIMVLL--SVTYFLLASVYALLAPFFPQEAKNRNVKH---FEIGLIFAIYPFFIFLISPICGIMMPRIGVVFTLWAGLFFEAGCSILFGFLPNILDHQTFVAFCLLIRGMQGIGAACSQTAALAM---MSSIFPDNVATTTSTLEIFGALGFMTGPPIGGLLFQAGGFKLPFIVLGSTLLVIGCVVI 216          
BLAST of EWM23520.1 vs. NCBI_GenBank
Match: gi|1153874372|ref|WP_078394738.1| (MFS transporter [Bacillus patagoniensis])

HSP 1 Score: 81.6481 bits (200), Expect = 9.478e-15
Identity = 57/156 (36.54%), Postives = 88/156 (56.41%), Query Frame = 0
Query:   27 VLTMAAVANFLVFALVSILGPFYPPYATSSPSLHASSFMVGLIFAAYPLAQILTAPVAGSLSARYGRLPTCVGGLFLLTGSTVLFALGTRVSLHVLARFLQGSAGACVNVSAFALVLEV--SQALPRDLGVQEVVVGAGCMVGPTLGGFLFESLGF 180
            V+ +A  A+ L++ LV    PF P YA S   L AS   +GL+FA+Y +A  ++ P+ G+L+ R GR    V GL  L  +T+++AL T   + VLAR LQG A A    +  AL+ EV   +   + +G+       G ++GP +GG+L+E  G+
Sbjct:   13 VVILAIFADMLMYGLVV---PFLPIYAES---LGASQSEIGLLFASYAIALFISTPIFGALADRVGRKKLLVIGLIALAITTIIYALSTSFWILVLARLLQGFAAAIPWTAGLALLAEVFTKEERGKAMGIAMSGQAGGVLLGPPIGGWLYEFGGY 162          
The following BLAST results are available for this feature:
BLAST of EWM23520.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104612|gb|EWM23520.1|1.913e-138100.00permease (major facilitator superfamily), partial ... [more]
gi|553183476|ref|XP_005853905.1|1.663e-2435.11permease (major facilitator superfamily) [Nannochl... [more]
gi|944559562|gb|KQM12132.1|1.712e-1938.19hypothetical protein AOA80_04140 [Methanomassiliic... [more]
gi|585099635|gb|EWM20208.1|4.997e-1937.50major facilitator superfamily mfs_1 [Nannochlorops... [more]
gi|551678537|ref|XP_005842021.1|1.151e-1837.18hypothetical protein GUITHDRAFT_99681 [Guillardia ... [more]
gi|553177040|ref|XP_005852431.1|5.306e-1837.50major facilitator superfamily mfs 1, partial [Nann... [more]
gi|500971531|ref|WP_012035226.1|2.053e-1532.56MFS transporter [Methanocella arvoryzae] >gi|11062... [more]
gi|518008037|ref|WP_019178245.1|2.315e-1536.31MFS transporter [Methanomassiliicoccus luminyensis... [more]
gi|196010525|ref|XP_002115127.1|9.370e-1530.77hypothetical protein TRIADDRAFT_58958 [Trichoplax ... [more]
gi|1153874372|ref|WP_078394738.1|9.478e-1536.54MFS transporter [Bacillus patagoniensis][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7170rna7170Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications