EWM23520.1, cds7153 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23520.1 vs. NCBI_GenBank
Match: gi|585104612|gb|EWM23520.1| (permease (major facilitator superfamily), partial [Nannochloropsis gaditana]) HSP 1 Score: 394.43 bits (1012), Expect = 1.913e-138 Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0
Query: 1 MSNLSNADTPSASSSARSPPAAFHVLVLTMAAVANFLVFALVSILGPFYPPYATSSPSLHASSFMVGLIFAAYPLAQILTAPVAGSLSARYGRLPTCVGGLFLLTGSTVLFALGTRVSLHVLARFLQGSAGACVNVSAFALVLEVSQALPRDLGVQEVVVGAGCMVGPTLGGFLFESLGFQAMFLALSLLPLSIGTVTLVALGPLGV 207
MSNLSNADTPSASSSARSPPAAFHVLVLTMAAVANFLVFALVSILGPFYPPYATSSPSLHASSFMVGLIFAAYPLAQILTAPVAGSLSARYGRLPTCVGGLFLLTGSTVLFALGTRVSLHVLARFLQGSAGACVNVSAFALVLEVSQALPRDLGVQEVVVGAGCMVGPTLGGFLFESLGFQAMFLALSLLPLSIGTVTLVALGPLGV
Sbjct: 1 MSNLSNADTPSASSSARSPPAAFHVLVLTMAAVANFLVFALVSILGPFYPPYATSSPSLHASSFMVGLIFAAYPLAQILTAPVAGSLSARYGRLPTCVGGLFLLTGSTVLFALGTRVSLHVLARFLQGSAGACVNVSAFALVLEVSQALPRDLGVQEVVVGAGCMVGPTLGGFLFESLGFQAMFLALSLLPLSIGTVTLVALGPLGV 207
BLAST of EWM23520.1 vs. NCBI_GenBank
Match: gi|553183476|ref|XP_005853905.1| (permease (major facilitator superfamily) [Nannochloropsis gaditana CCMP526] >gi|422295160|gb|EKU22459.1| permease (major facilitator superfamily) [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 110.538 bits (275), Expect = 1.663e-24 Identity = 66/188 (35.11%), Postives = 108/188 (57.45%), Query Frame = 0
Query: 6 NADTPSASSSARSPPAAFHVLVLTMAAVANFLVFALVSILGPFYPPYATSSPSLHASSFMVGLIFAAYPLAQILTAPVAGSLSARYGRLPTCVGGLFLLTGSTVLFALGTRVSLHVLARFLQGSAGACVNVSAFALVLEVSQALPRDLGVQEVVVGAGCMVGPTLGGFLFESLGFQAMFLALSLLPLS 193
A+ + +++A+ + VL M V +V L + + PF+P +A L+A S +VG+IF+ YPL+ LT+ V G SAR+GR GL LL G TV F ++ ++ R +QG G C+NV+ AL+L+VS + RD+G+ + +G G ++GP LG L+ +GF+ + L L +P++
Sbjct: 66 EANAQAEANTAKRRQSRTRNTVLAMVIVTELIVQILSAAMVPFFPDHAKRY--LNADSTIVGVIFSLYPLSLFLTSLVIGMASARFGRAFVYTSGLILLGGGTVGFGFCNDLTSIMIMRVVQGIGGGCINVAGMALLLQVSINIERDVGLDQAAIGLGYILGPPLGAILYAYMGFRDLNLVLGAIPIA 251
BLAST of EWM23520.1 vs. NCBI_GenBank
Match: gi|944559562|gb|KQM12132.1| (hypothetical protein AOA80_04140 [Methanomassiliicoccales archaeon RumEn M1]) HSP 1 Score: 95.5153 bits (236), Expect = 1.712e-19 Identity = 76/199 (38.19%), Postives = 105/199 (52.76%), Query Frame = 0
Query: 10 PSASSSARS-PPAAFHVLVLTMAAVANFLVFALVSILGPFYPPYATSSPSLHASSFMVGLIFAAYPLAQILTAPVAGSLSARYGRLPTCVGGLFLLTGSTVLFALGTRVSLHVLARFLQGSAGACVNVSAFALVLEVSQALPRD-----LGVQEVVVGAGCMVGPTLGGFLFESLGFQAMFLALSLLPLSIGTVTLVAL 202
PS RS A F + V++M + LV+ +++ P P YA + AS +GLIF+AYP+ Q+LT G+LS RYGR P + GL L STV FA+ V +L R LQG A +C + AL +S+ P D LG+ GAG M GP GG L E G+ FL + L L+I ++T++AL
Sbjct: 3 PSGRPGGRSFDLATFLLAVVSMVLFVDALVYGMIA---PVVPSYAHV---MGASDLEIGLIFSAYPIVQLLTLMPVGALSDRYGRKPFILLGLVTLVISTVAFAISVNVPQLILTRGLQGLAASCTMTAGLAL---ISEGAPPDKMGGTLGIATASQGAGIMAGPLFGGSLAEVGGYNFPFLVAAALTLAILSLTVIAL 192
BLAST of EWM23520.1 vs. NCBI_GenBank
Match: gi|585099635|gb|EWM20208.1| (major facilitator superfamily mfs_1 [Nannochloropsis gaditana]) HSP 1 Score: 92.0485 bits (227), Expect = 4.997e-19 Identity = 54/144 (37.50%), Postives = 82/144 (56.94%), Query Frame = 0
Query: 41 LVSILGPFYPPYATSSPSLHASSFMVGLIFAAYPLAQILTAPVAGSLSARYGRLPTCVGGLFLLTGSTVLFALGTRVSLHVLARFLQGSAGACVNVSAFALVLEVSQALPRDLGVQEVVVGAGCMVGPTLGGFLFESLGFQAMF 184
++S LGP++P Y ASS ++GLIF+ + Q LT P+ G LS + RL T + GL +L +LF + + ++ R LQG + VS +L++ S L RD+G+ E G G ++GP +GGFL LGF+A+F
Sbjct: 111 IISCLGPYFPLYVKRK--FGASSTLLGLIFSITSIVQFLTCPLVGPLSRAFSRLVTLIIGLVVLAAGALLFGMLDSIPGFIIGRLLQGIGNGFLEVSGLSLLMRFSTDLRRDIGLLEGASGVGSLLGPLIGGFLSARLGFRALF 252
BLAST of EWM23520.1 vs. NCBI_GenBank
Match: gi|551678537|ref|XP_005842021.1| (hypothetical protein GUITHDRAFT_99681 [Guillardia theta CCMP2712] >gi|428186190|gb|EKX55041.1| hypothetical protein GUITHDRAFT_99681 [Guillardia theta CCMP2712]) HSP 1 Score: 93.5893 bits (231), Expect = 1.151e-18 Identity = 58/156 (37.18%), Postives = 84/156 (53.85%), Query Frame = 0
Query: 26 LVLTMAAVANFLVFALVSILGPFYPPYATSSPSLHASSFMVGLIFAAYPLAQILTAPVAGSLSARYGRLPTCVGGLFLLTGSTVLFALGTRVSLHVLARFLQGSAGACVNVSAFALVLEVSQALPRDLGVQEVVVGAGCMVGPTLGGFLFESLGFQ 181
V +A VA VS++ PF+P YA + L A ++GLI A P AQ+++ P+ LS + R GL +L T++FA +V+ ++AR LQG N +A ALV+E RDLG+ E +VG G M+GP +GG + GFQ
Sbjct: 45 FVRNLALVATLSTMMTVSLIAPFFPGYAKEN--LDAPETVIGLIVACNPFAQVMSTPLWSFLSTKISRSDRLSLGLSILAIGTIMFAYSNQVTTFMIARALQGIGSQGSNSAALALVIE------RDLGLIEFIVGVGYMIGPAVGGISYRYFGFQ 192
BLAST of EWM23520.1 vs. NCBI_GenBank
Match: gi|553177040|ref|XP_005852431.1| (major facilitator superfamily mfs 1, partial [Nannochloropsis gaditana CCMP526] >gi|422296102|gb|EKU23401.1| major facilitator superfamily mfs 1, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 91.2781 bits (225), Expect = 5.306e-18 Identity = 54/144 (37.50%), Postives = 82/144 (56.94%), Query Frame = 0
Query: 41 LVSILGPFYPPYATSSPSLHASSFMVGLIFAAYPLAQILTAPVAGSLSARYGRLPTCVGGLFLLTGSTVLFALGTRVSLHVLARFLQGSAGACVNVSAFALVLEVSQALPRDLGVQEVVVGAGCMVGPTLGGFLFESLGFQAMF 184
++S LGP++P Y ASS ++GLIF+ + Q LT P+ G LS + RL T + GL +L +LF + + ++ R LQG + VS +L++ S L RD+G+ E G G ++GP +GGFL LGF+A+F
Sbjct: 111 IISCLGPYFPLYVKRK--FGASSTLLGLIFSITSIVQFLTCPLVGPLSRAFSRLVTLMIGLVVLAAGALLFGMLDSIPGFIIGRLLQGIGNGFLEVSGLSLLMRFSTDLRRDIGLLEGASGVGSLLGPLIGGFLSARLGFRALF 252
BLAST of EWM23520.1 vs. NCBI_GenBank
Match: gi|500971531|ref|WP_012035226.1| (MFS transporter [Methanocella arvoryzae] >gi|110622077|emb|CAJ37355.1| putative permease (major facilitator superfamily) [Methanocella arvoryzae MRE50]) HSP 1 Score: 83.5741 bits (205), Expect = 2.053e-15 Identity = 56/172 (32.56%), Postives = 98/172 (56.98%), Query Frame = 0
Query: 26 LVLTMAAVANFLVFALVSILGPFYPPYATSSPSLHASSFMVGLIFAAYPLAQILTAPVAGSLSARYGRLPTCVGGLFLLTGSTVLFALGTRVSLHVLARFLQGSAGACVNVSAFALVLEVSQALPR--DLGVQEVVVGAGCMVGPTLGGFLFESLGFQAMFLALSLLPLSIG 195
L++ A + + +++ LV P P YAT+ L A M+G+IF A+ +A +L + G+LS R GR P V G+FLL + ++F + + L ++AR +QG +GA + AL+ + A R LG+ ++ AG + GP +GG +++ LG++ F+ S+L + +G
Sbjct: 11 LLVAAALLIDMMMYTLVI---PILPAYATT---LGADEMMIGVIFGAFSIALLLFSIPFGALSDRVGRRPLLVAGMFLLALTNLVFVISDNLYLLIVARVIQGISGAATWSAGLALIADTFDASERGSKLGMAMAIMSAGTLSGPVVGGIVYDLLGYRMTFVLPSVLTILLG 176
BLAST of EWM23520.1 vs. NCBI_GenBank
Match: gi|518008037|ref|WP_019178245.1| (MFS transporter [Methanomassiliicoccus luminyensis]) HSP 1 Score: 83.5741 bits (205), Expect = 2.315e-15 Identity = 65/179 (36.31%), Postives = 91/179 (50.84%), Query Frame = 0
Query: 26 LVLTMAAVANFLVFALVSILGPFYPPYATSSPSLHASSFMVGLIFAAYPLAQILTAPVAGSLSARYGRLPTCVGGLFLLTGSTVLFALGTRVSLHVLARFLQGSAGACVNVSAFALVLE--VSQALPRDLGVQEVVVGAGCMVGPTLGGFLFESLGFQAMFLALSLLPLSIGTVTLVAL 202
L++ + AVA F+ ++ P P YA S L AS VG+IFA YP AQ+++ G LS RYGR V GL + ST+ FA+ T VL R LQG A +C + ALV E S ++ LG+ G G + GP +GG L E G+ FL + + +++ AL
Sbjct: 12 LIIAVVAVALFMEAVTYGLIVPVVPSYAYS---LGASDLEVGIIFATYPAAQMVSMMPIGILSDRYGRSRFIVLGLVAMAASTLAFAMSTEKWELVLTRGLQGLASSCTMTAGLALVSEKAASGSMGGSLGIVTATQGGGYVAGPVMGGLLMEWGGYALPFLVTTTVVIAVAVFAYFAL 187
BLAST of EWM23520.1 vs. NCBI_GenBank
Match: gi|196010525|ref|XP_002115127.1| (hypothetical protein TRIADDRAFT_58958 [Trichoplax adhaerens] >gi|190582510|gb|EDV22583.1| hypothetical protein TRIADDRAFT_58958 [Trichoplax adhaerens]) HSP 1 Score: 82.0333 bits (201), Expect = 9.370e-15 Identity = 64/208 (30.77%), Postives = 98/208 (47.12%), Query Frame = 0
Query: 3 NLSNADTPSASSSARSPPAAFHVLVLTMAAVANFLVFALVSILGPFYPPYATSSPSLHASSFMVGLIFAAYPLAQILTAPVAGSLSARYGRLPTCVGGLFLLTGSTVLFAL-------GTRVSLHVLARFLQGSAGACVNVSAFALVLEVSQALPRDLGVQ----EVVVGAGCMVGPTLGGFLFESLGFQAMFLALSLLPLSIGTVTL 199
N N D + + S ++VL +V FL+ ++ ++L PF+P A + H F +GLIFA YP L +P+ G + R G + T GLF G ++LF T V+ +L R +QG AC +A A+ +S P ++ E+ G M GP +GG LF++ GF+ F+ L L IG V +
Sbjct: 17 NSENGDETTTTPEVTSKRNKLIIMVLL--SVTYFLLASVYALLAPFFPQEAKNRNVKH---FEIGLIFAIYPFFIFLISPICGIMMPRIGVVFTLWAGLFFEAGCSILFGFLPNILDHQTFVAFCLLIRGMQGIGAACSQTAALAM---MSSIFPDNVATTTSTLEIFGALGFMTGPPIGGLLFQAGGFKLPFIVLGSTLLVIGCVVI 216
BLAST of EWM23520.1 vs. NCBI_GenBank
Match: gi|1153874372|ref|WP_078394738.1| (MFS transporter [Bacillus patagoniensis]) HSP 1 Score: 81.6481 bits (200), Expect = 9.478e-15 Identity = 57/156 (36.54%), Postives = 88/156 (56.41%), Query Frame = 0
Query: 27 VLTMAAVANFLVFALVSILGPFYPPYATSSPSLHASSFMVGLIFAAYPLAQILTAPVAGSLSARYGRLPTCVGGLFLLTGSTVLFALGTRVSLHVLARFLQGSAGACVNVSAFALVLEV--SQALPRDLGVQEVVVGAGCMVGPTLGGFLFESLGF 180
V+ +A A+ L++ LV PF P YA S L AS +GL+FA+Y +A ++ P+ G+L+ R GR V GL L +T+++AL T + VLAR LQG A A + AL+ EV + + +G+ G ++GP +GG+L+E G+
Sbjct: 13 VVILAIFADMLMYGLVV---PFLPIYAES---LGASQSEIGLLFASYAIALFISTPIFGALADRVGRKKLLVIGLIALAITTIIYALSTSFWILVLARLLQGFAAAIPWTAGLALLAEVFTKEERGKAMGIAMSGQAGGVLLGPPIGGWLYEFGGY 162 The following BLAST results are available for this feature:
BLAST of EWM23520.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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