rna717, rna717 (mRNA) Nannochloropsis gaditana

Overview
Namerna717
Unique Namerna717
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length584
Alignment locationCM002456.1:251268..252455 -

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Properties
Property NameValue
ProductActin-binding FH2
Orig transcript idgnl|cribi|Naga_101782g1.1194.mrna
Orig protein idgnl|cribi|Naga_101782g1.1194
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:251268..252455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101782g1gene688Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna717rna717-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29957.1cds717Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna717 ID=rna717|Name=rna717|organism=Nannochloropsis gaditana|type=mRNA|length=584bp
CAGCCAAAGCCTTGGGCGCCGAGGGTCGGCGCTGGAATGCGACGATGAAA
GAGCGCCATCGGGCGGCAGGCATGGCCATTTTCGCCGCCCGGAACCCGTC
CGAGAGGAGGATTTATCAAGAAGGGATCCTGGATCTGCATGGACTGCACG
TGGCGGAAGCCACCGAGGCGGTGGAGGAGTTGCTTCCGGGTATCTTTGCG
GGGGGCAAAGTGACGGAAGTGACGCTCATTACCGGGACGGGCAAACACTC
CGGAGGGGTTTCGCAGCACCAAGCCCGTTTGTTCCCAGCCATGGAAGCCT
ACCTACAGGATTTGGAAGCCATGGTGGGCGAGGGGAGAGGGAGGAGGGGA
GGGAGCGAGGGAGGGAGACTGTACAAGTGCATCACGGACCCGCAGGGCTA
TCAAGCAGGGTTGAAGGTGTGCTTGTCCCGACCATTGATGGAGCACTGGG
GCCTGGGCGAGCTCACCAGGTAGCGCGACCGGAGCCACGAAAAAGAAACC
TTCTTAACCTCTTCCATTGCACGTTGGTGTCTTTATTTTGGGCTGTGCCA
GATGCTTCATGTGTACTTCCGGGTTGGCTTTCCC
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protein sequence of rna717

>rna717-protein ID=rna717-protein|Name=rna717|organism=Nannochloropsis gaditana|type=polypeptide|length=212bp
MAPCLFFPPGVPISSAEQDVLKYFGEDPKMTPQAFFTTLESFMRVFEQAK
DDLERKERAKERERLLAEKKALASPLNTSLNGSNTRKKSASAGVAKEEEG
GDSTGGGQSVAPMAPQDGGGKGKAGGTVGGEGDPARRRQASAGMSLGGEE
GGKESKFARSLTWETPGSVDVRGRGESTEGGGEGGEDGPRSPNKPPKPAV
RKAGSVPDAFPL
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mRNA from alignment at CM002456.1:251268..252455-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna717 ID=rna717|Name=rna717|organism=Nannochloropsis gaditana|type=mRNA|length=1188bp|location=Sequence derived from alignment at CM002456.1:251268..252455- (Nannochloropsis gaditana)
AGGGAGGAGGGGAGTCCAAGCTGGCCCGGAGCAGCGGACGCCGCCGGAGC
ATTGGGAAAACCTCGACCGTCGTCGCACTCTCACACGTCGACCGCTCTCA
TGGCGCCGTGTCTTTTTTTCCCCCCCGGCGTTCCTATCTCCTCTGCGGAA
CAGGACGTTTTGAAATACTTCGGAGAGGATCCTAAGATGACTCCTCAAGC
CTTCTTCACCACGCTTGAGAGCTTCATGCGGGTGCGTTCCACCCCCTAAA
TTTCCTCCTTCTTCCCCCTCCTCGCTGCCTTTTTTGGGGTTTCTTCAGAG
ATTTCCCATTTTTTCTGGTTAAGTCTACCTCTAACCTATCACGAGAACCT
TTTTCAGACATCTGCCCCGTCTCCGCTCTCCCTCCCTCTCCTCCTCTTCC
CTCCCTCCCTCCCACCCTCCCTCCCTTCCTCAGGTCTTTGAGCAGGCCAA
GGACGATCTGGAGCGGAAAGAACGCGCGAAAGAGCGGGAACGCCTCTTGG
CGGAGAAGAAAGCCCTGGCGTCACCGCTGAATACCAGCTTGAATGGTAGC
AACACTCGGAAGAAGAGCGCGAGCGCAGGGGTGGCCAAGGAGGAGGAAGG
AGGAGATTCGACGGGTGGCGGGCAAAGTGTGGCCCCGATGGCCCCACAGG
ATGGGGGTGGAAAGGGAAAGGCAGGGGGTACCGTGGGTGGGGAGGGAGAT
CCAGCGCGGAGGCGACAGGCCTCGGCAGGCATGAGCTTAGGAGGGGAGGA
GGGAGGGAAGGAAAGCAAATTCGCTCGATCCCTGACCTGGGAAACCCCGG
GCTCGGTGGACGTGAGAGGGAGGGGGGAGAGCACGGAGGGAGGGGGGGAG
GGGGGGGAAGACGGGCCGCGATCGCCGAACAAACCTCCCAAGCCAGCGGT
CCGAAAAGCGGGATCGGTGCCTGACGCGTTCCCTTTGTGAAGAGGGAGGG
CGAGAGGAAGGGAGGGAGGAAGCGAGGCGATGGAGGGAGCGTGGGATGTC
TCCGACGGAGAAAGGAATAGGGGGTCCCGGCGGCGTGAATGAGTGAAGAA
GGGCGAGCGTGAGTGGAGGGCAAGGGGTCCATGAATATAAGGAAGAGTTT
TCGAGGCACGCAGGCACGGGAAAGCCAACCCGGAAGTACACATGAAGCAT
CTGGCACAGCCCAAAATAAAGACACCAACGTGCAATGG
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Coding sequence (CDS) from alignment at CM002456.1:251268..252455-

>rna717 ID=rna717|Name=rna717|organism=Nannochloropsis gaditana|type=CDS|length=1278bp|location=Sequence derived from alignment at CM002456.1:251268..252455- (Nannochloropsis gaditana)
GTCTTTGAGCAGGCCAAGGACGATCTGGAGCGGAAAGAACGCGCGAAAGA
GCGGGAACGCCTCTTGGCGGAGAAGAAAGCCCTGGCGTCACCGCTGAATA
CCAGCTTGAATGGTAGCAACACTCGGAAGAAGAGCGCGAGCGCAGGGGTG
GCCAAGGAGGAGGAAGGAGGAGATTCGACGGGTGGCGGGCAAAGTGTGGC
CCCGATGGCCCCACAGGATGGGGGTGGAAAGGGAAAGGCAGGGGGTACCG
TGGGTGGGGAGGGAGATCCAGCGCGGAGGCGACAGGCCTCGGCAGGCATG
AGCTTAGGAGGGGAGGAGGGAGGGAAGGAAAGCAAATTCGCTCGATCCCT
GACCTGGGAAACCCCGGGCTCGGTGGACGTGAGAGGGAGGGGGGAGAGCA
CGGAGGGAGGGGGGGAGGGGGGGGAAGACGGGCCGCGATCGCCGAACAAA
CCTCCCAAGCCAGCGGTCCGAAAAGCGGGATCGGTGCCTGACGCGTTCCC
TTTGTGAATGGCGCCGTGTCTTTTTTTCCCCCCCGGCGTTCCTATCTCCT
CTGCGGAACAGGACGTTTTGAAATACTTCGGAGAGGATCCTAAGATGACT
CCTCAAGCCTTCTTCACCACGCTTGAGAGCTTCATGCGGGTCTTTGAGCA
GGCCAAGGACGATCTGGAGCGGAAAGAACGCGCGAAAGAGCGGGAACGCC
TCTTGGCGGAGAAGAAAGCCCTGGCGTCACCGCTGAATACCAGCTTGAAT
GGTAGCAACACTCGGAAGAAGAGCGCGAGCGCAGGGGTGGCCAAGGAGGA
GGAAGGAGGAGATTCGACGGGTGGCGGGCAAAGTGTGGCCCCGATGGCCC
CACAGGATGGGGGTGGAAAGGGAAAGGCAGGGGGTACCGTGGGTGGGGAG
GGAGATCCAGCGCGGAGGCGACAGGCCTCGGCAGGCATGAGCTTAGGAGG
GGAGGAGGGAGGGAAGGAAAGCAAATTCGCTCGATCCCTGACCTGGGAAA
CCCCGGGCTCGGTGGACGTGAGAGGGAGGGGGGAGAGCACGGAGGGAGGG
GGGGAGGGGGGGGAAGACGGGCCGCGATCGCCGAACAAACCTCCCAAGCC
AGCGGTCCGAAAAGCGGGATCGGTGCCTGACGCGTTCCCTTTGTGAATGG
CGCCGTGTCTTTTTTTCCCCCCCGGCGTTCCTATCTCCTCTGCGGAACAG
GACGTTTTGAAATACTTCGGAGAGGATCCTAAGATGACTCCTCAAGCCTT
CTTCACCACGCTTGAGAGCTTCATGCGG
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Synonyms
Publications