EWM29957.1, cds717 (CDS) Nannochloropsis gaditana

Overview
NameEWM29957.1
Unique Namecds717
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:252225..252356 -
Alignment locationCM002456.1:251516..252022 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29957.1
ProductActin-binding FH2
Orig transcript idgnl|cribi|Naga_101782g1.1194.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:252225..252356 -
CM002456.1supercontigCM002456.1:251516..252022 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR015425FH2_Formin
Homology
BLAST of EWM29957.1 vs. NCBI_GenBank
Match: gi|585112551|gb|EWM29957.1| (Actin-binding FH2 [Nannochloropsis gaditana])

HSP 1 Score: 416.001 bits (1068), Expect = 7.946e-147
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0
Query:    1 MAPCLFFPPGVPISSAEQDVLKYFGEDPKMTPQAFFTTLESFMRVFEQAKDDLERKERAKERERLLAEKKALASPLNTSLNGSNTRKKSASAGVAKEEEGGDSTGGGQSVAPMAPQDGGGKGKAGGTVGGEGDPARRRQASAGMSLGGEEGGKESKFARSLTWETPGSVDVRGRGESTEGGGEGGEDGPRSPNKPPKPAVRKAGSVPDAFPL 212
            MAPCLFFPPGVPISSAEQDVLKYFGEDPKMTPQAFFTTLESFMRVFEQAKDDLERKERAKERERLLAEKKALASPLNTSLNGSNTRKKSASAGVAKEEEGGDSTGGGQSVAPMAPQDGGGKGKAGGTVGGEGDPARRRQASAGMSLGGEEGGKESKFARSLTWETPGSVDVRGRGESTEGGGEGGEDGPRSPNKPPKPAVRKAGSVPDAFPL
Sbjct:    1 MAPCLFFPPGVPISSAEQDVLKYFGEDPKMTPQAFFTTLESFMRVFEQAKDDLERKERAKERERLLAEKKALASPLNTSLNGSNTRKKSASAGVAKEEEGGDSTGGGQSVAPMAPQDGGGKGKAGGTVGGEGDPARRRQASAGMSLGGEEGGKESKFARSLTWETPGSVDVRGRGESTEGGGEGGEDGPRSPNKPPKPAVRKAGSVPDAFPL 212          
BLAST of EWM29957.1 vs. NCBI_GenBank
Match: gi|224012681|ref|XP_002294993.1| (hypothetical protein THAPSDRAFT_264774 [Thalassiosira pseudonana CCMP1335] >gi|220969432|gb|EED87773.1| hypothetical protein THAPSDRAFT_264774, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 63.929 bits (154), Expect = 2.051e-8
Identity = 27/54 (50.00%), Postives = 42/54 (77.78%), Query Frame = 0
Query:   19 DVLKYFGEDPKMTPQAFFTTLESFMRVFEQAKDDLERKERAKERERLLAEKKAL 72
            D+L++FGED  MTP+AFF T+ +F+ +F+Q   +L+RKE AKER++ + EK+ L
Sbjct:  377 DLLEFFGEDTTMTPEAFFCTVNTFVSMFDQTHKELKRKEEAKERKKRIDEKRKL 430          
BLAST of EWM29957.1 vs. NCBI_GenBank
Match: gi|299473573|emb|CBN77968.1| (Formin-like 2 [Ectocarpus siliculosus])

HSP 1 Score: 60.8474 bits (146), Expect = 2.636e-7
Identity = 24/44 (54.55%), Postives = 36/44 (81.82%), Query Frame = 0
Query:   21 LKYFGEDPKMTPQAFFTTLESFMRVFEQAKDDLERKERAKERER 64
            L YFGEDP++TPQ FFTTL SF++ F++A+  ++R+ + KE+ER
Sbjct: 2770 LSYFGEDPELTPQEFFTTLHSFIKAFDEARAYVDRQAKKKEQER 2813          
The following BLAST results are available for this feature:
BLAST of EWM29957.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585112551|gb|EWM29957.1|7.946e-147100.00Actin-binding FH2 [Nannochloropsis gaditana][more]
gi|224012681|ref|XP_002294993.1|2.051e-850.00hypothetical protein THAPSDRAFT_264774 [Thalassios... [more]
gi|299473573|emb|CBN77968.1|2.636e-754.55Formin-like 2 [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna717rna717Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications