rna7166, rna7166 (mRNA) Nannochloropsis gaditana

Overview
Namerna7166
Unique Namerna7166
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length539
Alignment locationCM002470.1:599792..600165 +

Link to JBrowse

Properties
Property NameValue
Productphosphoglycerate mutase 1 family
Orig transcript idgnl|cribi|Naga_102489g1.5340.mrna
Orig protein idgnl|cribi|Naga_102489g1.5340
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:599792..600165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102489g1gene6928Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7166rna7166-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23524.1cds7149Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7166 ID=rna7166|Name=rna7166|organism=Nannochloropsis gaditana|type=mRNA|length=539bp
GAAGGGGCTTCAGGATCAAGCTTGAGAGCGACACGAGGGAAAATTTGTGA
AAGCATCGCGACGTGTTGGTCACGAATAATTACGCTCGCAGCCGAGGGCA
GGGCCGCACTTTCAGCTTCGGGTTGCTAAGTGGCACCTTGCGTTGGCTGT
CAAAATCACCGCAGACTTCCACCCCCGACGGCGCTGCTGTGGCTTTTATG
CTGACCTTTGTCCGAAGCACTACCTCGTCTCGCACTTGCCGGTGTGCCTT
CTGCTTGGTCTTGGCGGTGACGGCCGCCCGCACCCCGTCCTTCACCTCCA
CGCCTGCTGCCTTCAGCTCGTTTTTTCCCTCCCCCCCCCGACTTCGTCTT
AGGCCACGGCCTCTACCTCCAGTGATGGAGCCTCCCCTTTCCTCCTTCGC
TTCCTACTCCTCCTCCTCCTCCTCCACCAGCCCTTCCACGCACATCAAGC
ACGGCGCAGCCCTCACACCGCTCACAACTTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
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protein sequence of rna7166

>rna7166-protein ID=rna7166-protein|Name=rna7166|organism=Nannochloropsis gaditana|type=polypeptide|length=74bp
MLLAAHGFAFDVAYTSVLKRSIKSLWFCLDGCDHTFIPVKMHWRLNERHY
GSVQSRVRKKIGADSEGVAAIVAR
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mRNA from alignment at CM002470.1:599792..600165+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7166 ID=rna7166|Name=rna7166|organism=Nannochloropsis gaditana|type=mRNA|length=374bp|location=Sequence derived from alignment at CM002470.1:599792..600165+ (Nannochloropsis gaditana)
ATGCTCCTCGCCGCCCACGGCTTCGCCTTCGATGTGGCCTACACTTCCGT
CCTCAAACGCTCCATCAAGAGCCTCTGGTTCTGCCTCGATGGCTGTGATC
ACACCTTCATCCCCGTTAAAATGCACTGGCGCTTGAACGAGCGACACTAT
GGTGAGAACCTcggccttcccttcctccctccctccctccctccctcctt
cccttcctccctcccttccttccttcttacGCGGCTTTGCTCCTTTCTCG
CGTTctcgccttctttccctccctccctccctccctcaggggCCATGCAG
GGTCTGTCCAAAGTCGAGTCCGAAAAAAAATTGGGGCCGATAGTGAGGGA
GTGGCGGCGATCGTGGCGAGGTAG
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Coding sequence (CDS) from alignment at CM002470.1:599792..600165+

>rna7166 ID=rna7166|Name=rna7166|organism=Nannochloropsis gaditana|type=CDS|length=450bp|location=Sequence derived from alignment at CM002470.1:599792..600165+ (Nannochloropsis gaditana)
ATGCTCCTCGCCGCCCACGGCTTCGCCTTCGATGTGGCCTACACTTCCGT
CCTCAAACGCTCCATCAAGAGCCTCTGGTTCTGCCTCGATGGCTGTGATC
ACACCTTCATCCCCGTTAAAATGCACTGGCGCTTGAACGAGCGACACTAT
GGGTCTGTCCAAAGTCGAGTCCGAAAAAAAATTGGGGCCGATAGTGAGGG
AGTGGCGGCGATCGTGGCGAGGTAGATGCTCCTCGCCGCCCACGGCTTCG
CCTTCGATGTGGCCTACACTTCCGTCCTCAAACGCTCCATCAAGAGCCTC
TGGTTCTGCCTCGATGGCTGTGATCACACCTTCATCCCCGTTAAAATGCA
CTGGCGCTTGAACGAGCGACACTATGGGTCTGTCCAAAGTCGAGTCCGAA
AAAAAATTGGGGCCGATAGTGAGGGAGTGGCGGCGATCGTGGCGAGGTAG
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Synonyms
Publications