EWM23524.1, cds7149 (CDS) Nannochloropsis gaditana

Overview
NameEWM23524.1
Unique Namecds7149
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:599792..599942 +
Alignment locationCM002470.1:600092..600165 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23524.1
Productphosphoglycerate mutase 1 family
Orig transcript idgnl|cribi|Naga_102489g1.5340.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:599792..599942 +
CM002470.1supercontigCM002470.1:600092..600165 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0009056catabolic process
GO:0006091generation of precursor metabolites and energy
GO:0005975carbohydrate metabolic process
GO:0006096glycolytic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004619phosphoglycerate mutase activity
GO:0016868intramolecular transferase activity, phosphotransferases
Vocabulary: INTERPRO
TermDefinition
IPR005952Phosphogly_mut1
IPR013078His_Pase_superF_clade-1
IPR029033His_PPase_superfam
Homology
[Close]
BLAST of EWM23524.1 vs. NCBI_GenBank
Match: gi|585104625|gb|EWM23524.1| (phosphoglycerate mutase 1 family [Nannochloropsis gaditana])

HSP 1 Score: 155.221 bits (391), Expect = 4.759e-48
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 
Query:    1 MLLAAHGFAFDVAYTSVLKRSIKSLWFCLDGCDHTFIPVKMHWRLNERHYGSVQSRVRKKIGADSEGVAAIVAR 74
            MLLAAHGFAFDVAYTSVLKRSIKSLWFCLDGCDHTFIPVKMHWRLNERHYGSVQSRVRKKIGADSEGVAAIVAR
Sbjct:    1 MLLAAHGFAFDVAYTSVLKRSIKSLWFCLDGCDHTFIPVKMHWRLNERHYGSVQSRVRKKIGADSEGVAAIVAR 74
[Close]
BLAST of EWM23524.1 vs. NCBI_GenBank
Match: gi|1198248160|ref|WP_086911504.1| (phosphoglyceromutase [Acidovorax sp. NA2] >gi|1197417233|gb|ART47404.1| phosphoglyceromutase [Acidovorax sp. NA2] >gi|1197421847|gb|ART50998.1| phosphoglyceromutase [Acidovorax sp. NA3])

HSP 1 Score: 85.1149 bits (209), Expect = 1.460e-18
Identity = 34/53 (64.15%), Postives = 44/53 (83.02%), Query Frame = 0 
Query:    2 LLAAHGFAFDVAYTSVLKRSIKSLWFCLDGCDHTFIPVKMHWRLNERHYGSVQ 54
            LL A G+ FD+AYTSVLKR+I +LW+CLD  D T++PV+  WRLNERHYG++Q
Sbjct:   42 LLKAEGYEFDIAYTSVLKRAIHTLWYCLDEMDRTWLPVQKSWRLNERHYGALQ 94
[Close]
BLAST of EWM23524.1 vs. NCBI_GenBank
Match: gi|1198264361|ref|WP_086926715.1| (phosphoglyceromutase [Acidovorax sp. P4] >gi|1197428135|gb|ART55879.1| phosphoglyceromutase [Acidovorax sp. P3] >gi|1197432099|gb|ART58224.1| phosphoglyceromutase [Acidovorax sp. P4])

HSP 1 Score: 85.1149 bits (209), Expect = 1.711e-18
Identity = 34/53 (64.15%), Postives = 44/53 (83.02%), Query Frame = 0 
Query:    2 LLAAHGFAFDVAYTSVLKRSIKSLWFCLDGCDHTFIPVKMHWRLNERHYGSVQ 54
            LL A G+ FD+AYTSVLKR+I +LW+CLD  D T++PV+  WRLNERHYG++Q
Sbjct:   42 LLKAEGYEFDIAYTSVLKRAIHTLWYCLDEMDRTWLPVQKSWRLNERHYGALQ 94
[Close]
BLAST of EWM23524.1 vs. NCBI_GenBank
Match: gi|640188058|ref|WP_024816126.1| (phosphoglyceromutase [Acidovorax sp. JHL-3])

HSP 1 Score: 84.3445 bits (207), Expect = 3.594e-18
Identity = 34/53 (64.15%), Postives = 44/53 (83.02%), Query Frame = 0 
Query:    2 LLAAHGFAFDVAYTSVLKRSIKSLWFCLDGCDHTFIPVKMHWRLNERHYGSVQ 54
            LL A G+ FDVA+TSVLKR+I +LW+CLD  D T++PV+  WRLNERHYG++Q
Sbjct:   42 LLKAEGYEFDVAFTSVLKRAIHTLWYCLDEMDRTWLPVQKSWRLNERHYGALQ 94
[Close]
BLAST of EWM23524.1 vs. NCBI_GenBank
Match: gi|1196456896|ref|WP_086122118.1| (phosphoglyceromutase [Hydrogenophaga sp. IBVHS2] >gi|1190605321|gb|OSZ62943.1| phosphoglyceromutase [Hydrogenophaga sp. IBVHS2])

HSP 1 Score: 84.3445 bits (207), Expect = 3.671e-18
Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 0 
Query:    2 LLAAHGFAFDVAYTSVLKRSIKSLWFCLDGCDHTFIPVKMHWRLNERHYGSVQSRVRKKIGA 63
            LL A GF FD+AYTSVLKR+I +LW+ LD  D T++PV  HWRLNERHYG++Q   +  + A
Sbjct:   42 LLKAEGFDFDIAYTSVLKRAIHTLWYTLDAMDRTWLPVVKHWRLNERHYGALQGLNKADMAA 103
[Close]
BLAST of EWM23524.1 vs. NCBI_GenBank
Match: gi|1175964940|gb|OQW84295.1| (phosphoglyceromutase [Proteobacteria bacterium ST_bin16])

HSP 1 Score: 83.9593 bits (206), Expect = 4.494e-18
Identity = 35/62 (56.45%), Postives = 46/62 (74.19%), Query Frame = 0 
Query:    2 LLAAHGFAFDVAYTSVLKRSIKSLWFCLDGCDHTFIPVKMHWRLNERHYGSVQSRVRKKIGA 63
            LL  HGFAFD+AYTSVLKR+I++LW  LD  D  +IP++  WRLNERHYG++Q   + +  A
Sbjct:   42 LLREHGFAFDIAYTSVLKRAIRTLWIVLDEMDQMWIPIQHTWRLNERHYGALQGLNKAETAA 103
[Close]
BLAST of EWM23524.1 vs. NCBI_GenBank
Match: gi|1088872545|emb|SDW22897.1| (phosphoglycerate mutase [Nitrosomonas oligotropha] >gi|1094393369|emb|SEO03631.1| phosphoglycerate mutase [Nitrosomonas oligotropha])

HSP 1 Score: 83.9593 bits (206), Expect = 4.494e-18
Identity = 35/62 (56.45%), Postives = 46/62 (74.19%), Query Frame = 0 
Query:    2 LLAAHGFAFDVAYTSVLKRSIKSLWFCLDGCDHTFIPVKMHWRLNERHYGSVQSRVRKKIGA 63
            LL  HGFAFD+AYTSVLKR+I++LW  LD  D  +IP++  WRLNERHYG++Q   + +  A
Sbjct:   42 LLREHGFAFDIAYTSVLKRAIRTLWIVLDEMDQMWIPIQHTWRLNERHYGALQGLNKAETAA 103
[Close]
BLAST of EWM23524.1 vs. NCBI_GenBank
Match: gi|1124343035|ref|WP_074634183.1| (phosphoglyceromutase [Nitrosospira multiformis])

HSP 1 Score: 83.5741 bits (205), Expect = 7.715e-18
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 0 
Query:    2 LLAAHGFAFDVAYTSVLKRSIKSLWFCLDGCDHTFIPVKMHWRLNERHYGSVQ 54
            LL  +GFAFDVAYTSVLKR+I++LW  LD  D  +IPV + WRLNERHYG++Q
Sbjct:   42 LLRENGFAFDVAYTSVLKRAIRTLWIALDEMDQMWIPVNLSWRLNERHYGALQ 94
[Close]
BLAST of EWM23524.1 vs. NCBI_GenBank
Match: gi|1054947540|ref|WP_066702324.1| (phosphoglyceromutase [Curvibacter delicatus])

HSP 1 Score: 83.1889 bits (204), Expect = 8.037e-18
Identity = 34/53 (64.15%), Postives = 43/53 (81.13%), Query Frame = 0 
Query:    2 LLAAHGFAFDVAYTSVLKRSIKSLWFCLDGCDHTFIPVKMHWRLNERHYGSVQ 54
            LL A G+ FD+AYTSVLKR+I +LW+CLD  D T++PV   WRLNERHYG++Q
Sbjct:   42 LLKAEGYEFDLAYTSVLKRAIHTLWYCLDEMDRTWLPVVKSWRLNERHYGALQ 94
[Close]
BLAST of EWM23524.1 vs. NCBI_GenBank
Match: gi|1084652350|gb|OGP00852.1| (phosphoglyceromutase [Curvibacter sp. GWA2_64_110])

HSP 1 Score: 82.8037 bits (203), Expect = 1.116e-17
Identity = 34/53 (64.15%), Postives = 43/53 (81.13%), Query Frame = 0 
Query:    2 LLAAHGFAFDVAYTSVLKRSIKSLWFCLDGCDHTFIPVKMHWRLNERHYGSVQ 54
            LL A G+ FD+AYTSVLKR+I +LW+CLD  D T++PV   WRLNERHYG++Q
Sbjct:   42 LLKAEGYDFDLAYTSVLKRAIHTLWYCLDEMDRTWLPVVKSWRLNERHYGALQ 94
The following BLAST results are available for this feature:
BLAST of EWM23524.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104625|gb|EWM23524.1|4.759e-48100.00phosphoglycerate mutase 1 family [Nannochloropsis ... [more]
gi|1198248160|ref|WP_086911504.1|1.460e-1864.15phosphoglyceromutase [Acidovorax sp. NA2] >gi|1197... [more]
gi|1198264361|ref|WP_086926715.1|1.711e-1864.15phosphoglyceromutase [Acidovorax sp. P4] >gi|11974... [more]
gi|640188058|ref|WP_024816126.1|3.594e-1864.15phosphoglyceromutase [Acidovorax sp. JHL-3][more]
gi|1196456896|ref|WP_086122118.1|3.671e-1858.06phosphoglyceromutase [Hydrogenophaga sp. IBVHS2] >... [more]
gi|1175964940|gb|OQW84295.1|4.494e-1856.45phosphoglyceromutase [Proteobacteria bacterium ST_... [more]
gi|1088872545|emb|SDW22897.1|4.494e-1856.45phosphoglycerate mutase [Nitrosomonas oligotropha]... [more]
gi|1124343035|ref|WP_074634183.1|7.715e-1866.04phosphoglyceromutase [Nitrosospira multiformis][more]
gi|1054947540|ref|WP_066702324.1|8.037e-1864.15phosphoglyceromutase [Curvibacter delicatus][more]
gi|1084652350|gb|OGP00852.1|1.116e-1764.15phosphoglyceromutase [Curvibacter sp. GWA2_64_110][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7166rna7166Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications