|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100940g2.3591.mrna |
| Orig protein id | gnl|cribi|Naga_100940g2.3591 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002470.1 | supercontig | CM002470.1:596684..598558 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7164 ID=rna7164|Name=rna7164|organism=Nannochloropsis gaditana|type=mRNA|length=1476bp
TGAGGACTCAAATCGATCACTTCTCTTGTTATAATTACCCCTTACCTCCC
CGGTCACGCTTCCACGTTCCTACTTGTTGTGATGTTGAGTGGTGGCGATA
AAACACATCCTGTGCTATTCGGATTTTCCCGAAACCATGGGAGCATGCAC
CGCCAGGAGCGACGATCTAATGCCTCGCCAAGGAAAGAGATCCTGCGACA
ACGCAGCCATTAGGTGGTCAATCAGACTGGAAGGGCTTGCATCAAGGAAA
TCCCTCGTGACAGTCACAACGCATGACGCACGTTATGAAAGACGTGTCGA
TGGTTTATCAGTAGACGGGCCGTAAGGCTTTTGAAGGGGCTGGAGGAGTA
GGTGATACCTCCCCAGGAGCCGGAAGCACACGCCCTTCTTCATACGCATG
CACCGCCCTGCGCTTCGTTTGTGCCGTAATATTTGGCGCTTAATAGGCTA
ACAGTGCCTCGACACGTCCATGGATGTGCACGTTGGAGGGTAGCGACCAC
TCACGGATGCCCTGTCGGTGATAATGGTCCGCGGGCCTCGACTCCGGGAT
AGACCACGTCGTACCCTAGTCTCTTGTATGAGTCTCTTGTCCCAACCCAT
TTCTCGTCTTGACCACTCCTCGCGCAGGGCCCCCCCACTAGCACAATGGC
TCGCTCCCCTTGCCTGTGGAGTGGGCTTCTGGTCGCCCTCCTCTTGTCCC
TGATGGCCTCGTCCCACGCTTTTTTCATGGCAGCTCCGCTCCGACCTCCC
GCTTCGACCCCCGCTCCCTATGGGCTACCCCGGGGGCGGCAACAGGGTGC
CATGAGCATGATGGGTGGGAAAGTTGCCAAATTTGGTTTCTTCTCCCCGG
CGGTGATCGTGGCCAAGATCGTCCTGGGCGAGAAGAAACTGAACAAGGTC
CGAGGCAAGGCTATCTCGCTCCACTCCCAGGCCATCACGGAGTTCTGCAC
TTTCGTGGGCGCCCAGGGAAAGACTCGGAACCGCTTGATCAAGAAGGCAA
AAACGAACGGAGATGAACTGGGTTTCCTCTGGTAGAGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGGGGAAAGGATTGTAACATGCGCGCAGGGAGTAATC
GCTGAAGGAAGGAAGGAGGAAAGAATCGTTTGAGAACCCGACCCTTTGCT
GTATCTTGAGGAGGAGGGAAAGGCCCGAGGGAGGTCGCCAATGGGGTGCT
TTCGAACAACATGTTCTTTCTTTCCCTTGTTGTGCGTTTTCCCTCCATGC
ACCTTCCTGCGTGCTTCCGCTTGTTACGGTGACCAGTACACAAGGTAGAA
AGGACGCCTACACTCCTGCGATGGGGGTTGGGCCCTTCCCTCCCCATCAT
GCTCTCTTCAAGGACCGTTTCACACAGAGGAAGGCTTGTCCGTCTGAGGC
AGCAGTTCTCTAGAAGCCTGTAGAGGATACCTTCCAAATCCATCACTTTC
TTTCCTACCTTCCCTTTTCGTATCCC back to topprotein sequence of rna7164 >rna7164-protein ID=rna7164-protein|Name=rna7164|organism=Nannochloropsis gaditana|type=polypeptide|length=275bp
MESIEALTDVECRAGEEALKRRYCRRANSSTSTPAGPTIHCTQPCSMAII
HAHGKGSRTTTQKTTASRDWTIHKRRLPSGTSRQRKRRRPFLPAMLLLAG
AFGNTGPGSEPVEAFIPPRHQGIAPYRERRPLTHTHPGHSHPVFRTTGVS
GRSCQSYRDHGPFKRGGAVEDGEEPGSTEDKTTPSFSEDSDGFAGTGLSP
KEALVTILGVNPLTLLLAFLAAGMLTANAILGPGWLRPSVGLKPTTFQSR
NLVLPLDQPGFLFPKDASLWGGDPE back to topmRNA from alignment at CM002470.1:596684..598558+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7164 ID=rna7164|Name=rna7164|organism=Nannochloropsis gaditana|type=mRNA|length=1875bp|location=Sequence derived from alignment at CM002470.1:596684..598558+ (Nannochloropsis gaditana)
TCATAACGTGCGTCATGCGTTGTGACTGTCACGAGGGATTTCCTTGATGC
AAGCCCTTCCAGTCTGATTGACCACCTAATGGCTGCGTTGTCGCAGGATC
TCTTTCCTTGGCGAGGCATTAGATCGTCGCTCCTGGCGGTGCATGCTCCC
ATGGTTTCGGGAAAATCCGAATAGCACAGGATGTGTTTTATCGCCACCAC
TCAACATCACAACAAGTAGGAACGTGGAAGCGTGACCGGGGAGGTAAGGG
GTAATTATAACAAGAGAAGTGATCGATTTGAGTCCTCATCGGATGGCTAC
CACTCAGTTCTTGCACCTTTAGCAGCTTCCAAGCCAGATTACTTAGGTTT
TAGAATTacatccgcctcctctcacgGCGTAATGTTACGTTTTCATACCT
CCAACACGTCaggcaggaggtgggaaaggccaAGGGCAAGCGCACGGCCA
GTTTTACCAAACAACCATACACATTGATATATGGAAAGCATTGAAGCCTT
GACCGATGTTGAGTgtagggcgggcgaggaagcctTAAAACGAAGATACT
GCCGGCGTGCGaacagcagcaccagcacaCCCGCGGGCCCCACGATTCAC
TGCACGCAGCCATGCTCCATGGCGATCATCCATGCGCATGGAAAGGGATC
ACGCACGACCACGCAAAAGACAACTGCTTCCCGAGACTGGACCATCCACA
AACGTCGTCTCCCCTCGGGCACATCGCGTCAGCGCAAACGGAgacggccc
ttcctcccggccatgctcctcctcgcggggGCCTTCGGAAATACGGGACC
AGGCAGCGAGCCGGTCGAGGCCTTCATTCCCCCTAGGCACCAGGGCATCG
CCCCCTACCGGGAGCGAAGGCCACTCACACACACTCACCCAGGTCACTCT
CACCCGGTGTTCAGGACCACGGGCGTGTCAGGGCGGTCATGCCAAAGCTA
CCGCGACCACGGGCCTTTCAAGCGAGGCGGGGCCGttgaggacggagagg
agccTGGGAGTACTGAGGACAAGGTAGGTGCTAgccgcttttccctcccc
ttctctttctctcctgcACAAAGTGTCGAGGAGTTCTTGTCCAGGTAGTG
AGCTGGAAGGACGTGAAGGCGgggcttctctccctttccaggcATGCGTA
GCGGGAGCTAGCTTCATGGTCTCGTGCCATCCTGTGAATAAGGAAGGCTG
TATCTCTCCCTCATGACCATCGggccccttccatcccaaGACCACACCTT
CTTTTTCGGAGGACAGCGATGGATTCGCGGGCACAGGCCTCTCTCCCAAG
GAAGCCCTTGTCACCATCCTGGGAGTCAATCcgctcaccctcctccttgc
cttcctggCCGCCGGTATGCTGACAGCCAATGCTATCTTGGGACCTGGCT
GGCTCCGTCCTTCTGTGGGCTTAAAACCGACCACCTTCCAGTCGAGGAAT
TTGGTCTTGCCGTTGGATCAAccgggcttcctcttcccaaaAGATGCGTC
CTTATGGGGGGGGGACCCGGAGTGAGAGGGTCTGTGGAAGTCGAAACTGT
CCGACGCTAGGAGATAACCTGGTCCAACGAAACAGGACTGGGCTCCTATA
CCGAATTGTGAATAGGTGTACTGGAGGGAGCCGGGGATTGTAAAGGGAGA
GCAGGGCATGTAACtggcgaggagaggggggaggttactTTTTAAAAAGT
TATCAGGATTCCCTACTTCAGGCTTTTAAGAATCGTACCCATCCTGAAAA
CAAAAAAGCTACTATATTATGCCATGTTGTAATTGGAACTTTCGGGCACC
ACGTACTTGGGTATGGCACGAGCGACTTTTGAGTATTTTGGCTTGTCTGA
ACATTCCGTCTagctccctccgtcc back to topCoding sequence (CDS) from alignment at CM002470.1:596684..598558+ >rna7164 ID=rna7164|Name=rna7164|organism=Nannochloropsis gaditana|type=CDS|length=1656bp|location=Sequence derived from alignment at CM002470.1:596684..598558+ (Nannochloropsis gaditana)
ATGGAAAGCATTGAAGCCTTGACCGATGTTGAGTgtagggcgggcgagga
agcctTAAAACGAAGATACTGCCGGCGTGCGaacagcagcaccagcacaC
CCGCGGGCCCCACGATTCACTGCACGCAGCCATGCTCCATGGCGATCATC
CATGCGCATGGAAAGGGATCACGCACGACCACGCAAAAGACAACTGCTTC
CCGAGACTGGACCATCCACAAACGTCGTCTCCCCTCGGGCACATCGCGTC
AGCGCAAACGGAgacggcccttcctcccggccatgctcctcctcgcgggg
GCCTTCGGAAATACGGGACCAGGCAGCGAGCCGGTCGAGGCCTTCATTCC
CCCTAGGCACCAGGGCATCGCCCCCTACCGGGAGCGAAGGCCACTCACAC
ACACTCACCCAGGTCACTCTCACCCGGTGTTCAGGACCACGGGCGTGTCA
GGGCGGTCATGCCAAAGCTACCGCGACCACGGGCCTTTCAAGCGAGGCGG
GGCCGttgaggacggagaggagccTGGGAGTACTGAGGACAAGACCACAC
CTTCTTTTTCGGAGGACAGCGATGGATTCGCGGGCACAGGCCTCTCTCCC
AAGGAAGCCCTTGTCACCATCCTGGGAGTCAATCcgctcaccctcctcct
tgccttcctggCCGCCGGTATGCTGACAGCCAATGCTATCTTGGGACCTG
GCTGGCTCCGTCCTTCTGTGGGCTTAAAACCGACCACCTTCCAGTCGAGG
AATTTGGTCTTGCCGTTGGATCAAccgggcttcctcttcccaaaAGATGC
GTCCTTATGGGGGGGGGACCCGGAGTGAATGGAAAGCATTGAAGCCTTGA
CCGATGTTGAGTgtagggcgggcgaggaagcctTAAAACGAAGATACTGC
CGGCGTGCGaacagcagcaccagcacaCCCGCGGGCCCCACGATTCACTG
CACGCAGCCATGCTCCATGGCGATCATCCATGCGCATGGAAAGGGATCAC
GCACGACCACGCAAAAGACAACTGCTTCCCGAGACTGGACCATCCACAAA
CGTCGTCTCCCCTCGGGCACATCGCGTCAGCGCAAACGGAgacggccctt
cctcccggccatgctcctcctcgcggggGCCTTCGGAAATACGGGACCAG
GCAGCGAGCCGGTCGAGGCCTTCATTCCCCCTAGGCACCAGGGCATCGCC
CCCTACCGGGAGCGAAGGCCACTCACACACACTCACCCAGGTCACTCTCA
CCCGGTGTTCAGGACCACGGGCGTGTCAGGGCGGTCATGCCAAAGCTACC
GCGACCACGGGCCTTTCAAGCGAGGCGGGGCCGttgaggacggagaggag
ccTGGGAGTACTGAGGACAAGACCACACCTTCTTTTTCGGAGGACAGCGA
TGGATTCGCGGGCACAGGCCTCTCTCCCAAGGAAGCCCTTGTCACCATCC
TGGGAGTCAATCcgctcaccctcctccttgccttcctggCCGCCGGTATG
CTGACAGCCAATGCTATCTTGGGACCTGGCTGGCTCCGTCCTTCTGTGGG
CTTAAAACCGACCACCTTCCAGTCGAGGAATTTGGTCTTGCCGTTGGATC
AAccgggcttcctcttcccaaaAGATGCGTCCTTATGGGGGGGGGACCCG
GAGTGA back to top
|