rna7163, rna7163 (mRNA) Nannochloropsis gaditana

Overview
Namerna7163
Unique Namerna7163
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length363
Alignment locationCM002470.1:595042..596971 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100940g3.3590.mrna
Orig protein idgnl|cribi|Naga_100940g3.3590
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:595042..596971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100940g3gene6925Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7163rna7163-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23526.1cds7146Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7163 ID=rna7163|Name=rna7163|organism=Nannochloropsis gaditana|type=mRNA|length=363bp
AGATGGGCGCAGGCATGAACACGCAGGAGCTCTACCGCATCGCCATCTCC
TACAAGACCAAGCTGGGCCCCTTTGCCACCCCCCGGATTCTCAACGAGTA
TTTGAAAGCCGTCTTTCGCGCCCCCGACCTCTCCTCCCATGTGCGTCCTC
CTTCCCTCCCTCCCTTTCTCTCTCTATCTATATATATATATATATGTATA
TCTCTCTCTATATATATGTATGTATATAGATATAGACCTCTCCTCCCATG
TGCGATCTCCTTCCCACCCTCACTTTTTCTCTCTCTATCTATCTATCTAT
CTAGTCTACCCATCTATCTATCTATATATATATATATATATATATATATA
TATATATATATAT
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protein sequence of rna7163

>rna7163-protein ID=rna7163-protein|Name=rna7163|organism=Nannochloropsis gaditana|type=polypeptide|length=129bp
MARSPCLWSGLLVALLLSLMASSHAFFMAAPLRPPASTPAPYGLPRGRQQ
GAMSMMGGKVAKFGFFSPAVIVAKIVLGEKKLNKVRGKAISLHSQAITEF
CTFVGAQGKTRNRLIKKAKTNGDELGFLW
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mRNA from alignment at CM002470.1:595042..596971-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7163 ID=rna7163|Name=rna7163|organism=Nannochloropsis gaditana|type=mRNA|length=1930bp|location=Sequence derived from alignment at CM002470.1:595042..596971- (Nannochloropsis gaditana)
TGAGGACTCAAATCGATCACTTCTCTTGTTATAATTACCCCTTACCTCCC
CGGTCACGCTTCCACGTTCCTACTTGTTGTGATGTTGAGTGGTGGCGATA
AAACACATCCTGTGCTATTCGGATTTTCCCGAAACCATGGGAGCATGCAC
CGCCAGGAGCGACGATCTAATGCCTCGCCAAGGAAAGAGATCCTGCGACA
ACGCAGCCATTAGGTGGTCAATCAGACTGGAAGGGCTTGCATCAAGGAAA
TCCCTCGTGACAGTCACAACGCATGACGCACGTTATGAAAGACGTGTCGA
TGGTTTATCAGTAGACGGGCCGTAAGGCTTTTGAAGGGGCTGGAGGAGTA
GGTGATACCTCCCCAGGAGCCGGAAGCACACGCCCTTCTTCATACGCATG
CACCGCCCTGCGCTTCGTTTGTGCCGTAATATTTGGCGCTTAATAGGCTA
ACAGTGCCTCGACACGTCCATGGATGTGCACGTTGGAGGGTAGCGACCAC
TCACGGATGCCCTGTCGGTGATAATGGTCCGCGGGCCTCGACTCCGGGAT
AGACCACGTCGTACCCTAGTCTCTTGTATGAGTCTCTTGTCCCAACCCAT
TTCTCGTCTTGACCACTCCTCGCGCAGGGCCCCCCCACTAGCACAATGGC
TCGCTCCCCTTGCCTGTGGAGTGGGCTTCTGGTCGCCCTCCTCTTGTCCC
TGATGGCCTCGTCCCACGCTTTTTTCATGGCAGCTCCGCTCCGACCTCCC
GCTTCGACCCCCGCTCCCTATGGGCTACCCCGGGGGCGGCAACAGGGTGC
CATGAGCATGATGGGTGGGAAAGTTGCCAAATTTGGTTTCTTCTCCCCGG
CGGTGATCGTGGCCAAGATCGTCCTGGGCGAGAAGAAACTGAACAAGGTA
CGTGAGGGGAAGGAGATGGGGAGGAAGGGGGCAACGTGTTGGGTGTGAAG
AACCAGGCGCGTCTCCTGCGTCACTTTTGTGCGCGGAGGGAGGGTGACAC
AGTGCGAATGAAGGTGATGCCCTGGCAGTAATAACTGGGGGGAGGCGTCG
ATGGCAATGTGGGAGGACGAGCGTGAGGAACGTACTCACGGATGAAGGAG
TGAGGGGGCAAAGTGTATACCACCAGGGTGCGAGAGGTGGTATTTCTCCC
TCAGCCTACATCTATGAGAGTGACTCTTACCCCAGGAATCACATTGCGAT
GGCTCCTTCTGAGCTGTCCTCTCACGTCTCGCGTGCCTACGGGTCAAGGC
CTTCATCTCGATGACATGCTCCCATTCCCCCTCCTCCTCCCTCCCCTCTT
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCTCCCTCCACCCTA
GGTCCGAGGCAAGGCTATCTCGCTCCACTCCCAGGCCATCACGGAGTTCT
GCACTTTCGTGGGCGCCCAGGGAAAGACTCGGAACCGCTTGATCAAGAAG
GCAAAAACGAACGGAGATGAACTGGGTTTCCTCTGGTAGAGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGGGGAAAGGATTGTAACATGCGCGCAGGGAGT
AATCGCTGAAGGAAGGAAGGAGGAAAGAATCGTTTGAGAACCCGACCCTT
TGCTGTATCTTGAGGAGGAGGGAAAGGCCCGAGGGAGGTCGCCAATGGGG
TGCTTTCGAACAACATGTTCTTTCTTTCCCTTGTTGTGCGTTTTCCCTCC
ATGCACCTTCCTGCGTGCTTCCGCTTGTTACGGTGACCAGTACACAAGGT
AGAAAGGACGCCTACACTCCTGCGATGGGGGTTGGGCCCTTCCCTCCCCA
TCATGCTCTCTTCAAGGACCGTTTCACACAGAGGAAGGCTTGTCCGTCTG
AGGCAGCAGTTCTCTAGAAGCCTGTAGAGGATACCTTCCAAATCCATCAC
TTTCTTTCCTACCTTCCCTTTTCGTATCCC
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Coding sequence (CDS) from alignment at CM002470.1:595042..596971-

>rna7163 ID=rna7163|Name=rna7163|organism=Nannochloropsis gaditana|type=CDS|length=780bp|location=Sequence derived from alignment at CM002470.1:595042..596971- (Nannochloropsis gaditana)
GTCCGAGGCAAGGCTATCTCGCTCCACTCCCAGGCCATCACGGAGTTCTG
CACTTTCGTGGGCGCCCAGGGAAAGACTCGGAACCGCTTGATCAAGAAGG
CAAAAACGAACGGAGATGAACTGGGTTTCCTCTGGTAGATGGCTCGCTCC
CCTTGCCTGTGGAGTGGGCTTCTGGTCGCCCTCCTCTTGTCCCTGATGGC
CTCGTCCCACGCTTTTTTCATGGCAGCTCCGCTCCGACCTCCCGCTTCGA
CCCCCGCTCCCTATGGGCTACCCCGGGGGCGGCAACAGGGTGCCATGAGC
ATGATGGGTGGGAAAGTTGCCAAATTTGGTTTCTTCTCCCCGGCGGTGAT
CGTGGCCAAGATCGTCCTGGGCGAGAAGAAACTGAACAAGGTCCGAGGCA
AGGCTATCTCGCTCCACTCCCAGGCCATCACGGAGTTCTGCACTTTCGTG
GGCGCCCAGGGAAAGACTCGGAACCGCTTGATCAAGAAGGCAAAAACGAA
CGGAGATGAACTGGGTTTCCTCTGGTAGATGGCTCGCTCCCCTTGCCTGT
GGAGTGGGCTTCTGGTCGCCCTCCTCTTGTCCCTGATGGCCTCGTCCCAC
GCTTTTTTCATGGCAGCTCCGCTCCGACCTCCCGCTTCGACCCCCGCTCC
CTATGGGCTACCCCGGGGGCGGCAACAGGGTGCCATGAGCATGATGGGTG
GGAAAGTTGCCAAATTTGGTTTCTTCTCCCCGGCGGTGATCGTGGCCAAG
ATCGTCCTGGGCGAGAAGAAACTGAACAAG
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Synonyms
Publications