EWM23526.1, cds7146 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23526.1 vs. NCBI_GenBank
Match: gi|585104628|gb|EWM23526.1| (hypothetical protein Naga_100940g3 [Nannochloropsis gaditana]) HSP 1 Score: 261.922 bits (668), Expect = 1.348e-88 Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0
Query: 1 MARSPCLWSGLLVALLLSLMASSHAFFMAAPLRPPASTPAPYGLPRGRQQGAMSMMGGKVAKFGFFSPAVIVAKIVLGEKKLNKVRGKAISLHSQAITEFCTFVGAQGKTRNRLIKKAKTNGDELGFLW 129
MARSPCLWSGLLVALLLSLMASSHAFFMAAPLRPPASTPAPYGLPRGRQQGAMSMMGGKVAKFGFFSPAVIVAKIVLGEKKLNKVRGKAISLHSQAITEFCTFVGAQGKTRNRLIKKAKTNGDELGFLW
Sbjct: 1 MARSPCLWSGLLVALLLSLMASSHAFFMAAPLRPPASTPAPYGLPRGRQQGAMSMMGGKVAKFGFFSPAVIVAKIVLGEKKLNKVRGKAISLHSQAITEFCTFVGAQGKTRNRLIKKAKTNGDELGFLW 129
BLAST of EWM23526.1 vs. NCBI_GenBank
Match: gi|298712733|emb|CBJ33332.1| (proton gradient regulation [Ectocarpus siliculosus]) HSP 1 Score: 107.457 bits (267), Expect = 2.681e-27 Identity = 64/144 (44.44%), Postives = 86/144 (59.72%), Query Frame = 0
Query: 12 LVALLLSLMASSHAFFMAAPLRPPAST-------------PAPYGL-------------PRGRQQGAMSMMGGKVAKFGFFSPAVIVAKIVLGEKKLNKVRGKAISLHSQAITEFCTFVGAQGKTRNRLIKKAKTNGDELGFLW 129
++ +LL+ +A+S AF +A P R ST P+ L PR +G + M GKV+KFG FSPAV+ AK++LGE +LNK+RGK I+LHSQ I E+C +VGA K R LI+KAK NGD+LGFL+
Sbjct: 4 ILCILLACVAASQAFVVA-PARAGLSTMPSLREGSFVCSLPSTASLTVAQGGGNVAVSRPRRTSRGELRM--GKVSKFGIFSPAVVAAKVILGESRLNKIRGKGIALHSQVIQEYCRWVGAPPKVRGMLIRKAKGNGDDLGFLF 144
BLAST of EWM23526.1 vs. NCBI_GenBank
Match: gi|873239004|emb|CEL94740.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 105.145 bits (261), Expect = 3.008e-26 Identity = 49/71 (69.01%), Postives = 56/71 (78.87%), Query Frame = 0
Query: 58 GKVAKFGFFSPAVIVAKIVLGEKKLNKVRGKAISLHSQAITEFCTFVGAQGKTRNRLIKKAKTNGDELGFL 128
GK A FG FSPAV++ K+VLG+K+LNKVRGK I+LHSQ IT+FC F GAQ R RLIKKAKT GD LG L
Sbjct: 83 GKQATFGLFSPAVLIGKLVLGDKQLNKVRGKIIALHSQVITQFCDFTGAQRSMRQRLIKKAKTTGDRLGML 153
BLAST of EWM23526.1 vs. NCBI_GenBank
Match: gi|676389571|ref|XP_009038064.1| (hypothetical protein AURANDRAFT_27980 [Aureococcus anophagefferens] >gi|323451572|gb|EGB07449.1| hypothetical protein AURANDRAFT_27980 [Aureococcus anophagefferens]) HSP 1 Score: 101.293 bits (251), Expect = 7.867e-26 Identity = 48/71 (67.61%), Postives = 56/71 (78.87%), Query Frame = 0
Query: 58 GKVAKFGFFSPAVIVAKIVLGEKKLNKVRGKAISLHSQAITEFCTFVGAQGKTRNRLIKKAKTNGDELGFL 128
G +AKFG FSPAV KI+LG+K L+++RGK ISLHSQAI EFC FVGA KT+ L+KKAK NGD LGFL
Sbjct: 2 GSMAKFGIFSPAVYAGKILLGDKGLDQIRGKGISLHSQAINEFCIFVGASTKTKGLLVKKAKNNGDTLGFL 72
BLAST of EWM23526.1 vs. NCBI_GenBank
Match: gi|1072231024|gb|OEU15757.1| (hypothetical protein FRACYDRAFT_209197 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 99.3673 bits (246), Expect = 2.633e-24 Identity = 56/108 (51.85%), Postives = 70/108 (64.81%), Query Frame = 0
Query: 22 SSHAFFMAAPLRPPASTPAPYGLPRGRQQGAMSM-MGGKVAKFGFFSPAVIVAKIVLGEKKLNKVRGKAISLHSQAITEFCTFVGAQGKTRNRLIKKAKTNGDELGFL 128
S +F ++ A+T AP + G S+ MGGK +KFG FSPAV AK+VLG +LNK+RGK IS+HSQ I EFC ++GA R +LIKKAK NGD LGFL
Sbjct: 29 SGSSFLISQRSSATATTAAPV------RTGVSSLHMGGKKSKFGVFSPAVYGAKVVLGTARLNKIRGKGISIHSQTIGEFCQWIGAY-HLRTKLIKKAKVNGDILGFL 129
BLAST of EWM23526.1 vs. NCBI_GenBank
Match: gi|219115826|ref|XP_002178708.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409475|gb|EEC49406.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 98.9821 bits (245), Expect = 4.299e-24 Identity = 51/78 (65.38%), Postives = 57/78 (73.08%), Query Frame = 0
Query: 51 GAMSMMGGKVAKFGFFSPAVIVAKIVLGEKKLNKVRGKAISLHSQAITEFCTFVGAQGKTRNRLIKKAKTNGDELGFL 128
G +M G AKFG FSPAV AK+VLG+ KLNK+RGKAISLHSQ I EFC + GA R +LIKKAK NGD LGFL
Sbjct: 55 GVSNMRMGSQAKFGVFSPAVYAAKVVLGQDKLNKIRGKAISLHSQYIGEFCEWAGAY-HLRTKLIKKAKVNGDTLGFL 131
BLAST of EWM23526.1 vs. NCBI_GenBank
Match: gi|223999569|ref|XP_002289457.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974665|gb|EED92994.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 98.5969 bits (244), Expect = 4.460e-24 Identity = 56/96 (58.33%), Postives = 62/96 (64.58%), Query Frame = 0
Query: 33 RPPASTPAPYGLPRGRQQGAMSMMGGKVAKFGFFSPAVIVAKIVLGEKKLNKVRGKAISLHSQAITEFCTFVGAQGKTRNRLIKKAKTNGDELGFL 128
RP A+ P + S+ G AKFG FSPAV VAKI LG +LNK+RGKAISLHSQ I EFC + GA R RLIKKAKTNGD LGFL
Sbjct: 41 RPRAAAPVA-------RTSKTSLQMGSQAKFGIFSPAVYVAKIGLGNDRLNKIRGKAISLHSQYIGEFCEWAGAY-HLRTRLIKKAKTNGDTLGFL 128
BLAST of EWM23526.1 vs. NCBI_GenBank
Match: gi|255079358|ref|XP_002503259.1| (predicted protein [Micromonas commoda] >gi|226518525|gb|ACO64517.1| predicted protein [Micromonas commoda]) HSP 1 Score: 96.6709 bits (239), Expect = 2.678e-23 Identity = 50/106 (47.17%), Postives = 72/106 (67.92%), Query Frame = 0
Query: 26 FFMAAPL--RPPASTPAPYGLPRGR-QQGAMSMMGGKVAKFGFFSPAVIVAKIVLGEKKLNKVRGKAISLHSQAITEFCTFVGAQGKTRNRLIKKAKTNGDELGFL 128
F +AP+ R A+ PA PR R ++GA+ ++ G + G F+P V+VA+ ++G K+ N++RGKAI+LHSQ IT+FC +GA GK R LI+ AK NG +LGFL
Sbjct: 20 FKQSAPMGARVAAAVPAQ---PRARTERGALKVVAGNDYEGGLFAPIVVVARNIIGVKRFNQIRGKAIALHSQVITDFCKEIGADGKVRQNLIRTAKQNGGKLGFL 122
BLAST of EWM23526.1 vs. NCBI_GenBank
Match: gi|303283974|ref|XP_003061278.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226457629|gb|EEH54928.1| predicted protein [Micromonas pusilla CCMP1545]) HSP 1 Score: 93.9745 bits (232), Expect = 1.409e-22 Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 0
Query: 36 ASTPAPYGLPRGRQQGAMSMMGGKVAKFGFFSPAVIVAKIVLGEKKLNKVRGKAISLHSQAITEFCTFVGAQGKTRNRLIKKAKTNGDELGFL 128
A+TPA R +G++ ++ G + G F+P V+VA+ V+G K+ N++RGKAI+LHSQ ITEFC +GA GK R LI+ AK NG +LGFL
Sbjct: 7 ATTPASR---RATSRGSLRVVAGNDYEGGLFAPIVVVARDVIGVKRFNQIRGKAIALHSQVITEFCKEIGADGKVRQNLIRTAKQNGGKLGFL 96
BLAST of EWM23526.1 vs. NCBI_GenBank
Match: gi|545702229|ref|XP_005703445.1| (electron carrier protein (proton gradient regulation 5) isoform 1 [Galdieria sulphuraria] >gi|452819874|gb|EME26925.1| electron carrier protein (proton gradient regulation 5) isoform 1 [Galdieria sulphuraria]) HSP 1 Score: 93.5893 bits (231), Expect = 4.198e-22 Identity = 47/97 (48.45%), Postives = 64/97 (65.98%), Query Frame = 0
Query: 35 PASTPAPYGLPRGR---QQGAMSMMGGKVAKFGFFSPAVIVAKIVLGEKKLNKVRGKAISLHSQAITEFCTFVGAQGKTRNRLIKKAKTNGDELGFL 128
P + G+ GR +Q A+ + GKV+ FG F+P V V + VLG+ + NK+RG+AI+LHSQ ITEFC +VG + R LI+ AKTNG +LGFL
Sbjct: 32 PHTLRVNKGILVGRRRIKQSAIEVYMGKVSNFGPFTPVVYVTRWVLGKDRFNKIRGRAIALHSQVITEFCKYVGMDARLRQGLIRLAKTNGSKLGFL 128 The following BLAST results are available for this feature:
BLAST of EWM23526.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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