EWM23526.1, cds7146 (CDS) Nannochloropsis gaditana

Overview
NameEWM23526.1
Unique Namecds7146
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:596075..596326 -
Alignment locationCM002470.1:595483..595620 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23526.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100940g3.3590.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:596075..596326 -
CM002470.1supercontigCM002470.1:595483..595620 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009416response to light stimulus
GO:0015979photosynthesis
GO:0006091generation of precursor metabolites and energy
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM23526.1 vs. NCBI_GenBank
Match: gi|585104628|gb|EWM23526.1| (hypothetical protein Naga_100940g3 [Nannochloropsis gaditana])

HSP 1 Score: 261.922 bits (668), Expect = 1.348e-88
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0
Query:    1 MARSPCLWSGLLVALLLSLMASSHAFFMAAPLRPPASTPAPYGLPRGRQQGAMSMMGGKVAKFGFFSPAVIVAKIVLGEKKLNKVRGKAISLHSQAITEFCTFVGAQGKTRNRLIKKAKTNGDELGFLW 129
            MARSPCLWSGLLVALLLSLMASSHAFFMAAPLRPPASTPAPYGLPRGRQQGAMSMMGGKVAKFGFFSPAVIVAKIVLGEKKLNKVRGKAISLHSQAITEFCTFVGAQGKTRNRLIKKAKTNGDELGFLW
Sbjct:    1 MARSPCLWSGLLVALLLSLMASSHAFFMAAPLRPPASTPAPYGLPRGRQQGAMSMMGGKVAKFGFFSPAVIVAKIVLGEKKLNKVRGKAISLHSQAITEFCTFVGAQGKTRNRLIKKAKTNGDELGFLW 129          
BLAST of EWM23526.1 vs. NCBI_GenBank
Match: gi|298712733|emb|CBJ33332.1| (proton gradient regulation [Ectocarpus siliculosus])

HSP 1 Score: 107.457 bits (267), Expect = 2.681e-27
Identity = 64/144 (44.44%), Postives = 86/144 (59.72%), Query Frame = 0
Query:   12 LVALLLSLMASSHAFFMAAPLRPPAST-------------PAPYGL-------------PRGRQQGAMSMMGGKVAKFGFFSPAVIVAKIVLGEKKLNKVRGKAISLHSQAITEFCTFVGAQGKTRNRLIKKAKTNGDELGFLW 129
            ++ +LL+ +A+S AF +A P R   ST             P+   L             PR   +G + M  GKV+KFG FSPAV+ AK++LGE +LNK+RGK I+LHSQ I E+C +VGA  K R  LI+KAK NGD+LGFL+
Sbjct:    4 ILCILLACVAASQAFVVA-PARAGLSTMPSLREGSFVCSLPSTASLTVAQGGGNVAVSRPRRTSRGELRM--GKVSKFGIFSPAVVAAKVILGESRLNKIRGKGIALHSQVIQEYCRWVGAPPKVRGMLIRKAKGNGDDLGFLF 144          
BLAST of EWM23526.1 vs. NCBI_GenBank
Match: gi|873239004|emb|CEL94740.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 105.145 bits (261), Expect = 3.008e-26
Identity = 49/71 (69.01%), Postives = 56/71 (78.87%), Query Frame = 0
Query:   58 GKVAKFGFFSPAVIVAKIVLGEKKLNKVRGKAISLHSQAITEFCTFVGAQGKTRNRLIKKAKTNGDELGFL 128
            GK A FG FSPAV++ K+VLG+K+LNKVRGK I+LHSQ IT+FC F GAQ   R RLIKKAKT GD LG L
Sbjct:   83 GKQATFGLFSPAVLIGKLVLGDKQLNKVRGKIIALHSQVITQFCDFTGAQRSMRQRLIKKAKTTGDRLGML 153          
BLAST of EWM23526.1 vs. NCBI_GenBank
Match: gi|676389571|ref|XP_009038064.1| (hypothetical protein AURANDRAFT_27980 [Aureococcus anophagefferens] >gi|323451572|gb|EGB07449.1| hypothetical protein AURANDRAFT_27980 [Aureococcus anophagefferens])

HSP 1 Score: 101.293 bits (251), Expect = 7.867e-26
Identity = 48/71 (67.61%), Postives = 56/71 (78.87%), Query Frame = 0
Query:   58 GKVAKFGFFSPAVIVAKIVLGEKKLNKVRGKAISLHSQAITEFCTFVGAQGKTRNRLIKKAKTNGDELGFL 128
            G +AKFG FSPAV   KI+LG+K L+++RGK ISLHSQAI EFC FVGA  KT+  L+KKAK NGD LGFL
Sbjct:    2 GSMAKFGIFSPAVYAGKILLGDKGLDQIRGKGISLHSQAINEFCIFVGASTKTKGLLVKKAKNNGDTLGFL 72          
BLAST of EWM23526.1 vs. NCBI_GenBank
Match: gi|1072231024|gb|OEU15757.1| (hypothetical protein FRACYDRAFT_209197 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 99.3673 bits (246), Expect = 2.633e-24
Identity = 56/108 (51.85%), Postives = 70/108 (64.81%), Query Frame = 0
Query:   22 SSHAFFMAAPLRPPASTPAPYGLPRGRQQGAMSM-MGGKVAKFGFFSPAVIVAKIVLGEKKLNKVRGKAISLHSQAITEFCTFVGAQGKTRNRLIKKAKTNGDELGFL 128
            S  +F ++      A+T AP       + G  S+ MGGK +KFG FSPAV  AK+VLG  +LNK+RGK IS+HSQ I EFC ++GA    R +LIKKAK NGD LGFL
Sbjct:   29 SGSSFLISQRSSATATTAAPV------RTGVSSLHMGGKKSKFGVFSPAVYGAKVVLGTARLNKIRGKGISIHSQTIGEFCQWIGAY-HLRTKLIKKAKVNGDILGFL 129          
BLAST of EWM23526.1 vs. NCBI_GenBank
Match: gi|219115826|ref|XP_002178708.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409475|gb|EEC49406.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 98.9821 bits (245), Expect = 4.299e-24
Identity = 51/78 (65.38%), Postives = 57/78 (73.08%), Query Frame = 0
Query:   51 GAMSMMGGKVAKFGFFSPAVIVAKIVLGEKKLNKVRGKAISLHSQAITEFCTFVGAQGKTRNRLIKKAKTNGDELGFL 128
            G  +M  G  AKFG FSPAV  AK+VLG+ KLNK+RGKAISLHSQ I EFC + GA    R +LIKKAK NGD LGFL
Sbjct:   55 GVSNMRMGSQAKFGVFSPAVYAAKVVLGQDKLNKIRGKAISLHSQYIGEFCEWAGAY-HLRTKLIKKAKVNGDTLGFL 131          
BLAST of EWM23526.1 vs. NCBI_GenBank
Match: gi|223999569|ref|XP_002289457.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974665|gb|EED92994.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 98.5969 bits (244), Expect = 4.460e-24
Identity = 56/96 (58.33%), Postives = 62/96 (64.58%), Query Frame = 0
Query:   33 RPPASTPAPYGLPRGRQQGAMSMMGGKVAKFGFFSPAVIVAKIVLGEKKLNKVRGKAISLHSQAITEFCTFVGAQGKTRNRLIKKAKTNGDELGFL 128
            RP A+ P         +    S+  G  AKFG FSPAV VAKI LG  +LNK+RGKAISLHSQ I EFC + GA    R RLIKKAKTNGD LGFL
Sbjct:   41 RPRAAAPVA-------RTSKTSLQMGSQAKFGIFSPAVYVAKIGLGNDRLNKIRGKAISLHSQYIGEFCEWAGAY-HLRTRLIKKAKTNGDTLGFL 128          
BLAST of EWM23526.1 vs. NCBI_GenBank
Match: gi|255079358|ref|XP_002503259.1| (predicted protein [Micromonas commoda] >gi|226518525|gb|ACO64517.1| predicted protein [Micromonas commoda])

HSP 1 Score: 96.6709 bits (239), Expect = 2.678e-23
Identity = 50/106 (47.17%), Postives = 72/106 (67.92%), Query Frame = 0
Query:   26 FFMAAPL--RPPASTPAPYGLPRGR-QQGAMSMMGGKVAKFGFFSPAVIVAKIVLGEKKLNKVRGKAISLHSQAITEFCTFVGAQGKTRNRLIKKAKTNGDELGFL 128
            F  +AP+  R  A+ PA    PR R ++GA+ ++ G   + G F+P V+VA+ ++G K+ N++RGKAI+LHSQ IT+FC  +GA GK R  LI+ AK NG +LGFL
Sbjct:   20 FKQSAPMGARVAAAVPAQ---PRARTERGALKVVAGNDYEGGLFAPIVVVARNIIGVKRFNQIRGKAIALHSQVITDFCKEIGADGKVRQNLIRTAKQNGGKLGFL 122          
BLAST of EWM23526.1 vs. NCBI_GenBank
Match: gi|303283974|ref|XP_003061278.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226457629|gb|EEH54928.1| predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 93.9745 bits (232), Expect = 1.409e-22
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 0
Query:   36 ASTPAPYGLPRGRQQGAMSMMGGKVAKFGFFSPAVIVAKIVLGEKKLNKVRGKAISLHSQAITEFCTFVGAQGKTRNRLIKKAKTNGDELGFL 128
            A+TPA     R   +G++ ++ G   + G F+P V+VA+ V+G K+ N++RGKAI+LHSQ ITEFC  +GA GK R  LI+ AK NG +LGFL
Sbjct:    7 ATTPASR---RATSRGSLRVVAGNDYEGGLFAPIVVVARDVIGVKRFNQIRGKAIALHSQVITEFCKEIGADGKVRQNLIRTAKQNGGKLGFL 96          
BLAST of EWM23526.1 vs. NCBI_GenBank
Match: gi|545702229|ref|XP_005703445.1| (electron carrier protein (proton gradient regulation 5) isoform 1 [Galdieria sulphuraria] >gi|452819874|gb|EME26925.1| electron carrier protein (proton gradient regulation 5) isoform 1 [Galdieria sulphuraria])

HSP 1 Score: 93.5893 bits (231), Expect = 4.198e-22
Identity = 47/97 (48.45%), Postives = 64/97 (65.98%), Query Frame = 0
Query:   35 PASTPAPYGLPRGR---QQGAMSMMGGKVAKFGFFSPAVIVAKIVLGEKKLNKVRGKAISLHSQAITEFCTFVGAQGKTRNRLIKKAKTNGDELGFL 128
            P +     G+  GR   +Q A+ +  GKV+ FG F+P V V + VLG+ + NK+RG+AI+LHSQ ITEFC +VG   + R  LI+ AKTNG +LGFL
Sbjct:   32 PHTLRVNKGILVGRRRIKQSAIEVYMGKVSNFGPFTPVVYVTRWVLGKDRFNKIRGRAIALHSQVITEFCKYVGMDARLRQGLIRLAKTNGSKLGFL 128          
The following BLAST results are available for this feature:
BLAST of EWM23526.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104628|gb|EWM23526.1|1.348e-88100.00hypothetical protein Naga_100940g3 [Nannochloropsi... [more]
gi|298712733|emb|CBJ33332.1|2.681e-2744.44proton gradient regulation [Ectocarpus siliculosus... [more]
gi|873239004|emb|CEL94740.1|3.008e-2669.01unnamed protein product [Vitrella brassicaformis C... [more]
gi|676389571|ref|XP_009038064.1|7.867e-2667.61hypothetical protein AURANDRAFT_27980 [Aureococcus... [more]
gi|1072231024|gb|OEU15757.1|2.633e-2451.85hypothetical protein FRACYDRAFT_209197 [Fragilario... [more]
gi|219115826|ref|XP_002178708.1|4.299e-2465.38predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|223999569|ref|XP_002289457.1|4.460e-2458.33predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|255079358|ref|XP_002503259.1|2.678e-2347.17predicted protein [Micromonas commoda] >gi|2265185... [more]
gi|303283974|ref|XP_003061278.1|1.409e-2249.46predicted protein [Micromonas pusilla CCMP1545] >g... [more]
gi|545702229|ref|XP_005703445.1|4.198e-2248.45electron carrier protein (proton gradient regulati... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7163rna7163Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications