rna7162, rna7162 (mRNA) Nannochloropsis gaditana

Overview
Namerna7162
Unique Namerna7162
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length510
Alignment locationCM002470.1:593989..594351 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_103433g1.5892.mrna
Orig protein idgnl|cribi|Naga_103433g1.5892
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:593989..594351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103433g1gene6924Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7162rna7162-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23528.1cds7145Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7162 ID=rna7162|Name=rna7162|organism=Nannochloropsis gaditana|type=mRNA|length=510bp
ATGTGCTGCAGTGGCCCTACCGAGTGTAGCAGTCGTGGCTGCAATGAACA
GATCGATATCACGAACAGTAATAATCGGAAGACGACAGAGCTAGTCTTTG
CGCATACAGGTACAAAAGGGCATTACACCACTGGCGTCAAAGGCATTGGC
TTTCTGGCCTTCGTCTTCGTTTCGCGCGTCATTAGCATGTCTCGTCCGCC
CCCCAGCCCAGCTCTCTGGGCCCCACCTCGATGGATGGGCCTCCTGCTCC
TTTTCACGTTGTGCACCGCAGTCTGGCTCATGCTGTACTCAGACCCTTTG
CAGAGCTTCCACTTCACACAACCCGTGACGGACGTACTTGAGACGTTTCC
CCTCTGGATTCTGGTTTCGCTGGGCGCGTATGCGCTTGGAAGTATAGGTC
TCAGCCTTATGTGTTTTAATACGTGTCCTGAGGCTGTTGTGGCGCTCTCC
GAGGATATAAGACAGGCAAAGGCGGATCTATGGGGAAAAGGCTTCGATAT
AGACCATTGA
back to top

protein sequence of rna7162

>rna7162-protein ID=rna7162-protein|Name=rna7162|organism=Nannochloropsis gaditana|type=polypeptide|length=120bp
MGAGMNTQELYRIAISYKTKLGPFATPRILNEYLKAVFRAPDLSSHVRPP
SLPPFLSLSIYIYICISLSIYMYVYRYRPLLPCAISFPPSLFLSLSIYLS
SLPIYLSIYIYIYIYIYIYI
back to top

mRNA from alignment at CM002470.1:593989..594351+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7162 ID=rna7162|Name=rna7162|organism=Nannochloropsis gaditana|type=mRNA|length=363bp|location=Sequence derived from alignment at CM002470.1:593989..594351+ (Nannochloropsis gaditana)
agATGGGCGCAGGCATGAACACGCAGGAGCTCTACCGCATCGCCATCTCC
TACAAGACCAAGCTGGGCCCCTTTGCCACCCCCCGGATTCTCAACGAGTA
TTTGAAAGCCGTCTTTCGCGCCCccgacctctcctcccatgtgcgtcctc
cttccctccctccctttctctctctatctatatatatatatatatgtata
tctCTCTctatatatatgtatgtatATAGATATagacctctcctcccatg
TGCgatctccttcccaccctcactttttctctctctatctatctatctat
ctagTCTACccatctatctatctatatatatatatatatatatatatata
tatatatatatat
back to top

Coding sequence (CDS) from alignment at CM002470.1:593989..594351+

>rna7162 ID=rna7162|Name=rna7162|organism=Nannochloropsis gaditana|type=CDS|length=361bp|location=Sequence derived from alignment at CM002470.1:593989..594351+ (Nannochloropsis gaditana)
ATGGGCGCAGGCATGAACACGCAGGAGCTCTACCGCATCGCCATCTCCTA
CAAGACCAAGCTGGGCCCCTTTGCCACCCCCCGGATTCTCAACGAGTATT
TGAAAGCCGTCTTTCGCGCCCccgacctctcctcccatgtgcgtcctcct
tccctccctccctttctctctctatctatatatatatatatatgtatatc
tCTCTctatatatatgtatgtatATAGATATagacctctcctcccatgTG
Cgatctccttcccaccctcactttttctctctctatctatctatctatct
agTCTACccatctatctatctatatatatatatatatatatatatatata
tatatatatat
back to top
Synonyms
Publications