rna7157, rna7157 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7157
Unique Name	rna7157
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1047
Alignment location	CM002470.1:583015..587159 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100416g5.4404.mrna
Orig protein id	gnl\|cribi\|Naga_100416g5.4404
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:583015..587159 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100416g5	gene6919	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7157	rna7157-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23535.1	cds7140	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:583015..587159+
coding sequence from alignment at CM002470.1:583015..587159+

mRNA sequence

>rna7157 ID=rna7157|Name=rna7157|organism=Nannochloropsis gaditana|type=mRNA|length=1047bp
TGGAATAAAACTTACACCTGACGTGTAGACTCTCGCTGCTGTTCCTTCAC
CCTCCTGCTTGAAAAACCTTTTTCTTCCTAATTACTGTTTCTCACCGCAC
GCCAAGCCCGATTCACCCTCTAATCAATGAGTAAATCCTCTGCACATGGT
ATTCGTGCCTATGGATAGCCTATTTCACAAACGGGGTTTACATCGCATAC
ACTTTCCACACGCTCTAACACGACTTCTCATTCCCTTCCTCGAACGCAGA
CAGGGACTCTTTTGTTTTAATAGGAGCATGACAAACATCTGCATCGGACC
GCTTTGTATTCCCCTCCAAGCCCTCGTCCCCTTCCTTTTCATTCTCTTCC
GGATTGGCGTGGCATGGTTCAAAACGAACGTCCTCAAGACGCTCTCCCCC
GAGGAGAAGGCGCTTGCCGAGTTGCCACCGCCCCCTGCTGTGGTCGAACG
CAAGTGGGTCGACCCCTCCATTGTTCACATCACTGACGCTGCACATTTGG
AAAGGATTAAAAGGGAGGCGATGGGAGCTGGTGTACCGGTTGTGATCGAT
TTTACGGCGGGCTGGTGTGGACCTTGCCGGACTATAGCGCCTTTATTTGA
GGAGTTGAGTCAGCAATATGATGCCTGTTTCGTGAAGGTGGATATTGACG
AAGCCGACGACGTTGCGCTTACCTACAAAGTCCGGTCCATGCCGACCTTC
GTCTTTCTGAGGATAGTGGGGGATCAAATCGAAGAAGTGCGGTTTTCAGG
GTGCAACAAAATCAAGCTTGAAGGGTTGGTGAAGGCGATGTGTGCCGCGG
TGGTGAAAGGAGAAGTCAGGGAGACGAACGAGGAGAACAAGAAGAAGAAG
TAGTCAGAAAGGAAAGACTGTGGTGGAAGAATTGACAGAATGTGATCTTA
AGGAGCGGCTGGAGGGAAAAGTACACTGGCGTGCGTGTTGAAATTTGCTT
GTTTTTCTTTCCTCCTGCTTCCTCCCTCTCTTTCACCTTCTCTCCCCACA
AGGCAGCTTCAACGACGCTGCTGGAAAAGTCCGCATCATGACCTTGA

protein sequence of rna7157

>rna7157-protein ID=rna7157-protein|Name=rna7157|organism=Nannochloropsis gaditana|type=polypeptide|length=356bp
MDKPSTSLHLAIPDPEEAAFLPVDVHVVPKRASHLPTSSHTSSTNGALAF
GSVHPPRYLRAPKGEIDYASAMPDEVLHRILTFVDIDTGVASTMSSQRWR
PLFDERICQAHCERIYLDQAHVKRLNPARFQGSWKAMLQTRPRVRTNGFY
FLLSSYIKKPIKDMWTEITPGTILEVRYYRYLRFLPGGRLVYALLYLPPP
EAVSLFKEYEAHVSNLPPSTLTSTSSSSALRGWGPPRRDRIRENGRTASI
NTTGNPPISANSKKKELNEGLFWIHKGAVICEIQTPYSRIHFQFKISARE
GGLEGGREGGHEGGRGNFTALMMEEHTSVALNDSTGTPIPHKPAYAPLLF
YKVPVW

mRNA from alignment at CM002470.1:583015..587159+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7157 ID=rna7157|Name=rna7157|organism=Nannochloropsis gaditana|type=mRNA|length=4145bp|location=Sequence derived from alignment at CM002470.1:583015..587159+ (Nannochloropsis gaditana)
TTTCATCTTACATCGTGACGAATAGGACTCTTAGGTTTTGTGCGGGCCCG
GCGCTGCTTTCTGAGGATAGGAGGATCTCAGTGTAGTAGGTATCAATTGA
TCTAAGGGGATCGGCCAAGCGATTTTTACACTTTACCCCGCTTGAACACG
CACACTTAACGTCATACATCGCCCCTTCATGGACAAGCCGTCAACCTCTC
TCCATCTTGCCATCCCGGACCCCGAAGAAgccgctttccttcccgtggAT
GTTCACGTGGTACCCAAACGCGCTTCGCATCTGCCGACTTCCTCCCATAC
CTCGAGTACCAATGGGGCCCTGGCATTCGGCTCCGTCCATCCCCCACGGT
ACTTGCGTGCACCAAAAGGAGAAATCGACTATGCATCCGCCATGCCGGAC
GAGGTCCTGCACCGGATCCTCACCTTTGTCGATATAGACACAGGCGTGGC
TAGCACGATGTCGTCTCAACGGTGGCGGCCTTTGTTCGATGAACGGATCT
GCCAAGCCCACTGCGAACGCATTTACCTAGACCAGGTAAGATGTTCACGT
TGAATAGGCTGCACGTAGGGGAGCCCGTTGTAATGTTGGGCGTTTGCGAT
GGTCAAGCGTGtttggagaaaagggaggaaggggaaaaaagaatggACGG
AAGGAAAGTCTTTTACACGTGGACCAAgcaccctctcccaccatAGACCG
TCGTACGAGTGTAGACACACTGacccctcctgtctcctGTTCTTGCGAAA
CCCTCAGGCCCATGTAAAGCGACTGAACCCTGCGCGTTTCCAAGGGAGTT
GGAAAGCCATGCTCCAAACACGGCCCCGCGTCAGGACGAATGGattctac
ttcctcctctccagcTACATTAAAAAACCTATCAAGGTCAGTGGTGAAGT
GGATGCATGACTCTCTGCCTGAATAATGATTTTGCTTGATTTCGGCATGC
CAGAGCCCTCTACATgtcgtctcccccttcctccctcccaacctggccct
tctttcttccatcctttctccttgggTACCGCTCAGGACATGTGGACAGA
AATCACTCCAGGCACCATCTTGGAAGTCCGTTACTACCGTTACCTCCGCT
TTCTACCGGGCGGTCGACTAGTCTACGCACTCCtctaccttcctcctccc
gaagCAGTGAGTCTCTTCAAGGAATACGAGGCGCACGTatccaacctccc
tccctctaccttgacttccacttcctcttcttcggctTTGCGGGGCTGGG
GCccgccaaggagggacagaatCAGAGAAAATGGTCGTACCGCAAGCATC
AACACCACGGGGAACCCTCCGATCAGCGCCAAtagcaagaagaaagagtT
GAATGAAGGTCTTTTCTGGATTCACAAAGGCGCAGTTATCTGTGAGATAC
AAACTCCGTATTCCCGCATCCATTTCCAGTTCAAAATttcggcgagggag
gggggactcgaaggagggagggagggaggacacgagggaggaaggggaaa
ttTTACCGCGTTGATGATGGAAGAGCATACGAGTGTCGCACTCAATGACT
CAACGGGAACACCCATACCGCATAAGCCCGCGTATGCTCCTTTGTTGTTT
TACAAGGTCCCCGTGTGGTAAGGGAATGTACAGAAGGTGGGGTGCACGGA
GGAAAGGCCTGTAGATTGAACACTCGTAACCAATGAGTTATTGTGCAGGT
CTCTATGTACCAAACATTGAGATATCATGATGCAGCGCCTATGTGGCGAG
AGCTTTCGCAGAAACCTCCATGATGTAAAATTTAAGAAATATGTGCAACA
ATACTGAACAATGGGAGGAACAGTATACCACATTGCGTCGCGAATGCGCA
GTAACGTTTTCCGCCGGTTTCATGACTGATGTAATTCATTTCACCGTTAG
AAGTGAGGTTTCCATCTGGCCGATGCGCGTTCTGAAGTTTTTACGACAGC
CAGCGTGCCTCATCTCCAAAGTTGAAAATTTAAAATTCAAAAATCCTCGC
CATTGCCACGCAAACGGCCGCTAGGCAACGGTGCACGAAAACCCtgcttt
ttcaaaaaaacTTAATAGCAAGCCATGTGCTAGCACACAATAATATAAAT
ATGCTTAAATGATTAATCCTTTTAGAAAAAGTTTTGCCCATAGGACTGCT
CACACGCTTTTATCGCAAGTTTGCTGTGGGAATATTCTCTTCCCCGTACA
TGAGACTACTCAATGAGAAACCCCTCAATTTAAAGTAAGAGCAATAACGT
TTGTCAATAATAGCAAGTATTGCTTATGTTGAACCAGTATTCTCAGATCT
TATTGATCCCAAATTATCATGTACGGATGTGAAGTGACCCTGCACATAGC
CGTTTGGGCCCTTGTTTTGCGCAGATACGACAAAGAAGTCTGCAAGGAGC
TAAGTTGACGGACTGCGAGGAAGACAATTGTAGGAAAGATAGGGCCAAGA
GTAAGccactttttttcccttgAGAGGGAAAGCTCATGGCGCCTGCACTA
CACGAGGCTGCGGCACGGTGAGTATTTTACTCTTTCGATGACTTCCTCGT
TTGCAATGCAATGCTTATTTTATTTAGACTCCTTTTTGTACCTACGCCAT
CCTTAAGCCTCGATTTCACTTTGCTTTTTCTCCCATTCCTGTTGTTTTTT
GTATCAGGGGAGCCCTTACACTCATACTCCAACAGATCTCTGCATTTCCT
GACCATCTGAACACACGAGACAAGAGAGGGCGGACCCCTCTCATGTATGC
CTGTCAGTGGGGGCATTACCATATCTGTGCCTCATTATTGGATCATGGGG
CACATCTCAACCTCGTCGATCACGGGGGTCGACGCGCTTTATATTGGTCG
TATGCATCCATGGGAGCCAACATTAGAGTCGTGGAGCTCTTACTGGAAAG
GGGGGCAGATTTGAATGAGCCGTGGATGTCTCCAATGTTTTTCTCGTCCG
TATCTCGACAGCAGAATAAgcaaaggagaagaagaagagggtggattGAC
GgaatgagggaagaggcggtcGTTGGAAGGCATGGGGGTGTCGATcgggt
ggatgaggaggaggaagatgcggCAGGAAAAGCAGAATGGCTCGATACCG
ACAGAGACTATGGATTccagggcggtggtgggACGGTGTTGATGCATTCG
Taagcagggggggagagaagcggggaaagaaggggccggggggagaagag
tgCCTATGGTCGTGTGCTTTAATCATGCTTTCCCTTCGCTCGTTCACACC
CTCAAATGCTTCACATCGTTCGAGCTCGACCTTTTTTGCCTCTCATTTTC
GATCGTTCTCTCCTCCTGAGCACAATTTTCCCCAaacttccccctcccct
tccttcctcctcccgtcccgcctcctgcagaGCGGCGCTGGGTCAGGAGG
AGATCGTCCGGCTCCTATTGCGAAAGGGGAAGTGCGAGATTAATGCCCAG
GACGAGCAAGGAAGGACTGCTTTACATCATGCATgtgaacgagggaggga
gggggtggtccGGGCGTTActtgagggaggcgggagggagggcgggaggg
agggcgggagggaggaagggacggggaTCGATGTCACAGTCAAGGACTCA
GGGGGTCGAACGGCCCGGGAGATCGCGGAGATGTGGGGTCACGAAGAATG
CGTGAGGCTTGTGAGTGCCGAAGAGATCATCTACTTTCTGTGTAAGCTTA
GATGGCTGGGTGGGGtaagcgagggagggagggaggacgggaagagaCAG
CCCCAAGTTTTTTATTCgcgggaagacgaggagccAATTCCCCTATGGGA
GAAGAAAACACACACCAGGAGACgacaggggggaaggggggagacgaggg
aggacatgaaCAAACAGGCCGCGGTCCTGCAATTTGTGACAATGCAGcag
gacgacggggagggttTGCCCCGGGAATTGTTCCGAGAGTGGATGGAAAG
ATACATGGACCTGAGGATCCCATTGGGGTTGCAGTGGTGAGaacgggcag
ggaggggagcagggaaagacggggggGCActgaaaggggggagaggagga
ggcttgtgGGCGTCGCCACGGACGGCACgacaaggaaagagaggagagaa
ggggaggcgcggTAGCTGAcacgatgaagaggaaaggtatatata

Coding sequence (CDS) from alignment at CM002470.1:583015..587159+

>rna7157 ID=rna7157|Name=rna7157|organism=Nannochloropsis gaditana|type=CDS|length=3213bp|location=Sequence derived from alignment at CM002470.1:583015..587159+ (Nannochloropsis gaditana)
ATGGACAAGCCGTCAACCTCTCTCCATCTTGCCATCCCGGACCCCGAAGA
AgccgctttccttcccgtggATGTTCACGTGGTACCCAAACGCGCTTCGC
ATCTGCCGACTTCCTCCCATACCTCGAGTACCAATGGGGCCCTGGCATTC
GGCTCCGTCCATCCCCCACGGTACTTGCGTGCACCAAAAGGAGAAATCGA
CTATGCATCCGCCATGCCGGACGAGGTCCTGCACCGGATCCTCACCTTTG
TCGATATAGACACAGGCGTGGCTAGCACGATGTCGTCTCAACGGTGGCGG
CCTTTGTTCGATGAACGGATCTGCCAAGCCCACTGCGAACGCATTTACCT
AGACCAGGCCCATGTAAAGCGACTGAACCCTGCGCGTTTCCAAGGGAGTT
GGAAAGCCATGCTCCAAACACGGCCCCGCGTCAGGACGAATGGattctac
ttcctcctctccagcTACATTAAAAAACCTATCAAGGACATGTGGACAGA
AATCACTCCAGGCACCATCTTGGAAGTCCGTTACTACCGTTACCTCCGCT
TTCTACCGGGCGGTCGACTAGTCTACGCACTCCtctaccttcctcctccc
gaagCAGTGAGTCTCTTCAAGGAATACGAGGCGCACGTatccaacctccc
tccctctaccttgacttccacttcctcttcttcggctTTGCGGGGCTGGG
GCccgccaaggagggacagaatCAGAGAAAATGGTCGTACCGCAAGCATC
AACACCACGGGGAACCCTCCGATCAGCGCCAAtagcaagaagaaagagtT
GAATGAAGGTCTTTTCTGGATTCACAAAGGCGCAGTTATCTGTGAGATAC
AAACTCCGTATTCCCGCATCCATTTCCAGTTCAAAATttcggcgagggag
gggggactcgaaggagggagggagggaggacacgagggaggaaggggaaa
ttTTACCGCGTTGATGATGGAAGAGCATACGAGTGTCGCACTCAATGACT
CAACGGGAACACCCATACCGCATAAGCCCGCGTATGCTCCTTTGTTGTTT
TACAAGGTCCCCGTGTGGTAAATGGACAAGCCGTCAACCTCTCTCCATCT
TGCCATCCCGGACCCCGAAGAAgccgctttccttcccgtggATGTTCACG
TGGTACCCAAACGCGCTTCGCATCTGCCGACTTCCTCCCATACCTCGAGT
ACCAATGGGGCCCTGGCATTCGGCTCCGTCCATCCCCCACGGTACTTGCG
TGCACCAAAAGGAGAAATCGACTATGCATCCGCCATGCCGGACGAGGTCC
TGCACCGGATCCTCACCTTTGTCGATATAGACACAGGCGTGGCTAGCACG
ATGTCGTCTCAACGGTGGCGGCCTTTGTTCGATGAACGGATCTGCCAAGC
CCACTGCGAACGCATTTACCTAGACCAGGCCCATGTAAAGCGACTGAACC
CTGCGCGTTTCCAAGGGAGTTGGAAAGCCATGCTCCAAACACGGCCCCGC
GTCAGGACGAATGGattctacttcctcctctccagcTACATTAAAAAACC
TATCAAGGACATGTGGACAGAAATCACTCCAGGCACCATCTTGGAAGTCC
GTTACTACCGTTACCTCCGCTTTCTACCGGGCGGTCGACTAGTCTACGCA
CTCCtctaccttcctcctcccgaagCAGTGAGTCTCTTCAAGGAATACGA
GGCGCACGTatccaacctccctccctctaccttgacttccacttcctctt
cttcggctTTGCGGGGCTGGGGCccgccaaggagggacagaatCAGAGAA
AATGGTCGTACCGCAAGCATCAACACCACGGGGAACCCTCCGATCAGCGC
CAAtagcaagaagaaagagtTGAATGAAGGTCTTTTCTGGATTCACAAAG
GCGCAGTTATCTGTGAGATACAAACTCCGTATTCCCGCATCCATTTCCAG
TTCAAAATttcggcgagggaggggggactcgaaggagggagggagggagg
acacgagggaggaaggggaaattTTACCGCGTTGATGATGGAAGAGCATA
CGAGTGTCGCACTCAATGACTCAACGGGAACACCCATACCGCATAAGCCC
GCGTATGCTCCTTTGTTGTTTTACAAGGTCCCCGTGTGGTAAATGGACAA
GCCGTCAACCTCTCTCCATCTTGCCATCCCGGACCCCGAAGAAgccgctt
tccttcccgtggATGTTCACGTGGTACCCAAACGCGCTTCGCATCTGCCG
ACTTCCTCCCATACCTCGAGTACCAATGGGGCCCTGGCATTCGGCTCCGT
CCATCCCCCACGGTACTTGCGTGCACCAAAAGGAGAAATCGACTATGCAT
CCGCCATGCCGGACGAGGTCCTGCACCGGATCCTCACCTTTGTCGATATA
GACACAGGCGTGGCTAGCACGATGTCGTCTCAACGGTGGCGGCCTTTGTT
CGATGAACGGATCTGCCAAGCCCACTGCGAACGCATTTACCTAGACCAGG
CCCATGTAAAGCGACTGAACCCTGCGCGTTTCCAAGGGAGTTGGAAAGCC
ATGCTCCAAACACGGCCCCGCGTCAGGACGAATGGattctacttcctcct
ctccagcTACATTAAAAAACCTATCAAGGACATGTGGACAGAAATCACTC
CAGGCACCATCTTGGAAGTCCGTTACTACCGTTACCTCCGCTTTCTACCG
GGCGGTCGACTAGTCTACGCACTCCtctaccttcctcctcccgaagCAGT
GAGTCTCTTCAAGGAATACGAGGCGCACGTatccaacctccctccctcta
ccttgacttccacttcctcttcttcggctTTGCGGGGCTGGGGCccgcca
aggagggacagaatCAGAGAAAATGGTCGTACCGCAAGCATCAACACCAC
GGGGAACCCTCCGATCAGCGCCAAtagcaagaagaaagagtTGAATGAAG
GTCTTTTCTGGATTCACAAAGGCGCAGTTATCTGTGAGATACAAACTCCG
TATTCCCGCATCCATTTCCAGTTCAAAATttcggcgagggaggggggact
cgaaggagggagggagggaggacacgagggaggaaggggaaattTTACCG
CGTTGATGATGGAAGAGCATACGAGTGTCGCACTCAATGACTCAACGGGA
ACACCCATACCGCATAAGCCCGCGTATGCTCCTTTGTTGTTTTACAAGGT
CCCCGTGTGGTAA

Synonyms

Publications