EWM23535.1, cds7140 (CDS) Nannochloropsis gaditana

Overview
NameEWM23535.1
Unique Namecds7140
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:583193..583549 +
Alignment locationCM002470.1:583772..583900 +
Alignment locationCM002470.1:584051..584635 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23535.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100416g5.4404.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:583193..583549 +
CM002470.1supercontigCM002470.1:583772..583900 +
CM002470.1supercontigCM002470.1:584051..584635 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
Homology
BLAST of EWM23535.1 vs. NCBI_GenBank
Match: gi|585104643|gb|EWM23535.1| (hypothetical protein Naga_100416g5 [Nannochloropsis gaditana])

HSP 1 Score: 737.258 bits (1902), Expect = 0.000e+0
Identity = 356/356 (100.00%), Postives = 356/356 (100.00%), Query Frame = 0
Query:    1 MDKPSTSLHLAIPDPEEAAFLPVDVHVVPKRASHLPTSSHTSSTNGALAFGSVHPPRYLRAPKGEIDYASAMPDEVLHRILTFVDIDTGVASTMSSQRWRPLFDERICQAHCERIYLDQAHVKRLNPARFQGSWKAMLQTRPRVRTNGFYFLLSSYIKKPIKDMWTEITPGTILEVRYYRYLRFLPGGRLVYALLYLPPPEAVSLFKEYEAHVSNLPPSTLTSTSSSSALRGWGPPRRDRIRENGRTASINTTGNPPISANSKKKELNEGLFWIHKGAVICEIQTPYSRIHFQFKISAREGGLEGGREGGHEGGRGNFTALMMEEHTSVALNDSTGTPIPHKPAYAPLLFYKVPVW 356
            MDKPSTSLHLAIPDPEEAAFLPVDVHVVPKRASHLPTSSHTSSTNGALAFGSVHPPRYLRAPKGEIDYASAMPDEVLHRILTFVDIDTGVASTMSSQRWRPLFDERICQAHCERIYLDQAHVKRLNPARFQGSWKAMLQTRPRVRTNGFYFLLSSYIKKPIKDMWTEITPGTILEVRYYRYLRFLPGGRLVYALLYLPPPEAVSLFKEYEAHVSNLPPSTLTSTSSSSALRGWGPPRRDRIRENGRTASINTTGNPPISANSKKKELNEGLFWIHKGAVICEIQTPYSRIHFQFKISAREGGLEGGREGGHEGGRGNFTALMMEEHTSVALNDSTGTPIPHKPAYAPLLFYKVPVW
Sbjct:    1 MDKPSTSLHLAIPDPEEAAFLPVDVHVVPKRASHLPTSSHTSSTNGALAFGSVHPPRYLRAPKGEIDYASAMPDEVLHRILTFVDIDTGVASTMSSQRWRPLFDERICQAHCERIYLDQAHVKRLNPARFQGSWKAMLQTRPRVRTNGFYFLLSSYIKKPIKDMWTEITPGTILEVRYYRYLRFLPGGRLVYALLYLPPPEAVSLFKEYEAHVSNLPPSTLTSTSSSSALRGWGPPRRDRIRENGRTASINTTGNPPISANSKKKELNEGLFWIHKGAVICEIQTPYSRIHFQFKISAREGGLEGGREGGHEGGRGNFTALMMEEHTSVALNDSTGTPIPHKPAYAPLLFYKVPVW 356          
BLAST of EWM23535.1 vs. NCBI_GenBank
Match: gi|553181432|ref|XP_005853565.1| (hypothetical protein NGA_0494800 [Nannochloropsis gaditana CCMP526] >gi|422295494|gb|EKU22793.1| hypothetical protein NGA_0494800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 542.732 bits (1397), Expect = 0.000e+0
Identity = 262/263 (99.62%), Postives = 262/263 (99.62%), Query Frame = 0
Query:   94 MSSQRWRPLFDERICQAHCERIYLDQAHVKRLNPARFQGSWKAMLQTRPRVRTNGFYFLLSSYIKKPIKDMWTEITPGTILEVRYYRYLRFLPGGRLVYALLYLPPPEAVSLFKEYEAHVSNLPPSTLTSTSSSSALRGWGPPRRDRIRENGRTASINTTGNPPISANSKKKELNEGLFWIHKGAVICEIQTPYSRIHFQFKISAREGGLEGGREGGHEGGRGNFTALMMEEHTSVALNDSTGTPIPHKPAYAPLLFYKVPVW 356
            MSSQRWRPLFDERICQAHCERIYLDQAHVKRLNPARFQGSWKAMLQTRPRVRTNGFYFLLSSYIKKPIK MWTEITPGTILEVRYYRYLRFLPGGRLVYALLYLPPPEAVSLFKEYEAHVSNLPPSTLTSTSSSSALRGWGPPRRDRIRENGRTASINTTGNPPISANSKKKELNEGLFWIHKGAVICEIQTPYSRIHFQFKISAREGGLEGGREGGHEGGRGNFTALMMEEHTSVALNDSTGTPIPHKPAYAPLLFYKVPVW
Sbjct:    1 MSSQRWRPLFDERICQAHCERIYLDQAHVKRLNPARFQGSWKAMLQTRPRVRTNGFYFLLSSYIKKPIK-MWTEITPGTILEVRYYRYLRFLPGGRLVYALLYLPPPEAVSLFKEYEAHVSNLPPSTLTSTSSSSALRGWGPPRRDRIRENGRTASINTTGNPPISANSKKKELNEGLFWIHKGAVICEIQTPYSRIHFQFKISAREGGLEGGREGGHEGGRGNFTALMMEEHTSVALNDSTGTPIPHKPAYAPLLFYKVPVW 262          
BLAST of EWM23535.1 vs. NCBI_GenBank
Match: gi|299471422|emb|CBN79375.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 120.168 bits (300), Expect = 8.059e-27
Identity = 58/142 (40.85%), Postives = 83/142 (58.45%), Query Frame = 0
Query:   67 DYASAMPDEVLHRILTFVDIDTGVASTMSSQRWRPLFDERICQAHCERIYLDQAHVKRLNPARFQGSWKAMLQTRPRVRTNGFYFLLSSYIKKPIKDMWTEITPGTILEVRYYRYLRFLPGGRLVYALLYLPPPEAVSLFKE 208
            D    MPD++LHR + F++ +        S RW     E + +  C R YL Q+  K LN  R++ SW+ M + RPR+R  G Y L ++Y KKP++DM TE TPG IL V YYRY +F   GR+ YAL + PP + V + ++
Sbjct:  294 DIVLTMPDDILHRTMLFLNPEDIFECRAVSSRWSFPGHENVYEGLCRRTYLAQSAKKMLNVKRWR-SWQRMFKFRPRLRDTGLYSLKTTYFKKPVRDMSTEWTPGKILRVTYYRYFKFFGDGRVAYALTHEPPKDFVRMLQD 434          
BLAST of EWM23535.1 vs. NCBI_GenBank
Match: gi|325179911|emb|CCA14313.1| (Fbox protein putative [Albugo laibachii Nc14])

HSP 1 Score: 108.612 bits (270), Expect = 3.565e-24
Identity = 60/142 (42.25%), Postives = 87/142 (61.27%), Query Frame = 0
Query:   72 MPDEVLHRILTFVDIDTGVASTMSSQRWRPLF-DERICQAHCERIYLDQAHVKRLNPARFQ----GSWKAMLQTRPRVRTNGFYFLLSSYIKKPIKDMWT-EITPGTILEVRYYRYLRFLPGGRLVYALLYLPPPEAVSLFK 207
            +P+ ++ +++ F+D DT  +   + + W  +  DE I +  C RI+  Q   K  N  +FQ     +W  ML  RP VR NGFY+L  SY KKP  +MWT E+TPG++L+V YYRY  F   G L+YA+L+ PP EA+S+FK
Sbjct:    5 LPEHLVTQLVLFLDEDTIGSCLCTCKHWNHVLNDETIFKELCRRIFPIQCK-KSANQKQFQLRRCKTWFEMLCRRPHVRYNGFYWLRISYYKKPEWNMWTPEVTPGSVLQVVYYRYFYFQRDGTLLYAMLFKPPKEAISIFK 145          
BLAST of EWM23535.1 vs. NCBI_GenBank
Match: gi|224004852|ref|XP_002296077.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|209586109|gb|ACI64794.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 110.153 bits (274), Expect = 4.688e-23
Identity = 58/145 (40.00%), Postives = 84/145 (57.93%), Query Frame = 0
Query:   70 SAMPDEVLHRILTFVDIDTGVASTMSSQRW-RPLFDERICQAHCERIYLDQAHVKRLNPARFQGSWKAMLQTRPRVRTNG-FYFLLSSYIKKPIKDMWTEITPGTILEVRYYRYLRFLPGGRLVYALLYLPPPEAVSLFKEYEAH 212
              +PDE+LH+  +F+ +D      + S  W R    E + +  CER+YL+Q+  K L+ +RF  S++ ML++RPR+RT G  Y L    ++K  +DMWTEI  G ILE  YYRYL F   GR++YAL +  P E +  F     H
Sbjct:  238 CGLPDEILHKCFSFLPVDDYSPLALVSPHWSRFTRCESLYKTLCERVYLNQSKRKTLHVSRFGNSYRRMLESRPRIRTGGGLYVLKYQEVRKIQRDMWTEIPVGAILESVYYRYLYFFEDGRVMYALTHATPVEMIPRFSRMLLH 382          
BLAST of EWM23535.1 vs. NCBI_GenBank
Match: gi|1210525790|dbj|GAX15396.1| (hypothetical protein FisN_8Lh308 [Fistulifera solaris])

HSP 1 Score: 104.375 bits (259), Expect = 9.160e-22
Identity = 55/130 (42.31%), Postives = 76/130 (58.46%), Query Frame = 0
Query:   72 MPDEVLHRILTFVDIDTGVASTMSSQRWRPLF-DERICQAHCERIYLDQAHVKRLNPARFQGSWKAMLQTRPRVRTNG-FYFLLSSYIKKPIKDMWTEITPGTILEVRYYRYLRFLPGGRLVYALLYLPP 199
            +PD++LHR+  F+ +DT     + S  W+     E   +  CER+YL Q+  + L+ +RF  S++ ML+ RPRVR  G  Y +    IKK  +DMWTEI  G ILE  YYRYL F   GR++YAL    P
Sbjct:  111 LPDDLLHRVFDFLPVDTYATLALVSPHWKSFTRTEAAYRRLCERLYLQQSKKRTLHVSRFGNSYRTMLEKRPRVRAGGGVYVIKYKQIKKIQRDMWTEIPHGAILESIYYRYLYFQEDGRVIYALTTTAP 240          
BLAST of EWM23535.1 vs. NCBI_GenBank
Match: gi|219115343|ref|XP_002178467.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410202|gb|EEC50132.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 104.76 bits (260), Expect = 1.079e-21
Identity = 54/137 (39.42%), Postives = 82/137 (59.85%), Query Frame = 0
Query:   72 MPDEVLHRILTFVDIDTGVASTMSSQRWRPLF-DERICQAHCERIYLDQAHVKRLNPARFQGSWKAMLQTRPRVRTNG-FYFLLSSYIKKPIKDMWTEITPGTILEVRYYRYLRFLPGGRLVYALLYLPPPEAVSLF 206
            +PD++LH++  ++ +D     ++ S  W+     E + +  CER+YL+Q+  + L+ +RF  S++AML+ RPRVR  G  Y L  + +KK  +DMWTEI  G +LE  YYRYL F   GR++YAL    P E    F
Sbjct:  153 IPDDILHKVFEWLPVDAYGTLSLVSPHWKAFTRTEAVYKRLCERLYLNQSKRRALHVSRFGNSYRAMLELRPRVRAGGGIYVLKFARVKKIQRDMWTEIPVGAVLETVYYRYLYFQEDGRVLYALTAASPHEMFRRF 289          
BLAST of EWM23535.1 vs. NCBI_GenBank
Match: gi|1210515337|dbj|GAX25789.1| (hypothetical protein FisN_8Hh308 [Fistulifera solaris])

HSP 1 Score: 104.375 bits (259), Expect = 1.343e-21
Identity = 55/130 (42.31%), Postives = 76/130 (58.46%), Query Frame = 0
Query:   72 MPDEVLHRILTFVDIDTGVASTMSSQRWRPLF-DERICQAHCERIYLDQAHVKRLNPARFQGSWKAMLQTRPRVRTNG-FYFLLSSYIKKPIKDMWTEITPGTILEVRYYRYLRFLPGGRLVYALLYLPP 199
            +PD++LHR+  F+ +DT     + S  W+     E   +  CER+YL Q+  + L+ +RF  S++ ML+ RPRVR  G  Y +    IKK  +DMWTEI  G ILE  YYRYL F   GR++YAL    P
Sbjct:  136 LPDDLLHRVFDFLPVDTYATLALVSPHWKSFTRTEAAYRRLCERLYLQQSKKRTLHVSRFGNSYRTMLEKRPRVRAGGGVYVIKYKQIKKIQRDMWTEIPHGAILESIYYRYLYFQEDGRVIYALTTTAP 265          
BLAST of EWM23535.1 vs. NCBI_GenBank
Match: gi|1072236027|gb|OEU20755.1| (hypothetical protein FRACYDRAFT_259673 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 102.834 bits (255), Expect = 1.971e-21
Identity = 55/131 (41.98%), Postives = 79/131 (60.31%), Query Frame = 0
Query:   73 PDEVLHRILTFVDIDTGVASTMSSQRWRPLF-DERICQAHCERIYLDQAHVKRLNPARFQGSWKAMLQTRPRVRT-NGFYFLLSSYIKKPIKDMWTEITPGTILEVRYYRYLRFLPGGRLVYALLYLPPPE 201
            P E+LHRI +++ +DT     + S  W+     E + +  CER+YL+Q+  ++L+  RF GS++ ML+ RPRVR   G Y +  S IKK  + MWTEI  G +L   YYRYL F   GR++YAL   PP +
Sbjct:   82 PAEILHRIFSWLPVDTYGTMALVSTHWKFFTRTEAVYKRLCERLYLNQSKRRQLHVNRFDGSYRRMLEIRPRVRAAGGCYVMKYSQIKKIERTMWTEIPIGAVLRTEYYRYLYFQEDGRVLYALSCSPPKD 212          
BLAST of EWM23535.1 vs. NCBI_GenBank
Match: gi|397603213|gb|EJK58371.1| (hypothetical protein THAOC_21510 [Thalassiosira oceanica])

HSP 1 Score: 103.605 bits (257), Expect = 7.550e-21
Identity = 73/259 (28.19%), Postives = 112/259 (43.24%), Query Frame = 0
Query:   72 MPDEVLHRILTFVDIDTGVASTMSSQRWRPLF-DERICQAHCERIYLDQAHVKRLNPARFQGSWKAMLQTRPRVRTNG-FYFLLSSYIKKPIKDMWTEITPGTILEVRYYRYLRFLPGGRLVYALLYLPPPEAVSLFKEYEAHVSNLPPSTLTSTSSSSALRGWGPPRRDRIRENGRTASINTTGNPPISANSKKKELNEGLFWIHKGAVICEIQTPYSRIHFQFKISAREGGLEGGREGGHEGGRGNFTALMMEEHTS 328
            +PDE+L +   ++ +D      + S  W+     + + +  CER+YL Q+  K LN A+F  S++ ML+ RPRVRT G  Y L    + +  +DMWTEI  G +LE  YYRYL F   GR++YAL +  P E V  F +   H                   GWG                           SK K    G F I +  +    +  +  + FQ ++      +   +E  +   RG +T++ +E H S
Sbjct:  237 IPDEILEKCFAYLPVDNFANLALVSPHWKRFTRSDAVYKTLCERVYLIQSKRKALNVAKFGNSYRRMLEVRPRVRTGGGLYVLKYQKVIQIQRDMWTEIPVGAVLESIYYRYLYFFEDGRVLYALTHATPGEMVPRFHKMLLH-------------------GWG---------------------------SKDKWGVWGRFSIKREKIRVWAKQDWHEVCFQLRV------IRSNKELHYGDDRGRWTSMELERHMS 443          
The following BLAST results are available for this feature:
BLAST of EWM23535.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104643|gb|EWM23535.1|0.000e+0100.00hypothetical protein Naga_100416g5 [Nannochloropsi... [more]
gi|553181432|ref|XP_005853565.1|0.000e+099.62hypothetical protein NGA_0494800 [Nannochloropsis ... [more]
gi|299471422|emb|CBN79375.1|8.059e-2740.85conserved unknown protein [Ectocarpus siliculosus][more]
gi|325179911|emb|CCA14313.1|3.565e-2442.25Fbox protein putative [Albugo laibachii Nc14][more]
gi|224004852|ref|XP_002296077.1|4.688e-2340.00predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1210525790|dbj|GAX15396.1|9.160e-2242.31hypothetical protein FisN_8Lh308 [Fistulifera sola... [more]
gi|219115343|ref|XP_002178467.1|1.079e-2139.42predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210515337|dbj|GAX25789.1|1.343e-2142.31hypothetical protein FisN_8Hh308 [Fistulifera sola... [more]
gi|1072236027|gb|OEU20755.1|1.971e-2141.98hypothetical protein FRACYDRAFT_259673 [Fragilario... [more]
gi|397603213|gb|EJK58371.1|7.550e-2128.19hypothetical protein THAOC_21510 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7157rna7157Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications