rna7156, rna7156 (mRNA) Nannochloropsis gaditana

Overview
Namerna7156
Unique Namerna7156
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length789
Alignment locationCM002470.1:581591..582781 -

Link to JBrowse

Properties
Property NameValue
ProductThioredoxin
Orig transcript idgnl|cribi|Naga_100416g4.4401.mrna
Orig protein idgnl|cribi|Naga_100416g4.4401
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:581591..582781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100416g4gene6918Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7156rna7156-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23532.1cds7139Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7156 ID=rna7156|Name=rna7156|organism=Nannochloropsis gaditana|type=mRNA|length=789bp
TTGCCTGGTGATTCCACAACAATACGCGCCCGACCTCCTTTCTAACTTTA
CTTATTACTTTCTATTCTTTCCGCATGCTTTTAGGCCACTCGCGTACCCG
ATCTCGTCGTAGCTATCATTATCAATGGATAGTGGTGGCCTATATGAAGA
CTTAGATATTCCCCCTGCGGTGGTAGCTACACAAGAATTGGAAGCGCGCT
TAGATGCCGCCTACTCCCGCATCGCGACGCTGGAACAAAAAGCGGCTCTG
GTAGGAAAAGAATGCGTAACTTTACGGAAGGAAAATGACGTGCTTCGAGT
TAATATCTCATCGCTTTATAAAACGGCCAAGCGGGAATTGGAAAGGAAAG
AGACAGAAGTAATCAAATTGAGAGAACAGGTGCAATCATGGCAGGGAGGA
GGAAGACGAGGAGGGGAAGGTAAAGAAGCACATGGCGATGATACAAGTGG
ATGTGAAAGAGGAGAAGGAGGAAGGGAAGGAGGATGGCAAGAAGACCCAA
TGGGAGAAGAAGGAGTTGGGAGGGACGAAAGGAAGAGAGGGACGCGGGTG
TGGAGATGACACATTGCTTTAAAGTTCGAAAAAGAAAAAAGCCTTCGGGG
CTTGCCGTCACATGGTCTGTTTCTCCCAAGGCTATCATGTCCGCTCTTCA
TTCTCTCAAACTTACAATTCATTAGCAGCATAATGGCTACGTCAGATCAG
CAGAGAGAAAAGCTGAACCTCAAAGGACACCCGGGACAGATCCCGGCGTG
CTCGCCCTGCTCTTACACGCACGTCGCATCAATTTAGGG
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protein sequence of rna7156

>rna7156-protein ID=rna7156-protein|Name=rna7156|organism=Nannochloropsis gaditana|type=polypeptide|length=235bp
MVFVPMDSLFHKRGLHRIHFPHALTRLLIPFLERRQGLFCFNRSMTNICI
GPLCIPLQALVPFLFILFRIGVAWFKTNVLKTLSPEEKALAELPPPPAVV
ERKWVDPSIVHITDAAHLERIKREAMGAGVPVVIDFTAGWCGPCRTIAPL
FEELSQQYDACFVKVDIDEADDVALTYKVRSMPTFVFLRIVGDQIEEVRF
SGCNKIKLEGLVKAMCAAVVKGEVRETNEENKKKK
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mRNA from alignment at CM002470.1:581591..582781-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7156 ID=rna7156|Name=rna7156|organism=Nannochloropsis gaditana|type=mRNA|length=1191bp|location=Sequence derived from alignment at CM002470.1:581591..582781- (Nannochloropsis gaditana)
TGGAATAAAACTTACACCTGACGTGTAGACTCTCGCTGCTGTTCCTTCAC
CCTCCTGCTTGAAAAACCTTTTTCTTCCTAATTACTGTTTCTCACCGCAC
GCCAAGCCCGATTCACCCTCTAATCAATGAGTAAATCCTCTGCACATGGT
ATTCGTGCCTATGGATAGCCTATTTCACAAACGGGGTTTACATCGCATAC
ACTTTCCACACGCTCTAACACGACTTCTCATTCCCTTCCTCGAACGCAGA
CAGGGACTCTTTTGTTTTAATAGGAGCATGACAAACATCTGCATCGGACC
GCTTTGTATTCCCCTCCAAGCCCTCGTCCCCTTCCTTTTCATTCTCTTCC
GGATTGGCGTGGCATGGTTCAAAACGAACGTCCTCAAGACGCTCTCCCCC
GAGGAGAAGGCGCTTGCCGAGTTGCCACCGCCCCCTGCTGTGGTCGAACG
CAAGTGGGTCGACCCCTCCATTGTTCACATCACTGACGCTGCACATTTGG
AAAGGATTAAAAGGGAGGCGATGGGAGCTGGTGTACCGGTTGTGATCGAT
TTTACGGCGGGCTGGTGTGGACCTTGCCGGACTATAGCGCCTTTATTTGA
GGAGTTGAGGTGAGGAAGTGTGAGAAAATTTCGTCCCAAAAACAATGGAA
CGGCCCTCATCCACATTCATATTGCCTATAACACTCTCTGGTGATCCTCT
CACCTATCGTCCGCTTCCACTTCCTGCCTTTCCCTTCACCTCCCTCTTTG
CAGTCAGCAATATGATGCCTGTTTCGTGAAGGTGGATATTGACGAAGCCG
ACGACGTTGCGCTTACCTACAAAGTCCGGTCCATGCCGACCTTCGTCTTT
CTGAGGATAGTGGGGGATCAAATCGAAGAAGTGCGGTTTTCAGGGTGCAA
CAAAATCAAGCTTGAAGGGTTGGTGAAGGCGATGTGTGCCGCGGTGGTGA
AAGGAGAAGTCAGGGAGACGAACGAGGAGAACAAGAAGAAGAAGTAGTCA
GAAAGGAAAGACTGTGGTGGAAGAATTGACAGAATGTGATCTTAAGGAGC
GGCTGGAGGGAAAAGTACACTGGCGTGCGTGTTGAAATTTGCTTGTTTTT
CTTTCCTCCTGCTTCCTCCCTCTCTTTCACCTTCTCTCCCCACAAGGCAG
CTTCAACGACGCTGCTGGAAAAGTCCGCATCATGACCTTGA
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Coding sequence (CDS) from alignment at CM002470.1:581591..582781-

>rna7156 ID=rna7156|Name=rna7156|organism=Nannochloropsis gaditana|type=CDS|length=1416bp|location=Sequence derived from alignment at CM002470.1:581591..582781- (Nannochloropsis gaditana)
TCAGCAATATGATGCCTGTTTCGTGAAGGTGGATATTGACGAAGCCGACG
ACGTTGCGCTTACCTACAAAGTCCGGTCCATGCCGACCTTCGTCTTTCTG
AGGATAGTGGGGGATCAAATCGAAGAAGTGCGGTTTTCAGGGTGCAACAA
AATCAAGCTTGAAGGGTTGGTGAAGGCGATGTGTGCCGCGGTGGTGAAAG
GAGAAGTCAGGGAGACGAACGAGGAGAACAAGAAGAAGAAGTAGATGGTA
TTCGTGCCTATGGATAGCCTATTTCACAAACGGGGTTTACATCGCATACA
CTTTCCACACGCTCTAACACGACTTCTCATTCCCTTCCTCGAACGCAGAC
AGGGACTCTTTTGTTTTAATAGGAGCATGACAAACATCTGCATCGGACCG
CTTTGTATTCCCCTCCAAGCCCTCGTCCCCTTCCTTTTCATTCTCTTCCG
GATTGGCGTGGCATGGTTCAAAACGAACGTCCTCAAGACGCTCTCCCCCG
AGGAGAAGGCGCTTGCCGAGTTGCCACCGCCCCCTGCTGTGGTCGAACGC
AAGTGGGTCGACCCCTCCATTGTTCACATCACTGACGCTGCACATTTGGA
AAGGATTAAAAGGGAGGCGATGGGAGCTGGTGTACCGGTTGTGATCGATT
TTACGGCGGGCTGGTGTGGACCTTGCCGGACTATAGCGCCTTTATTTGAG
GAGTTGAGTCAGCAATATGATGCCTGTTTCGTGAAGGTGGATATTGACGA
AGCCGACGACGTTGCGCTTACCTACAAAGTCCGGTCCATGCCGACCTTCG
TCTTTCTGAGGATAGTGGGGGATCAAATCGAAGAAGTGCGGTTTTCAGGG
TGCAACAAAATCAAGCTTGAAGGGTTGGTGAAGGCGATGTGTGCCGCGGT
GGTGAAAGGAGAAGTCAGGGAGACGAACGAGGAGAACAAGAAGAAGAAGT
AGATGGTATTCGTGCCTATGGATAGCCTATTTCACAAACGGGGTTTACAT
CGCATACACTTTCCACACGCTCTAACACGACTTCTCATTCCCTTCCTCGA
ACGCAGACAGGGACTCTTTTGTTTTAATAGGAGCATGACAAACATCTGCA
TCGGACCGCTTTGTATTCCCCTCCAAGCCCTCGTCCCCTTCCTTTTCATT
CTCTTCCGGATTGGCGTGGCATGGTTCAAAACGAACGTCCTCAAGACGCT
CTCCCCCGAGGAGAAGGCGCTTGCCGAGTTGCCACCGCCCCCTGCTGTGG
TCGAACGCAAGTGGGTCGACCCCTCCATTGTTCACATCACTGACGCTGCA
CATTTGGAAAGGATTAAAAGGGAGGCGATGGGAGCTGGTGTACCGGTTGT
GATCGATTTTACGGCGGGCTGGTGTGGACCTTGCCGGACTATAGCGCCTT
TATTTGAGGAGTTGAG
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Synonyms
Publications