EWM23532.1, cds7139 (CDS) Nannochloropsis gaditana

Overview
NameEWM23532.1
Unique Namecds7139
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:582173..582636 -
Alignment locationCM002470.1:581785..582028 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23532.1
ProductThioredoxin
Orig transcript idgnl|cribi|Naga_100416g4.4401.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:582173..582636 -
CM002470.1supercontigCM002470.1:581785..582028 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0019725cellular homeostasis
GO:0006662glycerol ether metabolic process
GO:0045454cell redox homeostasis
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005623cell
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0015035protein disulfide oxidoreductase activity
Vocabulary: INTERPRO
TermDefinition
IPR017937Thioredoxin_CS
IPR005746Thioredoxin
IPR013766Thioredoxin_domain
IPR012336Thioredoxin-like_fold
Homology
BLAST of EWM23532.1 vs. NCBI_GenBank
Match: gi|585104640|gb|EWM23532.1| (Thioredoxin [Nannochloropsis gaditana])

HSP 1 Score: 481.871 bits (1239), Expect = 3.229e-172
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0
Query:    1 MVFVPMDSLFHKRGLHRIHFPHALTRLLIPFLERRQGLFCFNRSMTNICIGPLCIPLQALVPFLFILFRIGVAWFKTNVLKTLSPEEKALAELPPPPAVVERKWVDPSIVHITDAAHLERIKREAMGAGVPVVIDFTAGWCGPCRTIAPLFEELSQQYDACFVKVDIDEADDVALTYKVRSMPTFVFLRIVGDQIEEVRFSGCNKIKLEGLVKAMCAAVVKGEVRETNEENKKKK 235
            MVFVPMDSLFHKRGLHRIHFPHALTRLLIPFLERRQGLFCFNRSMTNICIGPLCIPLQALVPFLFILFRIGVAWFKTNVLKTLSPEEKALAELPPPPAVVERKWVDPSIVHITDAAHLERIKREAMGAGVPVVIDFTAGWCGPCRTIAPLFEELSQQYDACFVKVDIDEADDVALTYKVRSMPTFVFLRIVGDQIEEVRFSGCNKIKLEGLVKAMCAAVVKGEVRETNEENKKKK
Sbjct:    1 MVFVPMDSLFHKRGLHRIHFPHALTRLLIPFLERRQGLFCFNRSMTNICIGPLCIPLQALVPFLFILFRIGVAWFKTNVLKTLSPEEKALAELPPPPAVVERKWVDPSIVHITDAAHLERIKREAMGAGVPVVIDFTAGWCGPCRTIAPLFEELSQQYDACFVKVDIDEADDVALTYKVRSMPTFVFLRIVGDQIEEVRFSGCNKIKLEGLVKAMCAAVVKGEVRETNEENKKKK 235          
BLAST of EWM23532.1 vs. NCBI_GenBank
Match: gi|553181438|ref|XP_005853566.1| (thioredoxin 1 [Nannochloropsis gaditana CCMP526] >gi|422295495|gb|EKU22794.1| thioredoxin 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 390.193 bits (1001), Expect = 1.637e-136
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0
Query:   45 MTNICIGPLCIPLQALVPFLFILFRIGVAWFKTNVLKTLSPEEKALAELPPPPAVVERKWVDPSIVHITDAAHLERIKREAMGAGVPVVIDFTAGWCGPCRTIAPLFEELSQQYDACFVKVDIDEADDVALTYKVRSMPTFVFLRIVGDQIEEVRFSGCNKIKLEGLVKAMCAAVVKGEVRETNEENKKKK 235
            MTNICIGPLCIPLQALVPFLFILFRIGVAWFKTNVLKTLSPEEKALAELPPPPAVVERKWVDPSIVHITDAAHLERIKREAMGAGVPVVIDFTAGWCGPCRTIAPLFEELSQQYDACFVKVDIDEADDVALTYKVRSMPTFVFLRIVGDQIEEVRFSGCNKIKLEGLVKAMCAAVVKGEVRETNEENKKKK
Sbjct:    1 MTNICIGPLCIPLQALVPFLFILFRIGVAWFKTNVLKTLSPEEKALAELPPPPAVVERKWVDPSIVHITDAAHLERIKREAMGAGVPVVIDFTAGWCGPCRTIAPLFEELSQQYDACFVKVDIDEADDVALTYKVRSMPTFVFLRIVGDQIEEVRFSGCNKIKLEGLVKAMCAAVVKGEVRETNEENKKKK 191          
BLAST of EWM23532.1 vs. NCBI_GenBank
Match: gi|635367899|emb|CCI43937.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 111.694 bits (278), Expect = 3.285e-27
Identity = 67/195 (34.36%), Postives = 95/195 (48.72%), Query Frame = 0
Query:   45 MTNICIGPLCIPLQALVPFLFILFRIGVAWFKTNVLKTLSPEEKALAELPPPPAVVERKWVDPSIVHITDAAHLERIKREAMGAGVPVVIDFTAGWCGPCRTIAPLFEELSQQY-DACFVKVDIDEADDVALTYKVRSMPTFVFLRIVGDQIEEVRFSGCNKIKLEGLVKAMCAAV------VKGEVRETNEENK 232
            MT  CIGP+C+P  AL PFLF++ + G  W K +VL           E P           +  ++HI      E + ++    G  +V+DFTA WCGPCRTI P F E S +Y  A F  VD+DE   +A    V +MPTF  L   G Q +E+R  G ++  LE  ++     V        GE   +N++ +
Sbjct:    1 MTTFCIGPVCVPAYALFPFLFLVLQWGWDWIKKHVLGMHDQ-----TEFP-----------NSRVIHIKSKQEWENLLQKHKYTGRTLVVDFTASWCGPCRTIKPFFHEQSVKYPSALFATVDVDEMQQIAKESGVNAMPTF-HLYKNGQQCDEIR--GADRAGLEQCIRKHYVKVDLPEEMSAGEAEASNKKQQ 176          
BLAST of EWM23532.1 vs. NCBI_GenBank
Match: gi|669145486|ref|XP_008608305.1| (thioredoxin 1 [Saprolegnia diclina VS20] >gi|530739736|gb|EQC37978.1| thioredoxin 1 [Saprolegnia diclina VS20])

HSP 1 Score: 110.538 bits (275), Expect = 9.126e-27
Identity = 66/175 (37.71%), Postives = 96/175 (54.86%), Query Frame = 0
Query:   45 MTNICIGPLCIPLQALVPFLFILFRIGVAWFKTNVLKTLSPEEKALAELPPPPA-----VVERKWVDPSIVHITDAAHLERIKREAMGAGVPVVIDFTAGWCGPCRTIAPLFEELSQQYDAC-FVKVDIDEADDVALTYKVRSMPTFVFLRIVGDQIEEVRFSGCNKIKLEGLVK 213
            MT ICIGPLC+P++A++PFL  L     AW   +    ++      A  P         + +RK V  SIV +   A  + +    + +  PV++DFTA WCGPC+ IAP F+ LS+QY +  F K+D+D  DD+A T  V +MPTF  + + G + +E    G N  KL  LV+
Sbjct:    1 MTCICIGPLCLPMEAVLPFLLALLYKAWAWLTGSAAPQVTATASCCAAEPGSAGADGSQLRQRKGVS-SIVAVHTRAEWDAL----LASSRPVIVDFTATWCGPCKKIAPTFDALSEQYPSLMFFKIDVDACDDIAATCGVSAMPTF-HVYVSGRKQDE--LCGANPSKLTALVE 167          
BLAST of EWM23532.1 vs. NCBI_GenBank
Match: gi|325190141|emb|CCA24622.1| (thioredoxin Htype putative [Albugo laibachii Nc14])

HSP 1 Score: 104.375 bits (259), Expect = 2.675e-24
Identity = 60/176 (34.09%), Postives = 86/176 (48.86%), Query Frame = 0
Query:   45 MTNICIGPLCIPLQALVPFLFILFRIGVAWFKTNVLKTLSPEEKALAELPPPPAVVERKWVDPSIVHITDAAHLERIKREAMGAGVPVVIDFTAGWCGPCRTIAPLFEELSQQYD-ACFVKVDIDEADDVALTYKVRSMPTFVFLRIVGDQIEEVRFSGCNKIKLEGLVKAMCAAV 219
            MT  CIGP+C+P  AL P L+   +    W K N L           + P           +  ++HI        + ++    G  +V+DFTA WCGPCRTI P F E S +Y  A FV VD+DE   +A    V +MPTF F +  G + +E+R  G ++ +LE  +K +   V
Sbjct:    1 MTTFCIGPVCVPAYALFPLLYFFLQWSWDWIKKNALGM-----NDQTDFP-----------NSRVIHIKSKEDWGNVLQQHKEIGRTLVVDFTASWCGPCRTIKPFFHEQSVKYPCAMFVTVDVDELKQIAKESGVNAMPTFQFYKD-GKRCDEIR--GADRARLEQCIKNLYVEV 157          
BLAST of EWM23532.1 vs. NCBI_GenBank
Match: gi|568047712|gb|ETM44785.1| (thioredoxin [Phytophthora parasitica] >gi|568047713|gb|ETM44786.1| thioredoxin, variant [Phytophthora parasitica])

HSP 1 Score: 106.301 bits (264), Expect = 6.127e-24
Identity = 61/170 (35.88%), Postives = 93/170 (54.71%), Query Frame = 0
Query:   45 MTNICIGPLCIPLQALVPFLFILFRIGVAWFKTNVLKTLSPEEKALAELPPPPAVVERKWVDPSIVHITDAAHLERIKREAMGAGVPVVIDFTAGWCGPCRTIAPLFEELSQQYD-ACFVKVDIDEADDVALTYKVRSMPTFVFLRIVGDQIEEVRFSGCNKIKLEGLVK 213
            MT ICIG  CIPL AL+PF  ++ +    WF+ NVL     +++ + E             +  ++H+T     + +  +       VV+DF+A WCGPCR I+P++ ELS +Y    F+KVD+DE   V+    V +MPTF F R  G + +E+R  G +K  LE L++
Sbjct:    1 MTTICIGGFCIPLYALLPFALMMLQGFWNWFRKNVL---GQDDEKIPE-------------NTRVIHVTSELQFKELLGKGKATKRSVVVDFSATWCGPCRYISPVYHELSAKYPCTIFLKVDVDELKSVSRGCGVTAMPTFQFFR-GGVKCDEMR--GADKNGLEALIQ 151          

HSP 2 Score: 71.2478 bits (173), Expect = 5.779e-11
Identity = 39/107 (36.45%), Postives = 62/107 (57.94%), Query Frame = 0
Query:  107 PSIVHITDAAHLERIKREAMGAGVPVVIDFTAGWCGPCRTIAPLFEELSQQYDAC-FVKVDIDEADDVALTYKVRSMPTFVFLRIVGDQIEEVRFSGCNKIKLEGLV 212
            P +  +T     E++ ++   +   +V+DF A WC PC  IAPLFEELS ++ A  F +VD+DE + VA  + V S+P+F   +  G  ++E+  SG  +  LE +V
Sbjct:  187 PQVTTVTSEEQWEKLMQQNQESNKALVVDFWATWCKPCVEIAPLFEELSGRFPAALFARVDVDELESVAEDFNVLSLPSFKVFK-GGKVVDEL--SGAIRSALESMV 290          
BLAST of EWM23532.1 vs. NCBI_GenBank
Match: gi|675169171|ref|XP_008893470.1| (thioredoxin [Phytophthora parasitica INRA-310] >gi|568107077|gb|ETN21707.1| thioredoxin [Phytophthora parasitica INRA-310] >gi|570325635|gb|ETO73583.1| thioredoxin [Phytophthora parasitica P1976] >gi|570982881|gb|ETP42836.1| thioredoxin [Phytophthora parasitica P10297])

HSP 1 Score: 106.301 bits (264), Expect = 6.191e-24
Identity = 61/170 (35.88%), Postives = 93/170 (54.71%), Query Frame = 0
Query:   45 MTNICIGPLCIPLQALVPFLFILFRIGVAWFKTNVLKTLSPEEKALAELPPPPAVVERKWVDPSIVHITDAAHLERIKREAMGAGVPVVIDFTAGWCGPCRTIAPLFEELSQQYD-ACFVKVDIDEADDVALTYKVRSMPTFVFLRIVGDQIEEVRFSGCNKIKLEGLVK 213
            MT ICIG  CIPL AL+PF  ++ +    WF+ NVL     +++ + E             +  ++H+T     + +  +       VV+DF+A WCGPCR I+P++ ELS +Y    F+KVD+DE   V+    V +MPTF F R  G + +E+R  G +K  LE L++
Sbjct:    1 MTTICIGGFCIPLYALLPFALMMLQGFWNWFRKNVL---GQDDEKIPE-------------NTRVIHVTSELQFKELLGKGKATKRSVVVDFSATWCGPCRYISPVYHELSAKYPCTIFLKVDVDELKSVSRGCGVTAMPTFQFFR-GGVKCDEMR--GADKNGLEALIQ 151          

HSP 2 Score: 72.0182 bits (175), Expect = 3.048e-11
Identity = 39/107 (36.45%), Postives = 62/107 (57.94%), Query Frame = 0
Query:  107 PSIVHITDAAHLERIKREAMGAGVPVVIDFTAGWCGPCRTIAPLFEELSQQYDAC-FVKVDIDEADDVALTYKVRSMPTFVFLRIVGDQIEEVRFSGCNKIKLEGLV 212
            P +  +T     E++ ++   +   +V+DF A WC PC  IAPLFEELS ++ A  F +VD+DE + VA  + V S+P+F   +  G  ++E+  SG  +  LE +V
Sbjct:  187 PQVTTVTSEEQWEKLMQQNQESNKALVVDFWATWCKPCVEIAPLFEELSGRFPAAVFARVDVDELESVAEDFNVSSLPSFKVFK-GGKVVDEL--SGAIRSALESMV 290          
BLAST of EWM23532.1 vs. NCBI_GenBank
Match: gi|567988074|gb|ETL38358.1| (thioredoxin [Phytophthora parasitica] >gi|570949509|gb|ETP14766.1| thioredoxin [Phytophthora parasitica CJ01A1])

HSP 1 Score: 106.301 bits (264), Expect = 6.388e-24
Identity = 61/170 (35.88%), Postives = 93/170 (54.71%), Query Frame = 0
Query:   45 MTNICIGPLCIPLQALVPFLFILFRIGVAWFKTNVLKTLSPEEKALAELPPPPAVVERKWVDPSIVHITDAAHLERIKREAMGAGVPVVIDFTAGWCGPCRTIAPLFEELSQQYD-ACFVKVDIDEADDVALTYKVRSMPTFVFLRIVGDQIEEVRFSGCNKIKLEGLVK 213
            MT ICIG  CIPL AL+PF  ++ +    WF+ NVL     +++ + E             +  ++H+T     + +  +       VV+DF+A WCGPCR I+P++ ELS +Y    F+KVD+DE   V+    V +MPTF F R  G + +E+R  G +K  LE L++
Sbjct:    1 MTTICIGGFCIPLYALLPFALMMLQGFWNWFRKNVL---GQDDEKIPE-------------NTRVIHVTSELQFKELLGKGKATKRSVVVDFSATWCGPCRYISPVYHELSAKYPCTIFLKVDVDELKSVSRGCGVTAMPTFQFFR-GGVKCDEMR--GADKNGLEALIQ 151          

HSP 2 Score: 72.0182 bits (175), Expect = 2.988e-11
Identity = 39/107 (36.45%), Postives = 62/107 (57.94%), Query Frame = 0
Query:  107 PSIVHITDAAHLERIKREAMGAGVPVVIDFTAGWCGPCRTIAPLFEELSQQYDAC-FVKVDIDEADDVALTYKVRSMPTFVFLRIVGDQIEEVRFSGCNKIKLEGLV 212
            P +  +T     E++ ++   +   +V+DF A WC PC  IAPLFEELS ++ A  F +VD+DE + VA  + V S+P+F   +  G  ++E+  SG  +  LE +V
Sbjct:  187 PQVTTVTSEEQWEKLMQQNQESNKALVVDFWATWCKPCVEIAPLFEELSGRFPAALFARVDVDELESVAEDFNVSSLPSFKVFK-GGKVVDEL--SGAIRSALESMV 290          
BLAST of EWM23532.1 vs. NCBI_GenBank
Match: gi|566022027|gb|ETI44938.1| (hypothetical protein F443_10382 [Phytophthora parasitica P1569] >gi|567959367|gb|ETK84940.1| hypothetical protein L915_10157 [Phytophthora parasitica])

HSP 1 Score: 105.916 bits (263), Expect = 9.598e-24
Identity = 61/170 (35.88%), Postives = 93/170 (54.71%), Query Frame = 0
Query:   45 MTNICIGPLCIPLQALVPFLFILFRIGVAWFKTNVLKTLSPEEKALAELPPPPAVVERKWVDPSIVHITDAAHLERIKREAMGAGVPVVIDFTAGWCGPCRTIAPLFEELSQQYDAC-FVKVDIDEADDVALTYKVRSMPTFVFLRIVGDQIEEVRFSGCNKIKLEGLVK 213
            MT ICIG  CIPL AL+PF  ++ +    WF+ NVL     +++ + E             +  ++H+T     + +  +       VV+DF+A WCGPCR I+P++ ELS +Y    F+KVD+DE   V+    V +MPTF F R  G + +E+R  G +K  LE L++
Sbjct:    1 MTTICIGGFCIPLYALLPFALMMLQGFWNWFRKNVL---GQDDEKIPE-------------NTRVIHVTSELQFKELLGKGKATKRSVVVDFSATWCGPCRYISPVYHELSAKYPCTIFLKVDVDELKSVSRGCGVTAMPTFQFFR-GGVKCDEMR--GADKNGLEALIQ 151          

HSP 2 Score: 70.4774 bits (171), Expect = 1.160e-10
Identity = 38/107 (35.51%), Postives = 62/107 (57.94%), Query Frame = 0
Query:  107 PSIVHITDAAHLERIKREAMGAGVPVVIDFTAGWCGPCRTIAPLFEELSQQYDAC-FVKVDIDEADDVALTYKVRSMPTFVFLRIVGDQIEEVRFSGCNKIKLEGLV 212
            P +  +T     E++ ++   +   +V+DF A WC PC  IAP FEELS ++ A  FV+VD+DE + +   + V S+P F   +  G+ ++E+  SG  +  LEG+V
Sbjct:  187 PQVTTVTSEEQWEKLMQQNQESNKALVVDFWATWCKPCVEIAPFFEELSCRFPAAVFVRVDVDEVESLTDEFDVSSLPCFKVFK-GGEAVDEL--SGAIRGALEGMV 290          
BLAST of EWM23532.1 vs. NCBI_GenBank
Match: gi|1101383775|dbj|GAU99854.1| (hypothetical protein RvY_10794 [Ramazzottius varieornatus])

HSP 1 Score: 99.7525 bits (247), Expect = 2.737e-23
Identity = 50/105 (47.62%), Postives = 71/105 (67.62%), Query Frame = 0
Query:  112 ITDAAHLERIKREAMGAGVPVVIDFTAGWCGPCRTIAPLFEELSQQY-DACFVKVDIDEADDVALTYKVRSMPTFVFLRIVGDQIEEVRFSGCNKIKLEGLVKAM 215
            +TD + LE+I ++A   G  V+IDF+A WCGPC+ I P +  LS QY DA F+ VD+D+A+++A  Y V SMPTFVF++  G  +E  RFSG N  KLE ++  +
Sbjct:   10 VTDKSDLEKILKDA--GGKLVIIDFSAKWCGPCKNIHPKYTALSSQYSDAVFLTVDVDDAEEIAAAYDVSSMPTFVFVK-NGKSVE--RFSGANPTKLEEMINKL 109          
The following BLAST results are available for this feature:
BLAST of EWM23532.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104640|gb|EWM23532.1|3.229e-172100.00Thioredoxin [Nannochloropsis gaditana][more]
gi|553181438|ref|XP_005853566.1|1.637e-136100.00thioredoxin 1 [Nannochloropsis gaditana CCMP526] >... [more]
gi|635367899|emb|CCI43937.1|3.285e-2734.36unnamed protein product [Albugo candida][more]
gi|669145486|ref|XP_008608305.1|9.126e-2737.71thioredoxin 1 [Saprolegnia diclina VS20] >gi|53073... [more]
gi|325190141|emb|CCA24622.1|2.675e-2434.09thioredoxin Htype putative [Albugo laibachii Nc14][more]
gi|568047712|gb|ETM44785.1|6.127e-2435.88thioredoxin [Phytophthora parasitica] >gi|56804771... [more]
gi|675169171|ref|XP_008893470.1|6.191e-2435.88thioredoxin [Phytophthora parasitica INRA-310] >gi... [more]
gi|567988074|gb|ETL38358.1|6.388e-2435.88thioredoxin [Phytophthora parasitica] >gi|57094950... [more]
gi|566022027|gb|ETI44938.1|9.598e-2435.88hypothetical protein F443_10382 [Phytophthora para... [more]
gi|1101383775|dbj|GAU99854.1|2.737e-2347.62hypothetical protein RvY_10794 [Ramazzottius varie... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7156rna7156Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications