rna7146, rna7146 (mRNA) Nannochloropsis gaditana

Overview
Namerna7146
Unique Namerna7146
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1464
Alignment locationCM002470.1:551938..554107 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100339g4.6965.mrna
Orig protein idgnl|cribi|Naga_100339g4.6965
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:551938..554107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100339g4gene6908Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7146rna7146-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23543.1cds7129Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7146 ID=rna7146|Name=rna7146|organism=Nannochloropsis gaditana|type=mRNA|length=1464bp
AAGAAGCCACATCACAAGGCCAGAATTGAAGCTGCTTCCTCCCCCCTTTC
TCCCCACCCGATGCCTTTCAATATAACGGAGTCGATGAACGCACAGTATT
TCAGGGGGGGAGAGCCAGGGCTGTGCGATGGCTTGGGAGGTTCGGGCATG
CGGGTGAGGAGGAGGGAGGGCCCCGAACCTCCTCCTGAAGCTGTTGCAGA
TTATGCCTATGCCCCTTTAAGGGACATATACAAGGCAGGGGTGCCCAGGA
AAGTATGTCCGAGTGTCTGTATGCCTATTTGGGGATTTTTTTCGCAAGTT
TCGTGGGAAATTCGATTTGGACGTGGATTTGGTACTCGAACATGTTCAGT
TAAGCACCCGTCGATCATTCTTTGACTCCCTCCCTCCCCCGCCCCTAAAC
CCCCGGCTCAACAATATGAAAGTTCTACTCTCTCGACACTTGAGCATCAT
AATGTCCACTGTCAGTGCACTTTCAAGTTCCTCATCTGCGGCACCTCCCT
CGTCCAACGCCGTTGTTCCTGCCACTTATTCCAACCTCAATGACAACGCC
TTGCAGAAACCTTTGCTCGATGCTACTCGTCCCGAGCCCGTTGGGGCCTC
TATTCTTTACGAAGATGACTTCATAAAACTAACAGGGTCTTCACTTCGCA
TCAAATGGTATTATTTTCCCATCGGAGCCTCGAAGGTTATCCCGTTGAAG
AGCATTCAAAAGATATCTTTAAGACCTTTAGGAAGCACGTGGCAAGGCCA
GTACAAACACTGGGGCATGGCCATCGATTTCAAACGCTGGTGGCCGAGCG
ACATGTTGCGCCATCAACGTGCGCATTTTATCGAGGTCGATTGCGGAACA
TGGCCCCTCGTCGCTTTTACGCTCAAAGAATCAGAGGATTTTTACCGTTC
TCTCTCCCAGGCCGTAGCAGCAGTCAGGACGGGTAAAGGAATAATCTAGC
AGGCAGACGCGCAGAGTGGTAGTGCTCTGCCGGGAGTTCCCACTTTGGAG
ACCCATTTTGGGCTGTATTTTGAAATGTACCATGTCTTCTGTAAGCAAGC
CAGGGGGCACAGGGAATAGGATTTTTAGCCCCTTCCACGACTTTCCATCC
TTATAAAATTGGCATCGGGAAAGTGCCGACTTATATCTGAAGAATTATAG
AATGGGTTGAAAAATGGACAAGAGCAGGTTGAACACAACCTCCCGCCACC
GGGTCTGAAAATGTTTTAAAACCCGATCTTACGTACATCACAGAGGCCCT
ACACAGCACTGTGGGTGGAACGAGCATGCTGTAAAAATGGGCTGTCTTAC
ACAACAACAAAAAATTAAACACGTTAGCATGCACCATGCAAAGGCCATGA
AAACTTGCAAGATCTGCGTGTGCGCTCTTCACGTTCTTATCGCTCGCGGA
CGCCTCAAGAAGAAAGTCGAGACTTGTCCGTGATGTTCCACGATCGACCT
GCGTCCGTGCATGC
back to top

protein sequence of rna7146

>rna7146-protein ID=rna7146-protein|Name=rna7146|organism=Nannochloropsis gaditana|type=polypeptide|length=197bp
MKVLLSRHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLNDNALQKPL
LDATRPEPVGASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKI
SLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQRVGRLWGNVSEGSVPH
GFGSLNDVQPTIKSTRAFHVGLLACPFFILYLSFILGSVPPSSRRPA
back to top

mRNA from alignment at CM002470.1:551938..554107-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7146 ID=rna7146|Name=rna7146|organism=Nannochloropsis gaditana|type=mRNA|length=2170bp|location=Sequence derived from alignment at CM002470.1:551938..554107- (Nannochloropsis gaditana)
AAGAAGCCACATCACAAGGCCAGAATTGAAGCTGCTTCCTCCCCCCTTTC
TCCCCACCCGATGCCTTTCAATATAACGGAGTCGATGAACGCACAGTATT
TCAGGGGGGGAGAGCCAGGGCTGTGCGATGGCTTGGGAGGTTCGGGCATG
CGGGTGAGGAGGAGGGAGGGCCCCGAACCTCCTCCTGAAGCTGTTGCAGA
TTATGCCTATGCCCCTTTAAGGGACATATACAAGGCAGGGGTGCCCAGGA
AAGTATGTCCGAGTGTCTGTATGCCTATTTGGGGATTTTTTTCGCAAGTT
TCGTGGGAAATTCGATTTGGACGTGGATTTGGTACTCGAACATGTTCAGT
TAAGCACCCGTCGATCATTCTTTGACTCCCTCCCTCCCCCGCCCCTAAAC
CCCCGGCTCAACAATATGAAAGTTCTACTCTCTCGACACTTGAGCATCAT
AATGTCCACTGTCAGTGCACTTTCAAGTTCCTCATCTGCGGCACCTCCCT
CGTCCAACGCCGTTGTTCCTGCCACTTATTCCAACCTCAATGACAACGCC
TTGCAGAAACCTTTGCTCGATGCTACTCGTCCCGAGCCCGTTGGGGCCTC
TATTCTTTACGAAGATGACTTCATAAAACTAACAGGGTCTTCACTTCGCA
TCAAATGGTATTATTTTCCCATCGGAGCCTCGAAGGTTATCCCGTTGAAG
AGCATTCAAAAGGTGAGCGACGGGGCCGGGGAAGTGTATACATGGGAACG
AGAGGAATATAGGCACAAACGCCCCAAAAGGTGGGTGAAAAGACGATTAT
GATATGAGTATATTTATTCTGACCTCCAGTCCCTTTCTTCAGTTAAATGT
CACGAAGTCAGTATACGGACCAAGACGAGTGTACGCAAAAACCTAATTGC
TCTTTCCCTGTCCAGATATCTTTAAGACCTTTAGGAAGCACGTGGCAAGG
CCAGTACAAACACTGGGGCATGGCCATCGATTTCAAACGCTGGTGGCCGA
GCGACATGTTGCGCCATCAACGTGTAGGGCGGTTATGGGGAAATGTTTCG
GAGGGATCGGTGCCGCATGGGTTTGGCTCGCTGAATGATGTCCAGCCAAC
AATCAAAAGCACCCGTGCCTTTCATGTGGGACTCTTGGCTTGTCCTTTTT
TTATCCTTTATCTATCCTTTATCTTGGGAAGTGTCCCTCCTTCATCACGT
CGTCCGGCTTGATTTCCCACCTCTCTCCCCCTAACGCTTTCCCTCGTGCC
CGACCCGTTACCGCTTCCGTTCATTTCCTCGCTTCCCTGCCTCCATCTCT
TTCCTCTCTCAGGCGCATTTTATCGAGGTCGATTGCGGAACATGGCCCCT
CGTCGCTTTTACGCTCAAAGAATCAGAGGATTTTTACCGTTCTCTCTCCC
AGGTTCGATCAGGGGGCGCAGACGAAAGGGGTTAAGAGCAAGGTTGCCTC
AAGTAGTTGGGCTATCATTGCAGTGAGAAAAGGGGAGAAAAGGTGGAGAA
ATGAATAGAGAAAGGAGAGAAATGCGGCATGAGTCTCTGCCAGACGGGGT
CAGTGTTGACTGTATTGAAGTTTCATCGCAGCATTTGAAACTGGCTTCTT
CCTCACGCATACGTAGGCCGTAGCAGCAGTCAGGACGGGTAAAGGAATAA
TCTAGCAGGCAGACGCGCAGAGTGGTAGTGCTCTGCCGGGAGTTCCCACT
TTGGAGACCCATTTTGGGCTGTATTTTGAAATGTACCATGTCTTCTGTAA
GCAAGCCAGGGGGCACAGGGAATAGGATTTTTAGCCCCTTCCACGACTTT
CCATCCTTATAAAATTGGCATCGGGAAAGTGCCGACTTATATCTGAAGAA
TTATAGAATGGGTTGAAAAATGGACAAGAGCAGGTTGAACACAACCTCCC
GCCACCGGGTCTGAAAATGTTTTAAAACCCGATCTTACGTACATCACAGA
GGCCCTACACAGCACTGTGGGTGGAACGAGCATGCTGTAAAAATGGGCTG
TCTTACACAACAACAAAAAATTAAACACGTTAGCATGCACCATGCAAAGG
CCATGAAAACTTGCAAGATCTGCGTGTGCGCTCTTCACGTTCTTATCGCT
CGCGGACGCCTCAAGAAGAAAGTCGAGACTTGTCCGTGATGTTCCACGAT
CGACCTGCGTCCGTGCATGC
back to top

Coding sequence (CDS) from alignment at CM002470.1:551938..554107-

>rna7146 ID=rna7146|Name=rna7146|organism=Nannochloropsis gaditana|type=CDS|length=1188bp|location=Sequence derived from alignment at CM002470.1:551938..554107- (Nannochloropsis gaditana)
ATATCTTTAAGACCTTTAGGAAGCACGTGGCAAGGCCAGTACAAACACTG
GGGCATGGCCATCGATTTCAAACGCTGGTGGCCGAGCGACATGTTGCGCC
ATCAACGTGTAGGGCGGTTATGGGGAAATGTTTCGGAGGGATCGGTGCCG
CATGGGTTTGGCTCGCTGAATGATGTCCAGCCAACAATCAAAAGCACCCG
TGCCTTTCATGTGGGACTCTTGGCTTGTCCTTTTTTTATCCTTTATCTAT
CCTTTATCTTGGGAAGTGTCCCTCCTTCATCACGTCGTCCGGCTTGAATG
AAAGTTCTACTCTCTCGACACTTGAGCATCATAATGTCCACTGTCAGTGC
ACTTTCAAGTTCCTCATCTGCGGCACCTCCCTCGTCCAACGCCGTTGTTC
CTGCCACTTATTCCAACCTCAATGACAACGCCTTGCAGAAACCTTTGCTC
GATGCTACTCGTCCCGAGCCCGTTGGGGCCTCTATTCTTTACGAAGATGA
CTTCATAAAACTAACAGGGTCTTCACTTCGCATCAAATGGTATTATTTTC
CCATCGGAGCCTCGAAGGTTATCCCGTTGAAGAGCATTCAAAAGATATCT
TTAAGACCTTTAGGAAGCACGTGGCAAGGCCAGTACAAACACTGGGGCAT
GGCCATCGATTTCAAACGCTGGTGGCCGAGCGACATGTTGCGCCATCAAC
GTGTAGGGCGGTTATGGGGAAATGTTTCGGAGGGATCGGTGCCGCATGGG
TTTGGCTCGCTGAATGATGTCCAGCCAACAATCAAAAGCACCCGTGCCTT
TCATGTGGGACTCTTGGCTTGTCCTTTTTTTATCCTTTATCTATCCTTTA
TCTTGGGAAGTGTCCCTCCTTCATCACGTCGTCCGGCTTGAATGAAAGTT
CTACTCTCTCGACACTTGAGCATCATAATGTCCACTGTCAGTGCACTTTC
AAGTTCCTCATCTGCGGCACCTCCCTCGTCCAACGCCGTTGTTCCTGCCA
CTTATTCCAACCTCAATGACAACGCCTTGCAGAAACCTTTGCTCGATGCT
ACTCGTCCCGAGCCCGTTGGGGCCTCTATTCTTTACGAAGATGACTTCAT
AAAACTAACAGGGTCTTCACTTCGCATCAAATGGTATTATTTTCCCATCG
GAGCCTCGAAGGTTATCCCGTTGAAGAGCATTCAAAAG
back to top
Synonyms
Publications