EWM23543.1, cds7129 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23543.1 vs. NCBI_GenBank
Match: gi|585104657|gb|EWM23543.1| (hypothetical protein Naga_100339g4 [Nannochloropsis gaditana]) HSP 1 Score: 399.438 bits (1025), Expect = 7.778e-141 Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0
Query: 1 MKVLLSRHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLNDNALQKPLLDATRPEPVGASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQRVGRLWGNVSEGSVPHGFGSLNDVQPTIKSTRAFHVGLLACPFFILYLSFILGSVPPSSRRPA 197
MKVLLSRHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLNDNALQKPLLDATRPEPVGASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQRVGRLWGNVSEGSVPHGFGSLNDVQPTIKSTRAFHVGLLACPFFILYLSFILGSVPPSSRRPA
Sbjct: 1 MKVLLSRHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLNDNALQKPLLDATRPEPVGASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQRVGRLWGNVSEGSVPHGFGSLNDVQPTIKSTRAFHVGLLACPFFILYLSFILGSVPPSSRRPA 197
BLAST of EWM23543.1 vs. NCBI_GenBank
Match: gi|585104656|gb|EWM23542.1| (hypothetical protein Naga_100339g4 [Nannochloropsis gaditana]) HSP 1 Score: 275.018 bits (702), Expect = 7.192e-92 Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
Query: 1 MKVLLSRHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLNDNALQKPLLDATRPEPVGASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQR 135
MKVLLSRHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLNDNALQKPLLDATRPEPVGASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQR
Sbjct: 1 MKVLLSRHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLNDNALQKPLLDATRPEPVGASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQR 135
BLAST of EWM23543.1 vs. NCBI_GenBank
Match: gi|553180515|ref|XP_005853415.1| (hypothetical protein NGA_0223002 [Nannochloropsis gaditana CCMP526] >gi|553186192|ref|XP_005854376.1| hypothetical protein NGA_0223001 [Nannochloropsis gaditana CCMP526] >gi|422294682|gb|EKU21982.1| hypothetical protein NGA_0223001 [Nannochloropsis gaditana CCMP526] >gi|422295645|gb|EKU22944.1| hypothetical protein NGA_0223002 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 150.599 bits (379), Expect = 1.169e-43 Identity = 92/99 (92.93%), Postives = 93/99 (93.94%), Query Frame = 0
Query: 1 MKVLLSRHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLNDNALQKPLLDATRPEPVGASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQK 99
MKVL RHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLN NALQKPLLDAT PEPVGASILYEDDF+KLT SSL IKWYYFPIGASKVIPLKSIQK
Sbjct: 1 MKVLPFRHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLNHNALQKPLLDATCPEPVGASILYEDDFVKLTESSLCIKWYYFPIGASKVIPLKSIQK 99
BLAST of EWM23543.1 vs. NCBI_GenBank
Match: gi|1056522337|ref|WP_067955847.1| (hypothetical protein [Mycobacterium sp. NAZ190054] >gi|985067358|gb|KWX66858.1| hypothetical protein ASJ79_23970 [Mycobacterium sp. NAZ190054]) HSP 1 Score: 61.6178 bits (148), Expect = 5.632e-9 Identity = 29/76 (38.16%), Postives = 49/76 (64.47%), Query Frame = 0
Query: 60 GASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQR 135
G++ Y+D I+L ++ ++ Y+FP G SK+IPL+ I+ PLG+ + +++ WG + DF+RW P DM R +R
Sbjct: 6 GSARFYDDGRIQLDREAVTLRRYHFPSGTSKIIPLREIRGYRAEPLGA-FTHRFRLWGTS-DFRRWLPLDMNRLRR 79
BLAST of EWM23543.1 vs. NCBI_GenBank
Match: gi|1178630464|ref|WP_083142791.1| (hypothetical protein [Mycobacterium parafortuitum] >gi|1177152753|gb|ORB30725.1| hypothetical protein BST38_08195 [Mycobacterium parafortuitum]) HSP 1 Score: 60.8474 bits (146), Expect = 8.033e-9 Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = 0
Query: 59 VGASILYEDD-FIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLR 132
GA LY DD I+L +L ++ Y+FP G SKVIPL+ I+ S PLG T+ +++ WG + DF+RW P D R
Sbjct: 4 AGAQTLYYDDGRIQLDHEALTLRRYHFPSGTSKVIPLRKIRSYSADPLG-TFTHRFRVWGSS-DFRRWLPLDTSR 76
BLAST of EWM23543.1 vs. NCBI_GenBank
Match: gi|860585985|ref|WP_048472904.1| (hypothetical protein [Mycobacterium chlorophenolicum] >gi|859091674|gb|KMO70148.1| hypothetical protein MCHLDSM_05036 [Mycobacterium chlorophenolicum]) HSP 1 Score: 60.8474 bits (146), Expect = 9.957e-9 Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 0
Query: 56 PEP-VGASILYEDD-FIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLR 132
PEP VG S LY DD I+L +L ++ Y+FP G SK+IPL+ I+ + PLG + +++ WG DF+RW P D+ R
Sbjct: 4 PEPTVGISNLYYDDGLIQLDREALTLRRYHFPSGTSKIIPLRDIRGYQVAPLG-LFLSRFRLWGT--DFRRWLPLDVNR 79
BLAST of EWM23543.1 vs. NCBI_GenBank
Match: gi|693464781|gb|KGI71215.1| (hypothetical protein EU78_25925 [Mycobacterium rufum]) HSP 1 Score: 60.077 bits (144), Expect = 1.730e-8 Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = 0
Query: 56 PEP-VG-ASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLR 132
PEP VG A++ Y+D I+L +L ++ Y+FP G SK+IPL+ I+ + PLG +++ WG DF+RW P D+ R
Sbjct: 4 PEPTVGIANLYYDDGLIQLDREALTLRRYHFPSGTSKIIPLRDIRDYQVAPLG-LLMSRFRLWG--TDFRRWLPLDVNR 79
BLAST of EWM23543.1 vs. NCBI_GenBank
Match: gi|860423315|ref|WP_048421262.1| (hypothetical protein [Mycobacterium chubuense] >gi|859091412|gb|KMO69892.1| hypothetical protein MCHUDSM44219_05394 [Mycobacterium chubuense] >gi|1177063146|gb|ORA44331.1| hypothetical protein BST22_25475 [Mycobacterium chubuense]) HSP 1 Score: 59.6918 bits (143), Expect = 2.365e-8 Identity = 35/79 (44.30%), Postives = 49/79 (62.03%), Query Frame = 0
Query: 56 PEP-VGASILYEDD-FIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLR 132
PEP VG S LY DD I+L +L ++ Y+FP G SK+IPL+ I+ + PLG +++ WG DF+RW P D+ R
Sbjct: 4 PEPTVGISNLYYDDGLIQLDREALTLRRYHFPSGTSKIIPLRDIRGYQVAPLG-LLLSRFRLWGT--DFRRWLPLDVNR 79
BLAST of EWM23543.1 vs. NCBI_GenBank
Match: gi|504631057|ref|WP_014818159.1| (hypothetical protein [Mycobacterium chubuense] >gi|390618543|gb|AFM19693.1| hypothetical protein Mycch_5006 [Mycobacterium chubuense NBB4]) HSP 1 Score: 58.9214 bits (141), Expect = 4.062e-8 Identity = 29/72 (40.28%), Postives = 44/72 (61.11%), Query Frame = 0
Query: 61 ASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLR 132
S+ Y+D I+L +L ++ Y+FP G SK+IPL+ I + PLG Q +++ WG DF+RW P D+ R
Sbjct: 5 GSLYYDDGLIQLDREALTLRRYHFPSGTSKIIPLRDILGYRISPLGLVMQ-RFRLWG--TDFRRWLPLDVYR 73
BLAST of EWM23543.1 vs. NCBI_GenBank
Match: gi|950025017|ref|WP_057150722.1| (hypothetical protein [Mycobacterium sp. Soil538] >gi|946377286|gb|KRE28061.1| hypothetical protein ASG82_10820 [Mycobacterium sp. Soil538]) HSP 1 Score: 58.9214 bits (141), Expect = 4.700e-8 Identity = 34/78 (43.59%), Postives = 49/78 (62.82%), Query Frame = 0
Query: 57 EP-VGASILYEDD-FIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLR 132
EP VG S LY DD I+L +L ++ Y+FP G SK+IPL+ I+ + PLG + +++ WG DF+RW P D+ R
Sbjct: 5 EPTVGISNLYYDDGLIQLDREALTLRRYHFPSGTSKIIPLRDIRGYQVAPLG-LFMSRFRLWG--TDFRRWLPLDVNR 79 The following BLAST results are available for this feature:
BLAST of EWM23543.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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