EWM23543.1, cds7129 (CDS) Nannochloropsis gaditana

Overview
NameEWM23543.1
Unique Namecds7129
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:553396..553692 -
Alignment locationCM002470.1:552896..553192 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23543.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100339g4.6965.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:553396..553692 -
CM002470.1supercontigCM002470.1:552896..553192 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM23543.1 vs. NCBI_GenBank
Match: gi|585104657|gb|EWM23543.1| (hypothetical protein Naga_100339g4 [Nannochloropsis gaditana])

HSP 1 Score: 399.438 bits (1025), Expect = 7.778e-141
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0
Query:    1 MKVLLSRHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLNDNALQKPLLDATRPEPVGASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQRVGRLWGNVSEGSVPHGFGSLNDVQPTIKSTRAFHVGLLACPFFILYLSFILGSVPPSSRRPA 197
            MKVLLSRHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLNDNALQKPLLDATRPEPVGASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQRVGRLWGNVSEGSVPHGFGSLNDVQPTIKSTRAFHVGLLACPFFILYLSFILGSVPPSSRRPA
Sbjct:    1 MKVLLSRHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLNDNALQKPLLDATRPEPVGASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQRVGRLWGNVSEGSVPHGFGSLNDVQPTIKSTRAFHVGLLACPFFILYLSFILGSVPPSSRRPA 197          
BLAST of EWM23543.1 vs. NCBI_GenBank
Match: gi|585104656|gb|EWM23542.1| (hypothetical protein Naga_100339g4 [Nannochloropsis gaditana])

HSP 1 Score: 275.018 bits (702), Expect = 7.192e-92
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
Query:    1 MKVLLSRHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLNDNALQKPLLDATRPEPVGASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQR 135
            MKVLLSRHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLNDNALQKPLLDATRPEPVGASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQR
Sbjct:    1 MKVLLSRHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLNDNALQKPLLDATRPEPVGASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQR 135          
BLAST of EWM23543.1 vs. NCBI_GenBank
Match: gi|553180515|ref|XP_005853415.1| (hypothetical protein NGA_0223002 [Nannochloropsis gaditana CCMP526] >gi|553186192|ref|XP_005854376.1| hypothetical protein NGA_0223001 [Nannochloropsis gaditana CCMP526] >gi|422294682|gb|EKU21982.1| hypothetical protein NGA_0223001 [Nannochloropsis gaditana CCMP526] >gi|422295645|gb|EKU22944.1| hypothetical protein NGA_0223002 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 150.599 bits (379), Expect = 1.169e-43
Identity = 92/99 (92.93%), Postives = 93/99 (93.94%), Query Frame = 0
Query:    1 MKVLLSRHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLNDNALQKPLLDATRPEPVGASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQK 99
            MKVL  RHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLN NALQKPLLDAT PEPVGASILYEDDF+KLT SSL IKWYYFPIGASKVIPLKSIQK
Sbjct:    1 MKVLPFRHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLNHNALQKPLLDATCPEPVGASILYEDDFVKLTESSLCIKWYYFPIGASKVIPLKSIQK 99          
BLAST of EWM23543.1 vs. NCBI_GenBank
Match: gi|1056522337|ref|WP_067955847.1| (hypothetical protein [Mycobacterium sp. NAZ190054] >gi|985067358|gb|KWX66858.1| hypothetical protein ASJ79_23970 [Mycobacterium sp. NAZ190054])

HSP 1 Score: 61.6178 bits (148), Expect = 5.632e-9
Identity = 29/76 (38.16%), Postives = 49/76 (64.47%), Query Frame = 0
Query:   60 GASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQR 135
            G++  Y+D  I+L   ++ ++ Y+FP G SK+IPL+ I+     PLG+ +  +++ WG + DF+RW P DM R +R
Sbjct:    6 GSARFYDDGRIQLDREAVTLRRYHFPSGTSKIIPLREIRGYRAEPLGA-FTHRFRLWGTS-DFRRWLPLDMNRLRR 79          
BLAST of EWM23543.1 vs. NCBI_GenBank
Match: gi|1178630464|ref|WP_083142791.1| (hypothetical protein [Mycobacterium parafortuitum] >gi|1177152753|gb|ORB30725.1| hypothetical protein BST38_08195 [Mycobacterium parafortuitum])

HSP 1 Score: 60.8474 bits (146), Expect = 8.033e-9
Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = 0
Query:   59 VGASILYEDD-FIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLR 132
             GA  LY DD  I+L   +L ++ Y+FP G SKVIPL+ I+  S  PLG T+  +++ WG + DF+RW P D  R
Sbjct:    4 AGAQTLYYDDGRIQLDHEALTLRRYHFPSGTSKVIPLRKIRSYSADPLG-TFTHRFRVWGSS-DFRRWLPLDTSR 76          
BLAST of EWM23543.1 vs. NCBI_GenBank
Match: gi|860585985|ref|WP_048472904.1| (hypothetical protein [Mycobacterium chlorophenolicum] >gi|859091674|gb|KMO70148.1| hypothetical protein MCHLDSM_05036 [Mycobacterium chlorophenolicum])

HSP 1 Score: 60.8474 bits (146), Expect = 9.957e-9
Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 0
Query:   56 PEP-VGASILYEDD-FIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLR 132
            PEP VG S LY DD  I+L   +L ++ Y+FP G SK+IPL+ I+   + PLG  +  +++ WG   DF+RW P D+ R
Sbjct:    4 PEPTVGISNLYYDDGLIQLDREALTLRRYHFPSGTSKIIPLRDIRGYQVAPLG-LFLSRFRLWGT--DFRRWLPLDVNR 79          
BLAST of EWM23543.1 vs. NCBI_GenBank
Match: gi|693464781|gb|KGI71215.1| (hypothetical protein EU78_25925 [Mycobacterium rufum])

HSP 1 Score: 60.077 bits (144), Expect = 1.730e-8
Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = 0
Query:   56 PEP-VG-ASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLR 132
            PEP VG A++ Y+D  I+L   +L ++ Y+FP G SK+IPL+ I+   + PLG     +++ WG   DF+RW P D+ R
Sbjct:    4 PEPTVGIANLYYDDGLIQLDREALTLRRYHFPSGTSKIIPLRDIRDYQVAPLG-LLMSRFRLWG--TDFRRWLPLDVNR 79          
BLAST of EWM23543.1 vs. NCBI_GenBank
Match: gi|860423315|ref|WP_048421262.1| (hypothetical protein [Mycobacterium chubuense] >gi|859091412|gb|KMO69892.1| hypothetical protein MCHUDSM44219_05394 [Mycobacterium chubuense] >gi|1177063146|gb|ORA44331.1| hypothetical protein BST22_25475 [Mycobacterium chubuense])

HSP 1 Score: 59.6918 bits (143), Expect = 2.365e-8
Identity = 35/79 (44.30%), Postives = 49/79 (62.03%), Query Frame = 0
Query:   56 PEP-VGASILYEDD-FIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLR 132
            PEP VG S LY DD  I+L   +L ++ Y+FP G SK+IPL+ I+   + PLG     +++ WG   DF+RW P D+ R
Sbjct:    4 PEPTVGISNLYYDDGLIQLDREALTLRRYHFPSGTSKIIPLRDIRGYQVAPLG-LLLSRFRLWGT--DFRRWLPLDVNR 79          
BLAST of EWM23543.1 vs. NCBI_GenBank
Match: gi|504631057|ref|WP_014818159.1| (hypothetical protein [Mycobacterium chubuense] >gi|390618543|gb|AFM19693.1| hypothetical protein Mycch_5006 [Mycobacterium chubuense NBB4])

HSP 1 Score: 58.9214 bits (141), Expect = 4.062e-8
Identity = 29/72 (40.28%), Postives = 44/72 (61.11%), Query Frame = 0
Query:   61 ASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLR 132
             S+ Y+D  I+L   +L ++ Y+FP G SK+IPL+ I    + PLG   Q +++ WG   DF+RW P D+ R
Sbjct:    5 GSLYYDDGLIQLDREALTLRRYHFPSGTSKIIPLRDILGYRISPLGLVMQ-RFRLWG--TDFRRWLPLDVYR 73          
BLAST of EWM23543.1 vs. NCBI_GenBank
Match: gi|950025017|ref|WP_057150722.1| (hypothetical protein [Mycobacterium sp. Soil538] >gi|946377286|gb|KRE28061.1| hypothetical protein ASG82_10820 [Mycobacterium sp. Soil538])

HSP 1 Score: 58.9214 bits (141), Expect = 4.700e-8
Identity = 34/78 (43.59%), Postives = 49/78 (62.82%), Query Frame = 0
Query:   57 EP-VGASILYEDD-FIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLR 132
            EP VG S LY DD  I+L   +L ++ Y+FP G SK+IPL+ I+   + PLG  +  +++ WG   DF+RW P D+ R
Sbjct:    5 EPTVGISNLYYDDGLIQLDREALTLRRYHFPSGTSKIIPLRDIRGYQVAPLG-LFMSRFRLWG--TDFRRWLPLDVNR 79          
The following BLAST results are available for this feature:
BLAST of EWM23543.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104657|gb|EWM23543.1|7.778e-141100.00hypothetical protein Naga_100339g4 [Nannochloropsi... [more]
gi|585104656|gb|EWM23542.1|7.192e-92100.00hypothetical protein Naga_100339g4 [Nannochloropsi... [more]
gi|553180515|ref|XP_005853415.1|1.169e-4392.93hypothetical protein NGA_0223002 [Nannochloropsis ... [more]
gi|1056522337|ref|WP_067955847.1|5.632e-938.16hypothetical protein [Mycobacterium sp. NAZ190054]... [more]
gi|1178630464|ref|WP_083142791.1|8.033e-945.33hypothetical protein [Mycobacterium parafortuitum]... [more]
gi|860585985|ref|WP_048472904.1|9.957e-944.30hypothetical protein [Mycobacterium chlorophenolic... [more]
gi|693464781|gb|KGI71215.1|1.730e-841.77hypothetical protein EU78_25925 [Mycobacterium ruf... [more]
gi|860423315|ref|WP_048421262.1|2.365e-844.30hypothetical protein [Mycobacterium chubuense] >gi... [more]
gi|504631057|ref|WP_014818159.1|4.062e-840.28hypothetical protein [Mycobacterium chubuense] >gi... [more]
gi|950025017|ref|WP_057150722.1|4.700e-843.59hypothetical protein [Mycobacterium sp. Soil538] >... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7146rna7146Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications