rna7145, rna7145 (mRNA) Nannochloropsis gaditana

Overview
Namerna7145
Unique Namerna7145
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1004
Alignment locationCM002470.1:551938..554107 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100339g4.6964.mrna
Orig protein idgnl|cribi|Naga_100339g4.6964
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:551938..554107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100339g4gene6908Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7145rna7145-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23542.1cds7128Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7145 ID=rna7145|Name=rna7145|organism=Nannochloropsis gaditana|type=mRNA|length=1004bp
CCACCCACACACCTCCCTCCCTCCCTCCCTCCCTCAGGGCTACGTGGAAG
TCGACAAGGAGACACTCCAGCACGTCCGTTACCCGAACGTCTTCTCCCTT
GGCGATTGCTCCTCCCTCCCTACCAGCAAAAACCATTGCCGCCATCACCT
CTGAGGCGCCCGTCCTGGTCCACAATATGGGGAAGGTTATGAGGGGAGAG
AAGCCCACGGCCGTGTACGATGGCTACACGTCTTGTCCGCTGATCACGGG
GTACTCCTCCCTCCTCCTCGCTGAATTCAAGTACGGCGGGGAGGTAGCCG
AAACCTTCGGGCGCGTCATCGACCAGGCGGAACCTCGCTGGGCCTTCCTC
CAGCTGAAGAAGCACGTCTTCCCCTTTGCGTATTGGGAATTGTTCTTGCG
AGGCCGGTGGTTCGGGACGCGGGGCGTCATTCCTCCGTCGTTTGAGTGAG
GCTGAGGGTTGGGGAAATCATGAGGGGAGAGGGTGAGGAGGAAGGAGGGA
GGGAGGGAAAGAGGATGGAATGGAGGGGAGGAGAAATTTGAGAGAGGAAG
GGAGGATAGAAGAGGAGGTGTGCAGCGGTTTATGGAAGCCTAAAGGCGGT
GAATAATTTATAAAGAGACATGAATGAAGGAGGAACGAAAAGAAAGGGAA
GAAAGGGAGGGCGATGGCTAGGTGGTGTGGTAGCCTGAAGATGACTGGGA
GAAAAAAATGGAACGGTGGTGACGGGAAGGAGTGGTGGAATTTTGAAAAG
TTGGGTTCACTTGAGGGACCGAAGATCAAGAATAAACGAAAGATGATAAT
TATGAGAAATCAAAGCGTGGCAACCCTTGCTATTAGGAGGGTGTCGAGAC
AGCAGGTTTTGATTCCCGGTCTATGCGCGGGGATCCTCGCTTTCACTGCC
GTGCATGGCCCAAAATGGCTCAAGTGTCGACAAATGATAGATTTTAAGTA
TATTATTGCTAGATCCATGGGGTGTGTGAGGAGTTTACCATCACTTTCCC
TTTT
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protein sequence of rna7145

>rna7145-protein ID=rna7145-protein|Name=rna7145|organism=Nannochloropsis gaditana|type=polypeptide|length=177bp
MKVLLSRHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLNDNALQKPL
LDATRPEPVGASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKI
SLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQRAHFIEVDCGTWPLVA
FTLKESEDFYRSLSQAVAAVRTGKGII
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mRNA from alignment at CM002470.1:551938..554107-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7145 ID=rna7145|Name=rna7145|organism=Nannochloropsis gaditana|type=mRNA|length=2170bp|location=Sequence derived from alignment at CM002470.1:551938..554107- (Nannochloropsis gaditana)
AAGAAGCCACATCACAAGGCCAGAATTGAAGCTGCTTCCTCCCCCCTTTC
TCCCCACCCGATGCCTTTCAATATAACGGAGTCGATGAACGCACAGTATT
TCAGGGGGGGAGAGCCAGGGCTGTGCGATGGCTTGGGAGGTTCGGGCATG
CGGGTGAGGAGGAGGGAGGGCCCCGAACCTCCTCCTGAAGCTGTTGCAGA
TTATGCCTATGCCCCTTTAAGGGACATATACAAGGCAGGGGTGCCCAGGA
AAGTATGTCCGAGTGTCTGTATGCCTATTTGGGGATTTTTTTCGCAAGTT
TCGTGGGAAATTCGATTTGGACGTGGATTTGGTACTCGAACATGTTCAGT
TAAGCACCCGTCGATCATTCTTTGACTCCCTCCCTCCCCCGCCCCTAAAC
CCCCGGCTCAACAATATGAAAGTTCTACTCTCTCGACACTTGAGCATCAT
AATGTCCACTGTCAGTGCACTTTCAAGTTCCTCATCTGCGGCACCTCCCT
CGTCCAACGCCGTTGTTCCTGCCACTTATTCCAACCTCAATGACAACGCC
TTGCAGAAACCTTTGCTCGATGCTACTCGTCCCGAGCCCGTTGGGGCCTC
TATTCTTTACGAAGATGACTTCATAAAACTAACAGGGTCTTCACTTCGCA
TCAAATGGTATTATTTTCCCATCGGAGCCTCGAAGGTTATCCCGTTGAAG
AGCATTCAAAAGGTGAGCGACGGGGCCGGGGAAGTGTATACATGGGAACG
AGAGGAATATAGGCACAAACGCCCCAAAAGGTGGGTGAAAAGACGATTAT
GATATGAGTATATTTATTCTGACCTCCAGTCCCTTTCTTCAGTTAAATGT
CACGAAGTCAGTATACGGACCAAGACGAGTGTACGCAAAAACCTAATTGC
TCTTTCCCTGTCCAGATATCTTTAAGACCTTTAGGAAGCACGTGGCAAGG
CCAGTACAAACACTGGGGCATGGCCATCGATTTCAAACGCTGGTGGCCGA
GCGACATGTTGCGCCATCAACGTGTAGGGCGGTTATGGGGAAATGTTTCG
GAGGGATCGGTGCCGCATGGGTTTGGCTCGCTGAATGATGTCCAGCCAAC
AATCAAAAGCACCCGTGCCTTTCATGTGGGACTCTTGGCTTGTCCTTTTT
TTATCCTTTATCTATCCTTTATCTTGGGAAGTGTCCCTCCTTCATCACGT
CGTCCGGCTTGATTTCCCACCTCTCTCCCCCTAACGCTTTCCCTCGTGCC
CGACCCGTTACCGCTTCCGTTCATTTCCTCGCTTCCCTGCCTCCATCTCT
TTCCTCTCTCAGGCGCATTTTATCGAGGTCGATTGCGGAACATGGCCCCT
CGTCGCTTTTACGCTCAAAGAATCAGAGGATTTTTACCGTTCTCTCTCCC
AGGTTCGATCAGGGGGCGCAGACGAAAGGGGTTAAGAGCAAGGTTGCCTC
AAGTAGTTGGGCTATCATTGCAGTGAGAAAAGGGGAGAAAAGGTGGAGAA
ATGAATAGAGAAAGGAGAGAAATGCGGCATGAGTCTCTGCCAGACGGGGT
CAGTGTTGACTGTATTGAAGTTTCATCGCAGCATTTGAAACTGGCTTCTT
CCTCACGCATACGTAGGCCGTAGCAGCAGTCAGGACGGGTAAAGGAATAA
TCTAGCAGGCAGACGCGCAGAGTGGTAGTGCTCTGCCGGGAGTTCCCACT
TTGGAGACCCATTTTGGGCTGTATTTTGAAATGTACCATGTCTTCTGTAA
GCAAGCCAGGGGGCACAGGGAATAGGATTTTTAGCCCCTTCCACGACTTT
CCATCCTTATAAAATTGGCATCGGGAAAGTGCCGACTTATATCTGAAGAA
TTATAGAATGGGTTGAAAAATGGACAAGAGCAGGTTGAACACAACCTCCC
GCCACCGGGTCTGAAAATGTTTTAAAACCCGATCTTACGTACATCACAGA
GGCCCTACACAGCACTGTGGGTGGAACGAGCATGCTGTAAAAATGGGCTG
TCTTACACAACAACAAAAAATTAAACACGTTAGCATGCACCATGCAAAGG
CCATGAAAACTTGCAAGATCTGCGTGTGCGCTCTTCACGTTCTTATCGCT
CGCGGACGCCTCAAGAAGAAAGTCGAGACTTGTCCGTGATGTTCCACGAT
CGACCTGCGTCCGTGCATGC
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Coding sequence (CDS) from alignment at CM002470.1:551938..554107-

>rna7145 ID=rna7145|Name=rna7145|organism=Nannochloropsis gaditana|type=CDS|length=2136bp|location=Sequence derived from alignment at CM002470.1:551938..554107- (Nannochloropsis gaditana)
GCCGTAGCAGCAGTCAGGACGGGTAAAGGAATAATCTAGGCGCATTTTAT
CGAGGTCGATTGCGGAACATGGCCCCTCGTCGCTTTTACGCTCAAAGAAT
CAGAGGATTTTTACCGTTCTCTCTCCCAGATATCTTTAAGACCTTTAGGA
AGCACGTGGCAAGGCCAGTACAAACACTGGGGCATGGCCATCGATTTCAA
ACGCTGGTGGCCGAGCGACATGTTGCGCCATCAACGTATGAAAGTTCTAC
TCTCTCGACACTTGAGCATCATAATGTCCACTGTCAGTGCACTTTCAAGT
TCCTCATCTGCGGCACCTCCCTCGTCCAACGCCGTTGTTCCTGCCACTTA
TTCCAACCTCAATGACAACGCCTTGCAGAAACCTTTGCTCGATGCTACTC
GTCCCGAGCCCGTTGGGGCCTCTATTCTTTACGAAGATGACTTCATAAAA
CTAACAGGGTCTTCACTTCGCATCAAATGGTATTATTTTCCCATCGGAGC
CTCGAAGGTTATCCCGTTGAAGAGCATTCAAAAGGCCGTAGCAGCAGTCA
GGACGGGTAAAGGAATAATCTAGGCGCATTTTATCGAGGTCGATTGCGGA
ACATGGCCCCTCGTCGCTTTTACGCTCAAAGAATCAGAGGATTTTTACCG
TTCTCTCTCCCAGATATCTTTAAGACCTTTAGGAAGCACGTGGCAAGGCC
AGTACAAACACTGGGGCATGGCCATCGATTTCAAACGCTGGTGGCCGAGC
GACATGTTGCGCCATCAACGTATGAAAGTTCTACTCTCTCGACACTTGAG
CATCATAATGTCCACTGTCAGTGCACTTTCAAGTTCCTCATCTGCGGCAC
CTCCCTCGTCCAACGCCGTTGTTCCTGCCACTTATTCCAACCTCAATGAC
AACGCCTTGCAGAAACCTTTGCTCGATGCTACTCGTCCCGAGCCCGTTGG
GGCCTCTATTCTTTACGAAGATGACTTCATAAAACTAACAGGGTCTTCAC
TTCGCATCAAATGGTATTATTTTCCCATCGGAGCCTCGAAGGTTATCCCG
TTGAAGAGCATTCAAAAGGCCGTAGCAGCAGTCAGGACGGGTAAAGGAAT
AATCTAGGCGCATTTTATCGAGGTCGATTGCGGAACATGGCCCCTCGTCG
CTTTTACGCTCAAAGAATCAGAGGATTTTTACCGTTCTCTCTCCCAGATA
TCTTTAAGACCTTTAGGAAGCACGTGGCAAGGCCAGTACAAACACTGGGG
CATGGCCATCGATTTCAAACGCTGGTGGCCGAGCGACATGTTGCGCCATC
AACGTATGAAAGTTCTACTCTCTCGACACTTGAGCATCATAATGTCCACT
GTCAGTGCACTTTCAAGTTCCTCATCTGCGGCACCTCCCTCGTCCAACGC
CGTTGTTCCTGCCACTTATTCCAACCTCAATGACAACGCCTTGCAGAAAC
CTTTGCTCGATGCTACTCGTCCCGAGCCCGTTGGGGCCTCTATTCTTTAC
GAAGATGACTTCATAAAACTAACAGGGTCTTCACTTCGCATCAAATGGTA
TTATTTTCCCATCGGAGCCTCGAAGGTTATCCCGTTGAAGAGCATTCAAA
AGGCCGTAGCAGCAGTCAGGACGGGTAAAGGAATAATCTAGGCGCATTTT
ATCGAGGTCGATTGCGGAACATGGCCCCTCGTCGCTTTTACGCTCAAAGA
ATCAGAGGATTTTTACCGTTCTCTCTCCCAGATATCTTTAAGACCTTTAG
GAAGCACGTGGCAAGGCCAGTACAAACACTGGGGCATGGCCATCGATTTC
AAACGCTGGTGGCCGAGCGACATGTTGCGCCATCAACGTATGAAAGTTCT
ACTCTCTCGACACTTGAGCATCATAATGTCCACTGTCAGTGCACTTTCAA
GTTCCTCATCTGCGGCACCTCCCTCGTCCAACGCCGTTGTTCCTGCCACT
TATTCCAACCTCAATGACAACGCCTTGCAGAAACCTTTGCTCGATGCTAC
TCGTCCCGAGCCCGTTGGGGCCTCTATTCTTTACGAAGATGACTTCATAA
AACTAACAGGGTCTTCACTTCGCATCAAATGGTATTATTTTCCCATCGGA
GCCTCGAAGGTTATCCCGTTGAAGAGCATTCAAAAG
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Synonyms
Publications