EWM23542.1, cds7128 (CDS) Nannochloropsis gaditana

Overview
NameEWM23542.1
Unique Namecds7128
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:553396..553692 -
Alignment locationCM002470.1:553085..553192 -
Alignment locationCM002470.1:552706..552795 -
Alignment locationCM002470.1:552453..552491 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23542.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100339g4.6964.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:553396..553692 -
CM002470.1supercontigCM002470.1:553085..553192 -
CM002470.1supercontigCM002470.1:552706..552795 -
CM002470.1supercontigCM002470.1:552453..552491 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM23542.1 vs. NCBI_GenBank
Match: gi|585104656|gb|EWM23542.1| (hypothetical protein Naga_100339g4 [Nannochloropsis gaditana])

HSP 1 Score: 363.614 bits (932), Expect = 3.128e-127
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0
Query:    1 MKVLLSRHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLNDNALQKPLLDATRPEPVGASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQRAHFIEVDCGTWPLVAFTLKESEDFYRSLSQAVAAVRTGKGII 177
            MKVLLSRHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLNDNALQKPLLDATRPEPVGASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQRAHFIEVDCGTWPLVAFTLKESEDFYRSLSQAVAAVRTGKGII
Sbjct:    1 MKVLLSRHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLNDNALQKPLLDATRPEPVGASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQRAHFIEVDCGTWPLVAFTLKESEDFYRSLSQAVAAVRTGKGII 177          
BLAST of EWM23542.1 vs. NCBI_GenBank
Match: gi|585104657|gb|EWM23543.1| (hypothetical protein Naga_100339g4 [Nannochloropsis gaditana])

HSP 1 Score: 275.018 bits (702), Expect = 6.462e-92
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
Query:    1 MKVLLSRHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLNDNALQKPLLDATRPEPVGASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQR 135
            MKVLLSRHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLNDNALQKPLLDATRPEPVGASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQR
Sbjct:    1 MKVLLSRHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLNDNALQKPLLDATRPEPVGASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQR 135          
BLAST of EWM23542.1 vs. NCBI_GenBank
Match: gi|553180515|ref|XP_005853415.1| (hypothetical protein NGA_0223002 [Nannochloropsis gaditana CCMP526] >gi|553186192|ref|XP_005854376.1| hypothetical protein NGA_0223001 [Nannochloropsis gaditana CCMP526] >gi|422294682|gb|EKU21982.1| hypothetical protein NGA_0223001 [Nannochloropsis gaditana CCMP526] >gi|422295645|gb|EKU22944.1| hypothetical protein NGA_0223002 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 151.754 bits (382), Expect = 2.240e-44
Identity = 92/99 (92.93%), Postives = 93/99 (93.94%), Query Frame = 0
Query:    1 MKVLLSRHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLNDNALQKPLLDATRPEPVGASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQK 99
            MKVL  RHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLN NALQKPLLDAT PEPVGASILYEDDF+KLT SSL IKWYYFPIGASKVIPLKSIQK
Sbjct:    1 MKVLPFRHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLNHNALQKPLLDATCPEPVGASILYEDDFVKLTESSLCIKWYYFPIGASKVIPLKSIQK 99          
BLAST of EWM23542.1 vs. NCBI_GenBank
Match: gi|504631057|ref|WP_014818159.1| (hypothetical protein [Mycobacterium chubuense] >gi|390618543|gb|AFM19693.1| hypothetical protein Mycch_5006 [Mycobacterium chubuense NBB4])

HSP 1 Score: 72.4034 bits (176), Expect = 2.464e-13
Identity = 39/110 (35.45%), Postives = 62/110 (56.36%), Query Frame = 0
Query:   61 ASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQRAHFIEVDC-GTWPLVAFTLKESEDFYRSLSQAVAA 169
             S+ Y+D  I+L   +L ++ Y+FP G SK+IPL+ I    + PLG   Q +++ WG   DF+RW P D+ R  ++  + +D  G +P  A T K+ E F   L + + A
Sbjct:    5 GSLYYDDGLIQLDREALTLRRYHFPSGTSKIIPLRDILGYRISPLGLVMQ-RFRLWG--TDFRRWLPLDVYRPLKSTLVTLDVRGAYPNPACTPKDPERFREVLDELLGA 111          
BLAST of EWM23542.1 vs. NCBI_GenBank
Match: gi|764943373|ref|WP_044513868.1| (hypothetical protein [Mycobacterium septicum])

HSP 1 Score: 72.0182 bits (175), Expect = 3.490e-13
Identity = 39/105 (37.14%), Postives = 60/105 (57.14%), Query Frame = 0
Query:   65 YEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQRAHFIEVDC-GTWPLVAFTLKESEDFYRSLSQAVA 168
            Y+D  I+L   ++ ++ Y+FP G SKVIPL+ I+      LG  W  +++ WG + D +RW P D+ R  R+  I +D  GT+P  AFT    +DF  SL + + 
Sbjct:    8 YDDGLIQLDREAITLRRYHFPSGTSKVIPLRDIRSYKAESLG-LWMQRFRLWG-STDLRRWLPLDVHRPLRSTLITLDVPGTYPKPAFTPARPDDFVASLDELLG 110          
BLAST of EWM23542.1 vs. NCBI_GenBank
Match: gi|1150829252|ref|WP_078022349.1| (hypothetical protein [Mycobacterium litorale] >gi|1150434497|gb|AQT83153.1| hypothetical protein B1R94_27360 [Mycobacterium litorale])

HSP 1 Score: 71.633 bits (174), Expect = 3.967e-13
Identity = 38/105 (36.19%), Postives = 61/105 (58.10%), Query Frame = 0
Query:   65 YEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQRAHFIEVDC-GTWPLVAFTLKESEDFYRSLSQAVA 168
            Y+D  ++L   +L ++ Y+FP G SKVIP++SI+     PLG  W  +++ WG + D +RW P DM R  ++  I +D  GT+P  AFT  +  +F   L + + 
Sbjct:    9 YDDGLVQLDRHALTLRRYHFPSGTSKVIPVRSIRGYKAEPLG-MWMQRFRLWGSS-DLRRWLPLDMYRPVKSTLITLDVPGTYPSPAFTPVKPREFVAVLDEVLG 111          
BLAST of EWM23542.1 vs. NCBI_GenBank
Match: gi|490017368|ref|WP_003919901.1| (hypothetical protein [Mycobacterium xenopi] >gi|383337587|gb|EID15963.1| hypothetical protein MXEN_05790 [Mycobacterium xenopi RIVM700367])

HSP 1 Score: 71.633 bits (174), Expect = 4.810e-13
Identity = 41/112 (36.61%), Postives = 64/112 (57.14%), Query Frame = 0
Query:   61 ASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQRAHFIEVDC-GTWPLVAFTLKESEDFYRSLSQAVAAVR 171
            +S  Y+D  I+L   ++ ++ Y+FP G SKVIPLK+I+     PLG  W  +++ WG + D +RW P D+ R  ++  I +D  GT P  AFT  +  +F   L   ++ VR
Sbjct:    5 SSDCYDDGLIQLDREAITLRRYHFPSGTSKVIPLKTIRGYKAEPLGLFWH-RFRIWGSS-DLRRWLPLDVRRPLKSTLITLDVPGTRPRPAFTPAKPREFTALLDTLLSEVR 114          
BLAST of EWM23542.1 vs. NCBI_GenBank
Match: gi|1184636767|ref|WP_085198034.1| (hypothetical protein [Mycobacterium xenopi] >gi|576463212|gb|EUA56810.1| hypothetical protein I553_8864 [Mycobacterium xenopi 4042] >gi|1183194677|gb|ORX10850.1| hypothetical protein AWC32_17485 [Mycobacterium xenopi])

HSP 1 Score: 71.2478 bits (173), Expect = 5.953e-13
Identity = 41/112 (36.61%), Postives = 64/112 (57.14%), Query Frame = 0
Query:   61 ASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQRAHFIEVDC-GTWPLVAFTLKESEDFYRSLSQAVAAVR 171
            +S  Y+D  I+L   ++ ++ Y+FP G SKVIPLK+I+     PLG  W  +++ WG + D +RW P D+ R  ++  I +D  GT P  AFT  +  +F   L   ++ VR
Sbjct:    5 SSDCYDDGLIQLDREAITLRRYHFPSGTSKVIPLKTIRGYKAEPLGLFWH-RFRIWGSS-DLRRWLPLDVSRPLKSTLITLDVPGTRPRPAFTPAKPREFTALLDTLLSEVR 114          
BLAST of EWM23542.1 vs. NCBI_GenBank
Match: gi|693464781|gb|KGI71215.1| (hypothetical protein EU78_25925 [Mycobacterium rufum])

HSP 1 Score: 71.2478 bits (173), Expect = 7.314e-13
Identity = 43/116 (37.07%), Postives = 66/116 (56.90%), Query Frame = 0
Query:   56 PEP-VG-ASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQRAHFIEVDC-GTWPLVAFTLKESEDFYRSLSQAVA 168
            PEP VG A++ Y+D  I+L   +L ++ Y+FP G SK+IPL+ I+   + PLG     +++ WG   DF+RW P D+ R  ++  I +D  GT+P  A T     +F   L Q + 
Sbjct:    4 PEPTVGIANLYYDDGLIQLDREALTLRRYHFPSGTSKIIPLRDIRDYQVAPLG-LLMSRFRLWG--TDFRRWLPLDVNRPLKSTLITLDVRGTYPQPACTPVHPREFIDVLDQLLG 116          
BLAST of EWM23542.1 vs. NCBI_GenBank
Match: gi|1055514860|ref|WP_067173483.1| (MULTISPECIES: hypothetical protein [Mycobacterium] >gi|1038415982|gb|OBJ68465.1| hypothetical protein A5626_01035 [Mycobacterium sp. 1165549.7] >gi|1177115498|gb|ORA94961.1| hypothetical protein BST31_06325 [Mycobacterium marseillense])

HSP 1 Score: 70.8626 bits (172), Expect = 8.080e-13
Identity = 40/108 (37.04%), Postives = 63/108 (58.33%), Query Frame = 0
Query:   65 YEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQRAHFIEVDC-GTWPLVAFTLKESEDFYRSLSQAVAAVR 171
            Y+D  ++L  +++ ++ Y+FP G SKVI L SI+      LG   Q +++ WG + DF+RW P DM R  R+  I +D  GTWP  AFT   +++F   L + ++  R
Sbjct:   11 YDDGLVQLDRTAITLRRYHFPSGTSKVIALDSIRGYKAENLGLVTQ-RFRIWGSS-DFRRWLPLDMQRPFRSTLITLDVPGTWPSPAFTPARADEFIALLDELLSGRR 116          
The following BLAST results are available for this feature:
BLAST of EWM23542.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104656|gb|EWM23542.1|3.128e-127100.00hypothetical protein Naga_100339g4 [Nannochloropsi... [more]
gi|585104657|gb|EWM23543.1|6.462e-92100.00hypothetical protein Naga_100339g4 [Nannochloropsi... [more]
gi|553180515|ref|XP_005853415.1|2.240e-4492.93hypothetical protein NGA_0223002 [Nannochloropsis ... [more]
gi|504631057|ref|WP_014818159.1|2.464e-1335.45hypothetical protein [Mycobacterium chubuense] >gi... [more]
gi|764943373|ref|WP_044513868.1|3.490e-1337.14hypothetical protein [Mycobacterium septicum][more]
gi|1150829252|ref|WP_078022349.1|3.967e-1336.19hypothetical protein [Mycobacterium litorale] >gi|... [more]
gi|490017368|ref|WP_003919901.1|4.810e-1336.61hypothetical protein [Mycobacterium xenopi] >gi|38... [more]
gi|1184636767|ref|WP_085198034.1|5.953e-1336.61hypothetical protein [Mycobacterium xenopi] >gi|57... [more]
gi|693464781|gb|KGI71215.1|7.314e-1337.07hypothetical protein EU78_25925 [Mycobacterium ruf... [more]
gi|1055514860|ref|WP_067173483.1|8.080e-1337.04MULTISPECIES: hypothetical protein [Mycobacterium]... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7145rna7145Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications