EWM23542.1, cds7128 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23542.1 vs. NCBI_GenBank
Match: gi|585104656|gb|EWM23542.1| (hypothetical protein Naga_100339g4 [Nannochloropsis gaditana]) HSP 1 Score: 363.614 bits (932), Expect = 3.128e-127 Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0
Query: 1 MKVLLSRHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLNDNALQKPLLDATRPEPVGASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQRAHFIEVDCGTWPLVAFTLKESEDFYRSLSQAVAAVRTGKGII 177
MKVLLSRHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLNDNALQKPLLDATRPEPVGASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQRAHFIEVDCGTWPLVAFTLKESEDFYRSLSQAVAAVRTGKGII
Sbjct: 1 MKVLLSRHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLNDNALQKPLLDATRPEPVGASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQRAHFIEVDCGTWPLVAFTLKESEDFYRSLSQAVAAVRTGKGII 177
BLAST of EWM23542.1 vs. NCBI_GenBank
Match: gi|585104657|gb|EWM23543.1| (hypothetical protein Naga_100339g4 [Nannochloropsis gaditana]) HSP 1 Score: 275.018 bits (702), Expect = 6.462e-92 Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
Query: 1 MKVLLSRHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLNDNALQKPLLDATRPEPVGASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQR 135
MKVLLSRHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLNDNALQKPLLDATRPEPVGASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQR
Sbjct: 1 MKVLLSRHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLNDNALQKPLLDATRPEPVGASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQR 135
BLAST of EWM23542.1 vs. NCBI_GenBank
Match: gi|553180515|ref|XP_005853415.1| (hypothetical protein NGA_0223002 [Nannochloropsis gaditana CCMP526] >gi|553186192|ref|XP_005854376.1| hypothetical protein NGA_0223001 [Nannochloropsis gaditana CCMP526] >gi|422294682|gb|EKU21982.1| hypothetical protein NGA_0223001 [Nannochloropsis gaditana CCMP526] >gi|422295645|gb|EKU22944.1| hypothetical protein NGA_0223002 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 151.754 bits (382), Expect = 2.240e-44 Identity = 92/99 (92.93%), Postives = 93/99 (93.94%), Query Frame = 0
Query: 1 MKVLLSRHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLNDNALQKPLLDATRPEPVGASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQK 99
MKVL RHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLN NALQKPLLDAT PEPVGASILYEDDF+KLT SSL IKWYYFPIGASKVIPLKSIQK
Sbjct: 1 MKVLPFRHLSIIMSTVSALSSSSSAAPPSSNAVVPATYSNLNHNALQKPLLDATCPEPVGASILYEDDFVKLTESSLCIKWYYFPIGASKVIPLKSIQK 99
BLAST of EWM23542.1 vs. NCBI_GenBank
Match: gi|504631057|ref|WP_014818159.1| (hypothetical protein [Mycobacterium chubuense] >gi|390618543|gb|AFM19693.1| hypothetical protein Mycch_5006 [Mycobacterium chubuense NBB4]) HSP 1 Score: 72.4034 bits (176), Expect = 2.464e-13 Identity = 39/110 (35.45%), Postives = 62/110 (56.36%), Query Frame = 0
Query: 61 ASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQRAHFIEVDC-GTWPLVAFTLKESEDFYRSLSQAVAA 169
S+ Y+D I+L +L ++ Y+FP G SK+IPL+ I + PLG Q +++ WG DF+RW P D+ R ++ + +D G +P A T K+ E F L + + A
Sbjct: 5 GSLYYDDGLIQLDREALTLRRYHFPSGTSKIIPLRDILGYRISPLGLVMQ-RFRLWG--TDFRRWLPLDVYRPLKSTLVTLDVRGAYPNPACTPKDPERFREVLDELLGA 111
BLAST of EWM23542.1 vs. NCBI_GenBank
Match: gi|764943373|ref|WP_044513868.1| (hypothetical protein [Mycobacterium septicum]) HSP 1 Score: 72.0182 bits (175), Expect = 3.490e-13 Identity = 39/105 (37.14%), Postives = 60/105 (57.14%), Query Frame = 0
Query: 65 YEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQRAHFIEVDC-GTWPLVAFTLKESEDFYRSLSQAVA 168
Y+D I+L ++ ++ Y+FP G SKVIPL+ I+ LG W +++ WG + D +RW P D+ R R+ I +D GT+P AFT +DF SL + +
Sbjct: 8 YDDGLIQLDREAITLRRYHFPSGTSKVIPLRDIRSYKAESLG-LWMQRFRLWG-STDLRRWLPLDVHRPLRSTLITLDVPGTYPKPAFTPARPDDFVASLDELLG 110
BLAST of EWM23542.1 vs. NCBI_GenBank
Match: gi|1150829252|ref|WP_078022349.1| (hypothetical protein [Mycobacterium litorale] >gi|1150434497|gb|AQT83153.1| hypothetical protein B1R94_27360 [Mycobacterium litorale]) HSP 1 Score: 71.633 bits (174), Expect = 3.967e-13 Identity = 38/105 (36.19%), Postives = 61/105 (58.10%), Query Frame = 0
Query: 65 YEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQRAHFIEVDC-GTWPLVAFTLKESEDFYRSLSQAVA 168
Y+D ++L +L ++ Y+FP G SKVIP++SI+ PLG W +++ WG + D +RW P DM R ++ I +D GT+P AFT + +F L + +
Sbjct: 9 YDDGLVQLDRHALTLRRYHFPSGTSKVIPVRSIRGYKAEPLG-MWMQRFRLWGSS-DLRRWLPLDMYRPVKSTLITLDVPGTYPSPAFTPVKPREFVAVLDEVLG 111
BLAST of EWM23542.1 vs. NCBI_GenBank
Match: gi|490017368|ref|WP_003919901.1| (hypothetical protein [Mycobacterium xenopi] >gi|383337587|gb|EID15963.1| hypothetical protein MXEN_05790 [Mycobacterium xenopi RIVM700367]) HSP 1 Score: 71.633 bits (174), Expect = 4.810e-13 Identity = 41/112 (36.61%), Postives = 64/112 (57.14%), Query Frame = 0
Query: 61 ASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQRAHFIEVDC-GTWPLVAFTLKESEDFYRSLSQAVAAVR 171
+S Y+D I+L ++ ++ Y+FP G SKVIPLK+I+ PLG W +++ WG + D +RW P D+ R ++ I +D GT P AFT + +F L ++ VR
Sbjct: 5 SSDCYDDGLIQLDREAITLRRYHFPSGTSKVIPLKTIRGYKAEPLGLFWH-RFRIWGSS-DLRRWLPLDVRRPLKSTLITLDVPGTRPRPAFTPAKPREFTALLDTLLSEVR 114
BLAST of EWM23542.1 vs. NCBI_GenBank
Match: gi|1184636767|ref|WP_085198034.1| (hypothetical protein [Mycobacterium xenopi] >gi|576463212|gb|EUA56810.1| hypothetical protein I553_8864 [Mycobacterium xenopi 4042] >gi|1183194677|gb|ORX10850.1| hypothetical protein AWC32_17485 [Mycobacterium xenopi]) HSP 1 Score: 71.2478 bits (173), Expect = 5.953e-13 Identity = 41/112 (36.61%), Postives = 64/112 (57.14%), Query Frame = 0
Query: 61 ASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQRAHFIEVDC-GTWPLVAFTLKESEDFYRSLSQAVAAVR 171
+S Y+D I+L ++ ++ Y+FP G SKVIPLK+I+ PLG W +++ WG + D +RW P D+ R ++ I +D GT P AFT + +F L ++ VR
Sbjct: 5 SSDCYDDGLIQLDREAITLRRYHFPSGTSKVIPLKTIRGYKAEPLGLFWH-RFRIWGSS-DLRRWLPLDVSRPLKSTLITLDVPGTRPRPAFTPAKPREFTALLDTLLSEVR 114
BLAST of EWM23542.1 vs. NCBI_GenBank
Match: gi|693464781|gb|KGI71215.1| (hypothetical protein EU78_25925 [Mycobacterium rufum]) HSP 1 Score: 71.2478 bits (173), Expect = 7.314e-13 Identity = 43/116 (37.07%), Postives = 66/116 (56.90%), Query Frame = 0
Query: 56 PEP-VG-ASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQRAHFIEVDC-GTWPLVAFTLKESEDFYRSLSQAVA 168
PEP VG A++ Y+D I+L +L ++ Y+FP G SK+IPL+ I+ + PLG +++ WG DF+RW P D+ R ++ I +D GT+P A T +F L Q +
Sbjct: 4 PEPTVGIANLYYDDGLIQLDREALTLRRYHFPSGTSKIIPLRDIRDYQVAPLG-LLMSRFRLWG--TDFRRWLPLDVNRPLKSTLITLDVRGTYPQPACTPVHPREFIDVLDQLLG 116
BLAST of EWM23542.1 vs. NCBI_GenBank
Match: gi|1055514860|ref|WP_067173483.1| (MULTISPECIES: hypothetical protein [Mycobacterium] >gi|1038415982|gb|OBJ68465.1| hypothetical protein A5626_01035 [Mycobacterium sp. 1165549.7] >gi|1177115498|gb|ORA94961.1| hypothetical protein BST31_06325 [Mycobacterium marseillense]) HSP 1 Score: 70.8626 bits (172), Expect = 8.080e-13 Identity = 40/108 (37.04%), Postives = 63/108 (58.33%), Query Frame = 0
Query: 65 YEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQRAHFIEVDC-GTWPLVAFTLKESEDFYRSLSQAVAAVR 171
Y+D ++L +++ ++ Y+FP G SKVI L SI+ LG Q +++ WG + DF+RW P DM R R+ I +D GTWP AFT +++F L + ++ R
Sbjct: 11 YDDGLVQLDRTAITLRRYHFPSGTSKVIALDSIRGYKAENLGLVTQ-RFRIWGSS-DFRRWLPLDMQRPFRSTLITLDVPGTWPSPAFTPARADEFIALLDELLSGRR 116 The following BLAST results are available for this feature:
BLAST of EWM23542.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|