rna7144, rna7144 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7144
Unique Name	rna7144
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	549
Alignment location	CM002470.1:548106..549535 -

Link to JBrowse

Properties


Property Name	Value
Product	sulfide-quinone oxidoreductase
Orig transcript id	gnl\|cribi\|Naga_101203g1.3193.mrna
Orig protein id	gnl\|cribi\|Naga_101203g1.3193
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:548106..549535 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101203g1	gene6907	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7144	rna7144-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23546.1	cds7127	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:548106..549535-
coding sequence from alignment at CM002470.1:548106..549535-

mRNA sequence

>rna7144 ID=rna7144|Name=rna7144|organism=Nannochloropsis gaditana|type=mRNA|length=549bp
ATGGCGCGGCACCGGCGGAGAGAGGACCGGGGGTCTCCCTCCATCTTCCC
TTCGAGCTCGGCTTTACTCCTCTTCCTCTCTTGCCTTTGTGACAATTCTC
GCGCTTTCTGTCTTTATCAAAGACCAGCACACCATTTTACCTCCTTCTTG
CTACATGGGCGACAACCTTTCTCTTCCTTCCCCCTCGCCTCCTCCTTCTC
CCCCTCCGCCTCCCTCCCTACCTCCTCTCTGGCCTCCTCCACATCCCCTG
CGGAGCCCCTTGACAACGTGCGCGAGACCATCCAAGTGCGGTTTATCAAC
ACGCCAGACGGAAACGATGTGGTCACCACGGCACAAGAGGGAGACAATTT
GATGAAGGTCGGAGACAAAGCGGGCATCTCCATCCCTCGAGCCTGCTGCA
CGGGCCTCTGCGGCACCTGTACCAGCGATTTGCGAGACCCTTCCTATACG
TTCAAGGGGGAAGACAAGCCTGCCGGCGCCCGCGAAGGCTATCAGACCAT
CCGCGCGTGCTCCACGCAGCCTCTCGCACGGCGTCTCAGCAGTGGATAG

protein sequence of rna7144

>rna7144-protein ID=rna7144-protein|Name=rna7144|organism=Nannochloropsis gaditana|type=polypeptide|length=90bp
MGKVMRGEKPTAVYDGYTSCPLITGYSSLLLAEFKYGGEVAETFGRVIDQ
AEPRWAFLQLKKHVFPFAYWELFLRGRWFGTRGVIPPSFE

mRNA from alignment at CM002470.1:548106..549535-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7144 ID=rna7144|Name=rna7144|organism=Nannochloropsis gaditana|type=mRNA|length=1430bp|location=Sequence derived from alignment at CM002470.1:548106..549535- (Nannochloropsis gaditana)
CCACCCACACACCTCCCTCCCTCCCTCCCTCCCTCAGGGCTACGTGGAAG
TCGACAAGGAGACACTCCAGCACGTCCGTTACCCGAACGTCTTCTCCCTT
GGCGATTGCTCCTCCCTCCCTACCAGCAAAAACCATTGCCGCCATCACCT
CTGTGCGTCCCCCCTCCCTCCCTCCCTTCGCCCCTCCTCCCTCCCTCCCT
TCCCTTCATCTATCCGCTCCAATTCACCCGACACGCATCGCCAATCAATC
TCCTTCATCCACTTTCTTCCCCTTCCTCCCTCCCTCCCTCTCTCCCCTTC
TCCCTCCCTCCTTTCCTGATACTGAGGTACCCCTCATTATTCAATAGAAG
CCTTATTGACTCCTTTCCTCCTTTCTCCCTCCCTCTCTTTCTCCCTCTCT
TTCTCCCTCCCTTTCCCCCCCTCCCTCCGTCACTCCCTTCTTCCTTCCTG
CCCCATCAGGAGGCGCCCGTCCTGGTCCACAATATGGGGAAGGTTATGAG
GGGAGAGAAGCCCACGGCCGTGTACGATGGCTACACGTCTTGTCCGCTGA
TCACGGTGAGGACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGCCCCCACGTTCCAGCACCCGTCCTATCCTCACCACATGCTCCTTC
ACTTCCTCCCCATCACTTGCTCAGGGGTACTCCTCCCTCCTCCTCGCTGA
ATTCAAGTACGGCGGGGAGGTAGCCGAAACCTTCGGGCGCGTCATCGACC
AGGCGGAACCTCGCTGGGCCTTCCTCCAGCTGAAGAAGCACGTCTTCCCC
TTTGCGTATTGGGAATTGTTCTTGCGAGGCCGGTGGTTCGGGACGCGGGG
CGTCATTCCTCCGTCGTTTGAGTGAGGCTGAGGGTTGGGGAAATCATGAG
GGGAGAGGGTGAGGAGGAAGGAGGGAGGGAGGGAAAGAGGATGGAATGGA
GGGGAGGAGAAATTTGAGAGAGGAAGGGAGGATAGAAGAGGAGGTGTGCA
GCGGTTTATGGAAGCCTAAAGGCGGTGAATAATTTATAAAGAGACATGAA
TGAAGGAGGAACGAAAAGAAAGGGAAGAAAGGGAGGGCGATGGCTAGGTG
GTGTGGTAGCCTGAAGATGACTGGGAGAAAAAAATGGAACGGTGGTGACG
GGAAGGAGTGGTGGAATTTTGAAAAGTTGGGTTCACTTGAGGGACCGAAG
ATCAAGAATAAACGAAAGATGATAATTATGAGAAATCAAAGCGTGGCAAC
CCTTGCTATTAGGAGGGTGTCGAGACAGCAGGTTTTGATTCCCGGTCTAT
GCGCGGGGATCCTCGCTTTCACTGCCGTGCATGGCCCAAAATGGCTCAAG
TGTCGACAAATGATAGATTTTAAGTATATTATTGCTAGATCCATGGGGTG
TGTGAGGAGTTTACCATCACTTTCCCTTTT

Coding sequence (CDS) from alignment at CM002470.1:548106..549535-

>rna7144 ID=rna7144|Name=rna7144|organism=Nannochloropsis gaditana|type=CDS|length=546bp|location=Sequence derived from alignment at CM002470.1:548106..549535- (Nannochloropsis gaditana)
GGGTACTCCTCCCTCCTCCTCGCTGAATTCAAGTACGGCGGGGAGGTAGC
CGAAACCTTCGGGCGCGTCATCGACCAGGCGGAACCTCGCTGGGCCTTCC
TCCAGCTGAAGAAGCACGTCTTCCCCTTTGCGTATTGGGAATTGTTCTTG
CGAGGCCGGTGGTTCGGGACGCGGGGCGTCATTCCTCCGTCGTTTGAGTG
AATGGGGAAGGTTATGAGGGGAGAGAAGCCCACGGCCGTGTACGATGGCT
ACACGTCTTGTCCGCTGATCACGGGGTACTCCTCCCTCCTCCTCGCTGAA
TTCAAGTACGGCGGGGAGGTAGCCGAAACCTTCGGGCGCGTCATCGACCA
GGCGGAACCTCGCTGGGCCTTCCTCCAGCTGAAGAAGCACGTCTTCCCCT
TTGCGTATTGGGAATTGTTCTTGCGAGGCCGGTGGTTCGGGACGCGGGGC
GTCATTCCTCCGTCGTTTGAGTGAATGGGGAAGGTTATGAGGGGAGAGAA
GCCCACGGCCGTGTACGATGGCTACACGTCTTGTCCGCTGATCACG

Synonyms

Publications