rna7142, rna7142 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7142
Unique Name	rna7142
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2193
Alignment location	CM002470.1:545150..546222 -

Link to JBrowse

Properties


Property Name	Value
Product	Heat shock protein DnaJ, cysteine-rich domain protein
Orig transcript id	gnl\|cribi\|Naga_100689g1.8725.mrna
Orig protein id	gnl\|cribi\|Naga_100689g1.8725
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:545150..546222 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100689g1	gene6905	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7142	rna7142-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23548.1	cds7125	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:545150..546222-
coding sequence from alignment at CM002470.1:545150..546222-

mRNA sequence

>rna7142 ID=rna7142|Name=rna7142|organism=Nannochloropsis gaditana|type=mRNA|length=2193bp
ATGTCAAAGGCCAACACCACCACGGCCTCCCCGTCGGACCATTCCGAAGT
GACAGGCGGGGTTCTTGCTGGCGCCAATCCGCTCCATTCTACAGTTGCCC
TTTTCCTTCTCCAAGTCGTCATCATCATGGCTACCACGCGAATCCTAGCC
TACGGGTTACATTACTTGAAACAACCGAGGGTGATTGCTGAAATTCTGGC
GGGTATCCTCTTGGGCCCATCAGGAATGGGCAACATTCCCGGCTGGTTGT
CCAACGTCTTCCCCGACAGGTCCCTCCCCTTCTTGACACTGGCAGCTAAT
GTTGGCCTTATTCTATACATGTTTTTAGTGGGCTTGGAGCTCACACCCGG
GGCGCTTTGGACGAACGCGAGACAGTCAGTCCTGATTAGCACGGTCGGGA
TCGTCTTTCCTTTCCTTTTGGGCTGCGGGGGGAGCGTTGTTCTCTACCGT
CACCGAAAAAACACGGAAGAGGTGCCCTTCTCCTCGTTTCTGCTCTTTAC
CGGGCTGAGCTTGTCCATCACCGCTTTCCCAATATTGGCACGGATATTGA
CGGATCTCAACCTGATGGAGACGGAGGTGGGCGTGATGACGATAGGCGCC
GCCGCCTTGGGGGACGCGGTGGCGTGGTGCTTCCTGATACTGGTCATCTC
CATACTGCACAGCTCTACCCTATTGAACGCGCTCTATGTCTTCTGCATCG
TGCTCGCCTATGGGGCCCTGCTCCTTCTCCTGGGCCGACCCCTCCTTTCC
CGGCATCTAGGACGGGCAGCCCGGGCAGGAAGCGAGACCTTACAACGGTC
ACTCCTAGCGTTGACGTTTATGGCTATTTTCCTCTCTGCATTCTTGACTG
ACCTGGCTGGCGTGCACACTATCTTCGGCTCCTTCTTGCTCGGCCTCGCC
TTTCCCATCAACCCCTCCACCCTTCGGCTTGCGAAAACGATCGAGGACTT
TGCCTCCATTGTCTTCCTCCCGCTGTATTTTGCCGCGTCTGGGCTCAGAA
CACAGCTAGCCAGTCTTTCTAGCCTTCGGGCGTTCCTGCTCTTTCTCCTC
GTGTTGACGATTGCCGTGGTGGGAAAATTTGTAGGATGCGCCGCTGCGGC
TCGCCTGGGAGGGAAGATGCCCTGGCGCGAGAGTTTCAGCGTGGGGGCTT
TGATGAATACACGAGGTCTCGTCGAGTTGATTGTACTAAATCTGGGGCTG
GACGCTGGAGTGATCGATGTAGAGCAATTCACCATCTTTGTGCTCATGGC
CCTTGTCACGACCTTCGCCACGTGTCCGGTGGTCAGCTGCCTGTATCCTG
TAGAAAAACGCGTGAAATTCGGGACAAGGAGCGCCGTGGAAGGAGGAAAG
CTTCTAGAAGGAAGACGTCTTTCGCGCGCCACGAGGAAATCTGGGTCTCA
ACGAACCCGCACAAGCGTGCCTGCTCTGGCAGAACCTGCGGCCAGACACA
TGGCCATTACGGGGAATGCCATGGAGAGGGGGAGGGCGGGGGAGAGGACG
GGGGAGAGGAAGGGGGAGAGGACGGGGGACGTCAGCACGACGGACGGGCA
AGAATCCGTGGAAGGGACCTTGCATTTGATGTCGGTGGCACAGCGCATGG
CGGACGTTACCGGCCTGGCCCTCCTCACGGCTTTGATCCGCCCCGAGCAC
ATTTCCTGCGTCCGTTTCGTGGAGTCCGAAGCGACGCCCTTGTCGATTTT
GACGTCACAAGGCACGCTCCAGATCGCCACAGGCATGGATCCCACCCTGC
AGATGATCCTCACGTGCGGATACTTGGCGGGGCTCCCTGTGGACGTCCAC
CTCAAGGTCTGCCAGCCTGAAGACTTCGCCAAGGAGCTCTGTCGTTGGGC
GGTGGAGCTGGACACTTCGATGGTCCTACTTCCCTGCCGGCGGGAAGATG
CCTCGCTCGGCGACTTCCACACCCGCTTCGTAAAGGGAGTGGTACATCGA
TGCCCCCGGCCGTTACTGCTCTTTTGGGACCATCAGCTGGGCGAAAGCCT
CTGCTCGCTCCCCAGGGGTTTGCGGCGAGGGAAAGTCGTCCTCCTCCTTT
TCCAGGGGGGACGGAACGACCGGGAAAGCCTCTGGCTGGTCCGCCGCCTC
CTGCGGGTCCAGGATGTGCATGGCCAGGAGAAAAGCAGCGCGTGCCGACG
GAACAGGAGGAGCAAGGAGGAAAGCAGGGCGGGCGGGTGGTGA

protein sequence of rna7142

>rna7142-protein ID=rna7142-protein|Name=rna7142|organism=Nannochloropsis gaditana|type=polypeptide|length=118bp
MVVDVYRIKKKKGAKGQEEDGNYMQRFSGDWETTFKQGSKWSVPDTKAGG
MALRQSKPDGGAVCPTCKGGGKNPCFNCKGKGVLVSGQRSLTCYICKGEG
MYFCADCQATGMISRKKV

mRNA from alignment at CM002470.1:545150..546222-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7142 ID=rna7142|Name=rna7142|organism=Nannochloropsis gaditana|type=mRNA|length=1073bp|location=Sequence derived from alignment at CM002470.1:545150..546222- (Nannochloropsis gaditana)
ATGGTGGTGGATGTCTATCGGATCAAGAAGAAGAAAGGGGCGAAAGGCCA
GGAGGAGGACGGGAACTACATGCAGCGCTTCTCCGGTACGCCCTCTCTCC
CTCCCTCCCTCCGTCCCTCCCTCCCTCCCTTCCTCCCTTAAATATGTATC
GACTCGCATCTTTTGGATAAAGCTTGGCCCGCGTACATGACCTTCCCGAG
TTCACGTACCCCTCCCTCCCTCCCGCCCTCCCTTCCTTCTCTCCTCCCCC
CCTCCCTCCCTCCCTCCCTCGCTTCCTCAGGCGACTGGGAGACCACCTTC
AAACAAGGCAGCAAGTGGTCCGTCCCCGACACCAAGGCCGGGTACGGGAG
GGAGGGAGGGAGGGAGTGAGGGAGTGGTGGCGCTTCTTCGAGCCCTGGTG
GATGAGTTGTGAGGGCAGGTGGGGCGCCCCAGTTAAGGAAGTCTCATCTC
GCGGTGACCCTACCAGGCATTCCATCGCCTCGCGCCCCGTCTTTCTGCTC
GGCCCCTGAATGTTGCCGGGCCTCGACCCTGCGCTTCCTCTCACCTCAAC
CTTCTCTCCGTACCTGTGCGGGGTATACATCCACGTGTCCCTCTCACCTC
GTCCTTCTCTCCGTACCTGTGCGGGGTATATATCCCCCCCCCCCCCCTTC
CCTCAGGGGAATGGCCTTGAGGCAGAGCAAACCGGACGGGGGCGCCGTCT
GTCCCACGTGTAAAGGCGGCGGAAAGAATCCTTGTTTCAATTGCAAGGTA
CGAGGCTCTCTGGGTCGGGTCAATGGGGAGAAGATCGGATAGGTGGGGGG
GCTCGCAGACTCGGCGTCCTCAGGGGCGTGGCCAGGAGAAGGACAGGCAC
CGAAGGTGCTCTCTTTTTACAGGGGACTCGTGCATTGTCAACCTTTCCCG
CGATCTCACGTGATTTGCGTCGCACTCATGCACGACATCTCTATTTTATT
TAGGGGAAGGGAGTCCTGGTTTCGGGGCAACGCTCACTTACCTGCTATAT
CTGCAAAGGAGAAGGAATGTACTTTTGTGCCGATTGTCAGGCGACGGGGA
TGATTAGTCGGAAGAAGGTGTAG

Coding sequence (CDS) from alignment at CM002470.1:545150..546222-

>rna7142 ID=rna7142|Name=rna7142|organism=Nannochloropsis gaditana|type=CDS|length=1428bp|location=Sequence derived from alignment at CM002470.1:545150..546222- (Nannochloropsis gaditana)
GGGAAGGGAGTCCTGGTTTCGGGGCAACGCTCACTTACCTGCTATATCTG
CAAAGGAGAAGGAATGTACTTTTGTGCCGATTGTCAGGCGACGGGGATGA
TTAGTCGGAAGAAGGTGTAGGGGAATGGCCTTGAGGCAGAGCAAACCGGA
CGGGGGCGCCGTCTGTCCCACGTGTAAAGGCGGCGGAAAGAATCCTTGTT
TCAATTGCAAGGCGACTGGGAGACCACCTTCAAACAAGGCAGCAAGTGGT
CCGTCCCCGACACCAAGGCCGGATGGTGGTGGATGTCTATCGGATCAAGA
AGAAGAAAGGGGCGAAAGGCCAGGAGGAGGACGGGAACTACATGCAGCGC
TTCTCCGGGGAAGGGAGTCCTGGTTTCGGGGCAACGCTCACTTACCTGCT
ATATCTGCAAAGGAGAAGGAATGTACTTTTGTGCCGATTGTCAGGCGACG
GGGATGATTAGTCGGAAGAAGGTGTAGGGGAATGGCCTTGAGGCAGAGCA
AACCGGACGGGGGCGCCGTCTGTCCCACGTGTAAAGGCGGCGGAAAGAAT
CCTTGTTTCAATTGCAAGGCGACTGGGAGACCACCTTCAAACAAGGCAGC
AAGTGGTCCGTCCCCGACACCAAGGCCGGATGGTGGTGGATGTCTATCGG
ATCAAGAAGAAGAAAGGGGCGAAAGGCCAGGAGGAGGACGGGAACTACAT
GCAGCGCTTCTCCGGGGAAGGGAGTCCTGGTTTCGGGGCAACGCTCACTT
ACCTGCTATATCTGCAAAGGAGAAGGAATGTACTTTTGTGCCGATTGTCA
GGCGACGGGGATGATTAGTCGGAAGAAGGTGTAGGGGAATGGCCTTGAGG
CAGAGCAAACCGGACGGGGGCGCCGTCTGTCCCACGTGTAAAGGCGGCGG
AAAGAATCCTTGTTTCAATTGCAAGGCGACTGGGAGACCACCTTCAAACA
AGGCAGCAAGTGGTCCGTCCCCGACACCAAGGCCGGATGGTGGTGGATGT
CTATCGGATCAAGAAGAAGAAAGGGGCGAAAGGCCAGGAGGAGGACGGGA
ACTACATGCAGCGCTTCTCCGGGGAAGGGAGTCCTGGTTTCGGGGCAACG
CTCACTTACCTGCTATATCTGCAAAGGAGAAGGAATGTACTTTTGTGCCG
ATTGTCAGGCGACGGGGATGATTAGTCGGAAGAAGGTGTAGGGGAATGGC
CTTGAGGCAGAGCAAACCGGACGGGGGCGCCGTCTGTCCCACGTGTAAAG
GCGGCGGAAAGAATCCTTGTTTCAATTGCAAGGCGACTGGGAGACCACCT
TCAAACAAGGCAGCAAGTGGTCCGTCCCCGACACCAAGGCCGGATGGTGG
TGGATGTCTATCGGATCAAGAAGAAGAAAGGGGCGAAAGGCCAGGAGGAG
GACGGGAACTACATGCAGCGCTTCTCCG

Synonyms

Publications