rna7134, rna7134 (mRNA) Nannochloropsis gaditana

Overview
Namerna7134
Unique Namerna7134
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1114
Alignment locationCM002470.1:525739..527307 +

Link to JBrowse

Properties
Property NameValue
Productflavodoxin family protein
Orig transcript idgnl|cribi|Naga_100631g3.6898.mrna
Orig protein idgnl|cribi|Naga_100631g3.6898
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:525739..527307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100631g3gene6898Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7134rna7134-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23554.1cds7117Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7134 ID=rna7134|Name=rna7134|organism=Nannochloropsis gaditana|type=mRNA|length=1114bp
TCGATCTGGGTTTCATGTCCAATCCGCCGCCTTTGTGATGTAACGCACCG
CCCTCCTTCCCTCCCTTCCTCCCTCCCTCTCTCCTTCCTTCTCCATGGGT
GGCAGGGACAACGGACGGTCTATCGCCTGACGCTGGTCAAGGCGTGGAAT
ATGGCCGAGGTGGACGGCTACGTGGAGCTGATTGGGATGGGCAAGCCGGA
CCTGATCGAGATCAAGGGGGTGACGTACTGTGGGAAGAGCGCCATCTCCA
CGCTGCGAATGGAGGAGAATGTGCCTTGGCACCACGAGGTGCGGGCCTTT
GCCCAAGCTATCGCCGATCGGACGGAAGGTGCGCCTGGGAGGAAGAGGGG
GCGGGAAGGAGGGAAGGAGAGAGGGAGAGATGGAGGGATGGAGAGAGGGA
GAGAGGGAGGAGCAGAGAGTGGACTTTCCCCGTGGTGCTTCTTGTGGCAC
AGACATGTGCTGGAGTGTTCCGGCCCACTTTCTTTCGTATTCCTCCTTAT
TTCGCCTCCTACCTCCCTCGCTTTCTCTCCTCCTTCCTCCCTCCCTCCCT
CCTTCCCTCCTTCCCTCCTTTCTTTGGATACAGGCGAATACGAATTCATG
GCGGAGCACGCTCATTCCTGCTGCACGCTTCTGGCGCGGAAAAAGACGTT
CTACCGGGGGGGGAAATGGTACACTTGGATCGACTATGCGAAATTCCACG
ATTTGATCGAGCGGTTCGAGAAGGATGGCACCGAATTCGACGCCTCGGAT
TATTGCGCGGAGACCCCCGCATGGGCCCTCAAGGGGGCGCCCGAAGAGGG
ATTTGACCCTGTGGACACGCGTTTCAGGAGGAATAAGGCGGGCGTGGTGG
AGGAAGTACCATACAGGCCAACAGATAGTGGGTGCGGGTAGGGACGGAGA
TGGGGGGGGAAGGCGAGGAGGGAGAAAGGAGAGAAGAGGGCCACAAAAGA
CAAGAAGCAAAATTGATGGGCTTAGTGAACGTTGATGAGGCATAGGACTA
AGGGGCTAAGCGGTCGTTACTGAAACAGATGGTTTTAGCAGGGAATGTTT
GGAAAGAAGAGTCACGAAAGATATGGGTGGCACAGCACCATCAATTACGT
CGTGAAAAGAATTG
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protein sequence of rna7134

>rna7134-protein ID=rna7134-protein|Name=rna7134|organism=Nannochloropsis gaditana|type=polypeptide|length=161bp
MAEVDGYVELIGMGKPDLIEIKGVTYCGKSAISTLRMEENVPWHHEVRAF
AQAIADRTEGEYEFMAEHAHSCCTLLARKKTFYRGGKWYTWIDYAKFHDL
IERFEKDGTEFDASDYCAETPAWALKGAPEEGFDPVDTRFRRNKAGVVEE
VPYRPTDSGCG
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mRNA from alignment at CM002470.1:525739..527307+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7134 ID=rna7134|Name=rna7134|organism=Nannochloropsis gaditana|type=mRNA|length=1569bp|location=Sequence derived from alignment at CM002470.1:525739..527307+ (Nannochloropsis gaditana)
TCGATCTGGGTTTCATGTCCAATCCGCCGCCTTTGTGATGTAAcgcaccg
ccctccttccctcccttcctccctccctctctccttccttctccatgggT
GGCAGGGACAACGGACGGTCTATCGCCTGACGCTGGTCAAGGCGTGGAAT
ATGGCCGAGGTGGACGGCTACGTGGAGCTGATTggtagggcgggagggag
ggagggagggagggagggagggagggcgggcgggagacgggaagaagggc
acaTGCTCACGCGGCTAGCGGGGCTCGCGGTCTCACACAGGGATGGGCAA
GCCGGACCTGATCGAGATCAAGGGGGTGACGTACTGTGGGAAGAGCGCCA
TCTCCACGCTGCGgtgaggacgggagggggagggagggagggggagggac
ggtttgggcaggagcgagggagcgaagggggtgggaaaaCCGGGGAAGGT
CTGAGAGAATCAATATAAGTGGATGTGTCGATTAAAGCTTGCGCCTTCAA
TGGACAGAATGGAGGAGAATGTGCCTTGGCACCACGAGGTGCGGGCCTTT
GCCCAAGCTATCGCCGATCGGACGGAAGGTgcgcctgggaggaagagggg
gcgggaaggagggaaggagagagggagagatggagggatggagagaggga
gagagggaggagcagagaGTGGACTTTCCCCGTGGTGCTTCTTGTGGCAC
AGACATGTGCTGGAGTGTTCCGGCCCACTTTCTTTCGTATTCCTCCTTAT
TTCgcctcctacctccctcgctttctctcctccttcctccctccctccct
ccttccctccttccctcctttctttggATACAGGCGAATACGAATTCATG
GCGGAGCACGCTCATTCCTGCTGCACGCTTCTGGCGCGGAAAAAGACGTT
CtaccggggggggaaatggtaCACTTGGATCGACTATGCGAAATTCCACG
ATTTGATCGagcgggtagggaggagggattgcAGGGGGGGacagatgggg
aggaaggggaagaaggttgCAAAAAGGAGGTTTTGGAGGCAATCTCGAGT
AGCAAAGGCACTTAATTAGACCTgtattcctccttctccatttcttattt
cctttccccttctccctttccctgctcgCTGCCTCTGGGTCACTGAATAT
CGATGGACCGTGCGTTCAGTTCGAGAAGGATGGCACCGAATTCGACGCCT
CGGATTATTGCGCGGAGACCCCCGCATGGGCCCTCAAGGGGGCGCCCGAA
GAGGGATTTGACCCTGTGGACACGCGTTTCAGGAGGAATAaggcgggcgt
ggtggaggaagtaCCATACAGGCCAACAGATAGTGGGTGCGGGTAGGGAC
GgagatggggggggaaggcgaggagggagaaaggagagaagagggccACA
AAAGACAAGAAGCAAAATTGATGGGCTTAGTGAACGTTGATGAGGCATAG
GACTAAGGGGCTAAGCGGTCGTTACTGAAACAGATGGTTTTAGCAGGGAA
TGTTTGGAAAGAAGAGTCACGAAAGATATGGGTGGCACAGCACCATCAAT
TACGTCGTGAAAAGAATTG
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Coding sequence (CDS) from alignment at CM002470.1:525739..527307+

>rna7134 ID=rna7134|Name=rna7134|organism=Nannochloropsis gaditana|type=CDS|length=2430bp|location=Sequence derived from alignment at CM002470.1:525739..527307+ (Nannochloropsis gaditana)
ATGGCCGAGGTGGACGGCTACGTGGAGCTGATTgGGATGGGCAAGCCGGA
CCTGATCGAGATCAAGGGGGTGACGTACTGTGGGAAGAGCGCCATCTCCA
CGCTGCGAATGGAGGAGAATGTGCCTTGGCACCACGAGGTGCGGGCCTTT
GCCCAAGCTATCGCCGATCGGACGGAAGGCGAATACGAATTCATGGCGGA
GCACGCTCATTCCTGCTGCACGCTTCTGGCGCGGAAAAAGACGTTCtacc
ggggggggaaatggtaCACTTGGATCGACTATGCGAAATTCCACGATTTG
ATCGagcggTTCGAGAAGGATGGCACCGAATTCGACGCCTCGGATTATTG
CGCGGAGACCCCCGCATGGGCCCTCAAGGGGGCGCCCGAAGAGGGATTTG
ACCCTGTGGACACGCGTTTCAGGAGGAATAaggcgggcgtggtggaggaa
gtaCCATACAGGCCAACAGATAGTGGGTGCGGGTAGATGGCCGAGGTGGA
CGGCTACGTGGAGCTGATTgGGATGGGCAAGCCGGACCTGATCGAGATCA
AGGGGGTGACGTACTGTGGGAAGAGCGCCATCTCCACGCTGCGAATGGAG
GAGAATGTGCCTTGGCACCACGAGGTGCGGGCCTTTGCCCAAGCTATCGC
CGATCGGACGGAAGGCGAATACGAATTCATGGCGGAGCACGCTCATTCCT
GCTGCACGCTTCTGGCGCGGAAAAAGACGTTCtaccggggggggaaatgg
taCACTTGGATCGACTATGCGAAATTCCACGATTTGATCGagcggTTCGA
GAAGGATGGCACCGAATTCGACGCCTCGGATTATTGCGCGGAGACCCCCG
CATGGGCCCTCAAGGGGGCGCCCGAAGAGGGATTTGACCCTGTGGACACG
CGTTTCAGGAGGAATAaggcgggcgtggtggaggaagtaCCATACAGGCC
AACAGATAGTGGGTGCGGGTAGATGGCCGAGGTGGACGGCTACGTGGAGC
TGATTgGGATGGGCAAGCCGGACCTGATCGAGATCAAGGGGGTGACGTAC
TGTGGGAAGAGCGCCATCTCCACGCTGCGAATGGAGGAGAATGTGCCTTG
GCACCACGAGGTGCGGGCCTTTGCCCAAGCTATCGCCGATCGGACGGAAG
GCGAATACGAATTCATGGCGGAGCACGCTCATTCCTGCTGCACGCTTCTG
GCGCGGAAAAAGACGTTCtaccggggggggaaatggtaCACTTGGATCGA
CTATGCGAAATTCCACGATTTGATCGagcggTTCGAGAAGGATGGCACCG
AATTCGACGCCTCGGATTATTGCGCGGAGACCCCCGCATGGGCCCTCAAG
GGGGCGCCCGAAGAGGGATTTGACCCTGTGGACACGCGTTTCAGGAGGAA
TAaggcgggcgtggtggaggaagtaCCATACAGGCCAACAGATAGTGGGT
GCGGGTAGATGGCCGAGGTGGACGGCTACGTGGAGCTGATTgGGATGGGC
AAGCCGGACCTGATCGAGATCAAGGGGGTGACGTACTGTGGGAAGAGCGC
CATCTCCACGCTGCGAATGGAGGAGAATGTGCCTTGGCACCACGAGGTGC
GGGCCTTTGCCCAAGCTATCGCCGATCGGACGGAAGGCGAATACGAATTC
ATGGCGGAGCACGCTCATTCCTGCTGCACGCTTCTGGCGCGGAAAAAGAC
GTTCtaccggggggggaaatggtaCACTTGGATCGACTATGCGAAATTCC
ACGATTTGATCGagcggTTCGAGAAGGATGGCACCGAATTCGACGCCTCG
GATTATTGCGCGGAGACCCCCGCATGGGCCCTCAAGGGGGCGCCCGAAGA
GGGATTTGACCCTGTGGACACGCGTTTCAGGAGGAATAaggcgggcgtgg
tggaggaagtaCCATACAGGCCAACAGATAGTGGGTGCGGGTAGATGGCC
GAGGTGGACGGCTACGTGGAGCTGATTgGGATGGGCAAGCCGGACCTGAT
CGAGATCAAGGGGGTGACGTACTGTGGGAAGAGCGCCATCTCCACGCTGC
GAATGGAGGAGAATGTGCCTTGGCACCACGAGGTGCGGGCCTTTGCCCAA
GCTATCGCCGATCGGACGGAAGGCGAATACGAATTCATGGCGGAGCACGC
TCATTCCTGCTGCACGCTTCTGGCGCGGAAAAAGACGTTCtaccgggggg
ggaaatggtaCACTTGGATCGACTATGCGAAATTCCACGATTTGATCGag
cggTTCGAGAAGGATGGCACCGAATTCGACGCCTCGGATTATTGCGCGGA
GACCCCCGCATGGGCCCTCAAGGGGGCGCCCGAAGAGGGATTTGACCCTG
TGGACACGCGTTTCAGGAGGAATAaggcgggcgtggtggaggaagtaCCA
TACAGGCCAACAGATAGTGGGTGCGGGTAG
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Synonyms
Publications