EWM23554.1, cds7117 (CDS) Nannochloropsis gaditana

Overview
NameEWM23554.1
Unique Namecds7117
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:525889..525922 +
Alignment locationCM002470.1:526029..526101 +
Alignment locationCM002470.1:526246..526316 +
Alignment locationCM002470.1:526572..526702 +
Alignment locationCM002470.1:526908..527084 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23554.1
Productflavodoxin family protein
Orig transcript idgnl|cribi|Naga_100631g3.6898.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:525889..525922 +
CM002470.1supercontigCM002470.1:526029..526101 +
CM002470.1supercontigCM002470.1:526246..526316 +
CM002470.1supercontigCM002470.1:526572..526702 +
CM002470.1supercontigCM002470.1:526908..527084 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR013917tRNA_wybutosine-synth
Homology
BLAST of EWM23554.1 vs. NCBI_GenBank
Match: gi|585104675|gb|EWM23554.1| (flavodoxin family protein [Nannochloropsis gaditana])

HSP 1 Score: 336.65 bits (862), Expect = 4.389e-117
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0
Query:    1 MAEVDGYVELIGMGKPDLIEIKGVTYCGKSAISTLRMEENVPWHHEVRAFAQAIADRTEGEYEFMAEHAHSCCTLLARKKTFYRGGKWYTWIDYAKFHDLIERFEKDGTEFDASDYCAETPAWALKGAPEEGFDPVDTRFRRNKAGVVEEVPYRPTDSGCG 161
            MAEVDGYVELIGMGKPDLIEIKGVTYCGKSAISTLRMEENVPWHHEVRAFAQAIADRTEGEYEFMAEHAHSCCTLLARKKTFYRGGKWYTWIDYAKFHDLIERFEKDGTEFDASDYCAETPAWALKGAPEEGFDPVDTRFRRNKAGVVEEVPYRPTDSGCG
Sbjct:    1 MAEVDGYVELIGMGKPDLIEIKGVTYCGKSAISTLRMEENVPWHHEVRAFAQAIADRTEGEYEFMAEHAHSCCTLLARKKTFYRGGKWYTWIDYAKFHDLIERFEKDGTEFDASDYCAETPAWALKGAPEEGFDPVDTRFRRNKAGVVEEVPYRPTDSGCG 161          
BLAST of EWM23554.1 vs. NCBI_GenBank
Match: gi|585104676|gb|EWM23555.1| (flavodoxin family protein [Nannochloropsis gaditana])

HSP 1 Score: 217.624 bits (553), Expect = 7.549e-69
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0
Query:   60 GEYEFMAEHAHSCCTLLARKKTFYRGGKWYTWIDYAKFHDLIERFEKDGTEFDASDYCAETPAWALKGAPEEGFDPVDTRFRRNKAGVVEEVPYRPTDSGCG 161
            GEYEFMAEHAHSCCTLLARKKTFYRGGKWYTWIDYAKFHDLIERFEKDGTEFDASDYCAETPAWALKGAPEEGFDPVDTRFRRNKAGVVEEVPYRPTDSGCG
Sbjct:  145 GEYEFMAEHAHSCCTLLARKKTFYRGGKWYTWIDYAKFHDLIERFEKDGTEFDASDYCAETPAWALKGAPEEGFDPVDTRFRRNKAGVVEEVPYRPTDSGCG 246          

HSP 2 Score: 124.405 bits (311), Expect = 3.115e-32
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0
Query:    1 MAEVDGYVELIGMGKPDLIEIKGVTYCGKSAISTLRMEENVPWHHEVRAFAQAIADRTEG 60
            MAEVDGYVELIGMGKPDLIEIKGVTYCGKSAISTLRMEENVPWHHEVRAFAQAIADRTEG
Sbjct:    1 MAEVDGYVELIGMGKPDLIEIKGVTYCGKSAISTLRMEENVPWHHEVRAFAQAIADRTEG 60          
BLAST of EWM23554.1 vs. NCBI_GenBank
Match: gi|970658684|gb|KUF96422.1| (sulfite oxidase [Phytophthora nicotianae])

HSP 1 Score: 196.823 bits (499), Expect = 1.378e-56
Identity = 94/161 (58.39%), Postives = 114/161 (70.81%), Query Frame = 0
Query:    1 MAEVDGYVELIGMGKPDLIEIKGVTYCGKSAISTLRMEENVPWHHEVRAFAQAIADRTEGEYEFMAEHAHSCCTLLARKKTFYRGGKWYTWIDYAKFHDLIERFEKDGTEFDASDYCAETPAWALKGAPEEGFDPVDTRFRRNKAGVVEEVPYRPTDSGCG 161
            M E+D Y ELI +G+PD IE+K VTYCGKS  S L M+ NVPWH EVR F  A+ DR  G+Y   +EHAHS C L+A+KK F R G W+TWIDY +FH+LI  + +DGT F A DY A TP WAL  + E+GFDPV+TRFRR K G V E  Y+ T+SGCG
Sbjct:  491 MEELDNYAELINIGQPDFIEVKAVTYCGKSDGSDLTMK-NVPWHEEVRGFCSALCDRVSGDYALASEHAHSNCVLIAKKK-FCRDGVWHTWIDYERFHELIATYYEDGTPFTADDYTAPTPYWALYDSKEQGFDPVETRFRRTKDGKVVEFAYQSTESGCG 649          
BLAST of EWM23554.1 vs. NCBI_GenBank
Match: gi|675197091|ref|XP_008907430.1| (hypothetical protein PPTG_13478 [Phytophthora parasitica INRA-310] >gi|566020899|gb|ETI43810.1| hypothetical protein F443_11402 [Phytophthora parasitica P1569] >gi|567958283|gb|ETK83875.1| hypothetical protein L915_11092 [Phytophthora parasitica] >gi|567986975|gb|ETL37290.1| hypothetical protein L916_10990 [Phytophthora parasitica] >gi|568016253|gb|ETL90430.1| hypothetical protein L917_10899 [Phytophthora parasitica] >gi|568046629|gb|ETM43734.1| hypothetical protein L914_10925 [Phytophthora parasitica] >gi|568092245|gb|ETN07054.1| hypothetical protein PPTG_13478 [Phytophthora parasitica INRA-310] >gi|570324538|gb|ETO72486.1| hypothetical protein F444_11472 [Phytophthora parasitica P1976] >gi|570948364|gb|ETP13621.1| hypothetical protein F441_11319 [Phytophthora parasitica CJ01A1] >gi|570981210|gb|ETP41684.1| hypothetical protein F442_11287 [Phytophthora parasitica P10297] >gi|970616723|gb|KUF64869.1| S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Phytophthora nicotianae])

HSP 1 Score: 196.823 bits (499), Expect = 2.385e-56
Identity = 94/161 (58.39%), Postives = 114/161 (70.81%), Query Frame = 0
Query:    1 MAEVDGYVELIGMGKPDLIEIKGVTYCGKSAISTLRMEENVPWHHEVRAFAQAIADRTEGEYEFMAEHAHSCCTLLARKKTFYRGGKWYTWIDYAKFHDLIERFEKDGTEFDASDYCAETPAWALKGAPEEGFDPVDTRFRRNKAGVVEEVPYRPTDSGCG 161
            M E+D Y ELI +G+PD IE+K VTYCGKS  S L M+ NVPWH EVR F  A+ DR  G+Y   +EHAHS C L+A+KK F R G W+TWIDY +FH+LI  + +DGT F A DY A TP WAL  + E+GFDPV+TRFRR K G V E  Y+ T+SGCG
Sbjct:  551 MEELDNYAELINIGQPDFIEVKAVTYCGKSDGSDLTMK-NVPWHEEVRGFCSALCDRVSGDYALASEHAHSNCVLIAKKK-FCRDGVWHTWIDYERFHELIATYYEDGTPFTADDYTAPTPYWALYDSKEQGFDPVETRFRRTKDGKVVEFAYQSTESGCG 709          
BLAST of EWM23554.1 vs. NCBI_GenBank
Match: gi|953502925|emb|CEG35693.1| (trna wybutosine-synthesizing protein 1 homolog [Plasmopara halstedii])

HSP 1 Score: 196.052 bits (497), Expect = 2.427e-56
Identity = 92/161 (57.14%), Postives = 115/161 (71.43%), Query Frame = 0
Query:    1 MAEVDGYVELIGMGKPDLIEIKGVTYCGKSAISTLRMEENVPWHHEVRAFAQAIADRTEGEYEFMAEHAHSCCTLLARKKTFYRGGKWYTWIDYAKFHDLIERFEKDGTEFDASDYCAETPAWALKGAPEEGFDPVDTRFRRNKAGVVEEVPYRPTDSGCG 161
            M E+D Y ELI +G PD IE+K VTYCGKS  S L M+ NVPWH EVR+F  A+ DR  G+Y   +EHAHS C L+A+KK FYR G W+TWIDY +FH+LI ++ +DGT F A +Y A TP WAL  + E+GFDP +TRFRR+K G V +  Y  T+SGCG
Sbjct:  497 MEELDNYAELINIGHPDFIEVKAVTYCGKSDGSNLTMQ-NVPWHEEVRSFCSALCDRVSGDYALASEHAHSNCVLIAKKK-FYREGVWHTWIDYDRFHELIAKYYEDGTLFTADEYIAPTPHWALYDSKEQGFDPAETRFRRSKDGKVVKFAYLSTESGCG 655          
BLAST of EWM23554.1 vs. NCBI_GenBank
Match: gi|301117924|ref|XP_002906690.1| (tRNA wybutosine-synthesizing protein, putative [Phytophthora infestans T30-4] >gi|262108039|gb|EEY66091.1| tRNA wybutosine-synthesizing protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 195.282 bits (495), Expect = 9.419e-56
Identity = 92/161 (57.14%), Postives = 115/161 (71.43%), Query Frame = 0
Query:    1 MAEVDGYVELIGMGKPDLIEIKGVTYCGKSAISTLRMEENVPWHHEVRAFAQAIADRTEGEYEFMAEHAHSCCTLLARKKTFYRGGKWYTWIDYAKFHDLIERFEKDGTEFDASDYCAETPAWALKGAPEEGFDPVDTRFRRNKAGVVEEVPYRPTDSGCG 161
            M E+D Y ELI +G+PD IE+K VTYCGKS  S L M+ NVPWH EVR F  A+ DR  G+Y   +EH+HS C L+A+KK F R G W+TWIDY +FH+LI ++ +DGT F A DY A TP WA+  + E+GFDPV+TRFRR K G V E  Y+ T+SGCG
Sbjct:  551 MEELDNYAELINIGQPDFIEVKAVTYCGKSDGSDLTMK-NVPWHEEVRGFCSALCDRVSGDYALASEHSHSNCVLIAKKK-FCREGVWHTWIDYERFHELIAKYYEDGTPFTADDYTAPTPYWAVYDSKEQGFDPVETRFRRTKDGKVVEFAYQSTESGCG 709          
BLAST of EWM23554.1 vs. NCBI_GenBank
Match: gi|1214712839|gb|OWZ23760.1| (TRNA wybutosine-synthesizing protein [Phytophthora megakarya])

HSP 1 Score: 194.512 bits (493), Expect = 2.343e-55
Identity = 91/161 (56.52%), Postives = 115/161 (71.43%), Query Frame = 0
Query:    1 MAEVDGYVELIGMGKPDLIEIKGVTYCGKSAISTLRMEENVPWHHEVRAFAQAIADRTEGEYEFMAEHAHSCCTLLARKKTFYRGGKWYTWIDYAKFHDLIERFEKDGTEFDASDYCAETPAWALKGAPEEGFDPVDTRFRRNKAGVVEEVPYRPTDSGCG 161
            M E+D Y ELI +G+PD IE+K VTYCGKS  S L M+ NVPWH EVR F  A+ +R  G+Y   +EHAHS C L+A+KK F R G W+TWIDY +FH+L+ ++ +DG+ F A DY A TP WAL  + E+GFDPV+TRFRR K G V E  Y+ T+SGCG
Sbjct:  553 MEELDNYAELINIGQPDFIEVKAVTYCGKSDGSDLTMK-NVPWHEEVRGFCSALCERVSGDYALASEHAHSNCVLIAKKK-FCRDGVWHTWIDYERFHELVAKYYEDGSTFTADDYTAPTPHWALYDSQEQGFDPVETRFRRTKDGKVVEFAYQSTESGCG 711          
BLAST of EWM23554.1 vs. NCBI_GenBank
Match: gi|698787402|ref|XP_009826733.1| (hypothetical protein H257_04059 [Aphanomyces astaci] >gi|574117822|gb|ETV83303.1| hypothetical protein H257_04059 [Aphanomyces astaci])

HSP 1 Score: 193.356 bits (490), Expect = 7.976e-55
Identity = 95/161 (59.01%), Postives = 112/161 (69.57%), Query Frame = 0
Query:    1 MAEVDGYVELIGMGKPDLIEIKGVTYCGKSAISTLRMEENVPWHHEVRAFAQAIADRTEGEYEFMAEHAHSCCTLLARKKTFYRGGKWYTWIDYAKFHDLIERFEKDGTEFDASDYCAETPAWALKGAPEEGFDPVDTRFRRNKAGVVEEVPYRPTDSGCG 161
            M E+D YVELI +G+PDLIEIK VTYCGKS  S L M+ NVP+H EVR F + +  +  G YE   EHAHS C L+A+ K F   G W+TWIDY KFH LI+ + KDGT F   DY A TPAWA+  APE GFDP++TRFRR K G V E+ Y  TDSGCG
Sbjct:  572 MKELDNYVELIHLGEPDLIEIKAVTYCGKSDASDLTMQ-NVPYHQEVRDFCELLCAKLGGGYELATEHAHSNCVLVAKTK-FKIDGHWHTWIDYDKFHTLIQAYYKDGTPFTTMDYIAPTPAWAVYNAPEAGFDPIETRFRRTKEGKVVEIEYTATDSGCG 730          
BLAST of EWM23554.1 vs. NCBI_GenBank
Match: gi|1173954857|gb|OQS01994.1| (tRNA wybutosine-synthesizing protein [Thraustotheca clavata])

HSP 1 Score: 192.2 bits (487), Expect = 1.247e-54
Identity = 91/161 (56.52%), Postives = 114/161 (70.81%), Query Frame = 0
Query:    1 MAEVDGYVELIGMGKPDLIEIKGVTYCGKSAISTLRMEENVPWHHEVRAFAQAIADRTEGEYEFMAEHAHSCCTLLARKKTFYRGGKWYTWIDYAKFHDLIERFEKDGTEFDASDYCAETPAWALKGAPEEGFDPVDTRFRRNKAGVVEEVPYRPTDSGCG 161
            M E+D YVELI +G+PDLIE+K VTYCGKS  S L ++ +VP+H EVR+F + +  + +GEY    EHAHS C L+A K  F   G+W+TWIDY KFH L++++ KDGT F   DY A TP WA+  APE GFDPV+TRFRR K G V E+ Y  TDSGCG
Sbjct:  535 MKEIDNYVELIQIGQPDLIEVKAVTYCGKSDASDLTIK-HVPYHEEVRSFCELLCSKLDGEYGLATEHAHSNCVLIA-KTQFKIEGQWHTWIDYDKFHQLVQQYYKDGTTFTTMDYIARTPHWAVYDAPEHGFDPVETRFRRTKEGKVVEIEYTATDSGCG 693          
BLAST of EWM23554.1 vs. NCBI_GenBank
Match: gi|1173935368|gb|OQR86498.1| (tRNA wybutosine-synthesizing protein [Achlya hypogyna])

HSP 1 Score: 192.2 bits (487), Expect = 1.339e-54
Identity = 95/161 (59.01%), Postives = 111/161 (68.94%), Query Frame = 0
Query:    1 MAEVDGYVELIGMGKPDLIEIKGVTYCGKSAISTLRMEENVPWHHEVRAFAQAIADRTEGEYEFMAEHAHSCCTLLARKKTFYRGGKWYTWIDYAKFHDLIERFEKDGTEFDASDYCAETPAWALKGAPEEGFDPVDTRFRRNKAGVVEEVPYRPTDSGCG 161
            M E+D YVELI +G+PDLIEIK VTYCGKS  S L M+ NVP+H EVRAF + +  +  G Y    EHAHS C LLA K  F   G W+TWIDY KFH L+++F KDGT F   DY A TP WA+  APE GFDP++TRFRR K G V E+ Y  TDSGCG
Sbjct:  540 MKEIDNYVELIEIGQPDLIEIKAVTYCGKSDASDLTMK-NVPYHEEVRAFCELLCAKLGGAYGLATEHAHSNCVLLA-KTQFKIDGHWHTWIDYDKFHALVQQFYKDGTPFSTMDYIAPTPHWAVYDAPEAGFDPIETRFRRTKEGKVVEIEYTATDSGCG 698          
The following BLAST results are available for this feature:
BLAST of EWM23554.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104675|gb|EWM23554.1|4.389e-117100.00flavodoxin family protein [Nannochloropsis gaditan... [more]
gi|585104676|gb|EWM23555.1|7.549e-69100.00flavodoxin family protein [Nannochloropsis gaditan... [more]
gi|970658684|gb|KUF96422.1|1.378e-5658.39sulfite oxidase [Phytophthora nicotianae][more]
gi|675197091|ref|XP_008907430.1|2.385e-5658.39hypothetical protein PPTG_13478 [Phytophthora para... [more]
gi|953502925|emb|CEG35693.1|2.427e-5657.14trna wybutosine-synthesizing protein 1 homolog [Pl... [more]
gi|301117924|ref|XP_002906690.1|9.419e-5657.14tRNA wybutosine-synthesizing protein, putative [Ph... [more]
gi|1214712839|gb|OWZ23760.1|2.343e-5556.52TRNA wybutosine-synthesizing protein [Phytophthora... [more]
gi|698787402|ref|XP_009826733.1|7.976e-5559.01hypothetical protein H257_04059 [Aphanomyces astac... [more]
gi|1173954857|gb|OQS01994.1|1.247e-5456.52tRNA wybutosine-synthesizing protein [Thraustothec... [more]
gi|1173935368|gb|OQR86498.1|1.339e-5459.01tRNA wybutosine-synthesizing protein [Achlya hypog... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7134rna7134Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications