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Properties
| Property Name | Value |
|---|
| Product | Optic atrophy 3 |
| Orig transcript id | gnl|cribi|Naga_100503g1.10423.mrna |
| Orig protein id | gnl|cribi|Naga_100503g1.10423 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002470.1 | supercontig | CM002470.1:517712..519010 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7130 ID=rna7130|Name=rna7130|organism=Nannochloropsis gaditana|type=mRNA|length=1694bp
ATGCTCCGGCTCCTAGACGTGGGCTTGGAGATAGGGCGCGGTCTGGGCCT
GGTGCGGTCCACGTCCTTCATTGAGGAAATGGAAGGACTGATTTTCCGCT
ACGCGTCCTCCCTCCTCGCCACGGCGCTCAAGCTCCTCCAGTACCTCTTC
TTGGGCCTGGCTCTCATCACCTCCGCCACTGCCCTCTACACTGTCGCCTA
TCAACTCATCATGCCGACGAAGCTGCACGAGAAGGAGCTCTTCTTTGACT
ACTTCCCGCCCGCAAACCCCCTGGACCCCTCCACCTGTCCCGGACTGTCC
CCCTCCCCTCCCTCCTTCCCTCCCTCCTCCCCTTCCCCCTACCCGCACGC
CCATATCGACTTCCTCTCCCAGCACAATCAATGGTTACCTTCCCCTTTGA
CGAAGACGGAGCCCCCCCTGGACCGCATCCTTCGACCGGAGCGTGTGTAT
GTGATCGACGTGGAGGTGACCGTCCCTGACTCCGAGACCAACGCCATGCT
CGGGAATTTCATGCTCTTCGTCGACCTTTTCACCAAGGACGATGATCTCT
TAGCCCACTCCGCCCGCCCGCTCATCCTCACCTACCGGTCTCCCTGGATC
CGCTTCTTTCGCTCCCTCCTCCTCGCCCCCGTCCTCGCCCTCGGATTCGC
CCAGGAGGCCCAAGTCCTCCGGGTCACTTTCTTCGACCGCTTCCGGGAGT
CTCTGGCCCACCCGCTTGCCCACGCCCGTGTTCGCCTTTCGTCCCCACGC
CTGCACCTGTATAAAGCCAGCATGAGCATTACGGCGCAATTGAATTGGCT
GCAATTCGTTATGTACAATTGGTTCTACACCACCGCGTTCTTAATCATCC
TTTTGATCAGTTCCATAGAGGCAGCCGTCGTGGGTTTTCTGTACGTATGG
TCCCAACTGGAGGGGGAGGAGGCGGAGGCGAGGGAGGAGGGGAAGGAGGA
GGAGGCTGGCTGGTACATCCATCCTGGGGACAGCCTGAGGGGAAGGGATG
GCTTGGGAGGGAGGGAAGGGGCAAGGCAGGCATTCGTGCCCGGCTACCAT
CATTATCACGTGGCGAATGACGAGGCGGAGGTGTTGTTGGGCGCGGGGGA
AGGGCAGGGGGGAAGGGAGGGAGGGAGGGAGGGGGGACGGGAGGGAGGGA
GGGAAAGCGCCGGAGTGCAGGTAGCGGGCATTTCGCGAGGAGAAGAGGGA
TTAGGAGGCAGCGAGGGAGGGGGAGGGGAAGGAGGCGAGCCTGTCTCTTC
GACCAATCGGAGCGTCTTCTTGGTGGACGACGAGGGGGGGCAAGTGGAAG
GGGTTAGGGCGGAGGGAGGAGGGGAAGGAGGGGTGGAGGGAGGGAGGGGG
GGAGTAGAGCCTCTGAATGGCTCAAGAGGTCCGACAGTCGTCCCTGTATC
GTCGAATCAGAGAGAGAGTGCGGGAGGAGGGGAGGAAGAAGGGGAAGTGC
AGTCGCAAAGCGTTCCAGGGCGCAGGCAGCACCATCACCATCCCGCGCAT
GAGGAGGGCGAGGACGACGACGATGACTTGTTGTTGGGAGCCCCTGAGAG
TTGATGGTACTGATAACAATTCAATGGACAACGTTCGTGCCTGATTTTGG
TTCCTTTAAAGCATTGACGTTTCGTGATTTTGTGGGGGGGATTGCTCTGG
ACCGTGGATGGGCCATATGGCGATAAAGCCTGTACAAAAAAGCC back to topprotein sequence of rna7130 >rna7130-protein ID=rna7130-protein|Name=rna7130|organism=Nannochloropsis gaditana|type=polypeptide|length=361bp
MAGLPLLKLGGLAIKTLAKPVAKRLKIEATKRPTLKNLYVTVGQWTHQAS
AWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTR
SNASAAQKEAAKEASRQKFREDLEARFLSLEARVIRMEERQQAGWSSVFP
GSKGKEGRRVALEDLPEAPHFADVETLKRKKNSRRRKRWLEEAVGWRRRR
EEVKEESVGEPKQAQTQRSSPRLSQRQHPGMISHRQKRDCPKREVLWIDR
PLPRPKVVQPLSPPLPALPGRRDQLPTGSWEGGREGGREQRRKGKKEGPL
HKNRGAGEVGGHGRGASSEEEEIEKEEKEEKEEEEEEEEGEESMEGKEVQ
RRLELKKAEKT back to topmRNA from alignment at CM002470.1:517712..519010+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7130 ID=rna7130|Name=rna7130|organism=Nannochloropsis gaditana|type=mRNA|length=1299bp|location=Sequence derived from alignment at CM002470.1:517712..519010+ (Nannochloropsis gaditana)
CGGCACACCCTCTACGGGACGCACCTCGCACGCGCAATCGTGTAACATCT
ACGCTTGACATGCAGGCACCGATGAAAGGGAATCATCATTCATACGCAAA
TTGCTCCTTTCACCCAATTACAAACAGCTCCTACGCATCCCAGCCATCTG
GCCCTGTGGAGGTCCGCAAATGCCTGAATTTACTTTCTAGATTGGTCGTT
CCCTCATGAAATTATGGCTGGTCTACCTCTTCTCAAGCTTGGGGGGTTAG
CAATCAAAACACTGGCCAAGCCAGTGGCCAAGCGCCTCAAAATCGAAGCC
ACAAAGCGACCGACGTTAAAAAACTTGTACGTGACGGTGGGGCAATGGAC
ACACCAAGCTTCTGCCTGGATCACCATTTCCTCGGCGGGACACAAATCTT
TGGGGgtgaaggagttggaggaagcagcagcCTTTGCAAGGGGTGCAGAT
TTCTTGTCGGAGACGTTGGTATTTTTTGTAGGGGGTGCAATCCTTACGTT
CGAGTACACTAGGTCAAACGCAAGCGCGGCACAGAAGGAAGCTGCCAAGG
AGGCGTCCCGACAGAAATTCAGGGAAGATTTGGAAGCCCGGTTCCTATCG
TTGGAAGCGAGGGTGATACGAATGGAGGAACGGCAGCAGGCAGGATGGTC
ATCTGTGTTCCCGGGctcgaaagggaaggagggacggcgagTGGCACTCG
AGGATTTGCCCGAAGCCCCGCATTTCGCCGACGTGGAGACGTTGAaacga
aaaaaaaacagcaggcggcggaagcggtggctggaggaggcggtgggctg
gaggagaaggagagaggaggtaaaggaggAGTCGGTGGGGGAGCCGAAAC
AGGCTCAGACGCAACGATCAagtccccgcctctcccaaCGCCAACATCCG
GGTATGATATCCCACAGACAAAAAAGAGATTGCCCAAAGAGAGAAGTCCT
TTGGATAgatcgtcctcttccccgcccaaAAGTGGTGCAGCCCttatctc
ctcccctcccggcgcTTCCAGGTCGGCGGGACCAACTGCCGACGGGctcg
tgggagggagggagggagggagggagggagcaaaggaggaaggggaagaa
ggagggtccATTGCACAAAAACAGAGGGGCCGGGGAAGTTGGCGGGCATG
GGCGTGGAGCTtcgtccgaggaggaggagatagagaaggaggaaaaggag
gagaaggaggaggaggaggaggaggaggaaggggaggaatcgatggaggg
gaaggaggtgcagCGACGCCTTGAGCTCAAAAAGGCAGAGAAAACGTGA back to topCoding sequence (CDS) from alignment at CM002470.1:517712..519010+ >rna7130 ID=rna7130|Name=rna7130|organism=Nannochloropsis gaditana|type=CDS|length=1086bp|location=Sequence derived from alignment at CM002470.1:517712..519010+ (Nannochloropsis gaditana)
ATGGCTGGTCTACCTCTTCTCAAGCTTGGGGGGTTAGCAATCAAAACACT
GGCCAAGCCAGTGGCCAAGCGCCTCAAAATCGAAGCCACAAAGCGACCGA
CGTTAAAAAACTTGTACGTGACGGTGGGGCAATGGACACACCAAGCTTCT
GCCTGGATCACCATTTCCTCGGCGGGACACAAATCTTTGGGGgtgaagga
gttggaggaagcagcagcCTTTGCAAGGGGTGCAGATTTCTTGTCGGAGA
CGTTGGTATTTTTTGTAGGGGGTGCAATCCTTACGTTCGAGTACACTAGG
TCAAACGCAAGCGCGGCACAGAAGGAAGCTGCCAAGGAGGCGTCCCGACA
GAAATTCAGGGAAGATTTGGAAGCCCGGTTCCTATCGTTGGAAGCGAGGG
TGATACGAATGGAGGAACGGCAGCAGGCAGGATGGTCATCTGTGTTCCCG
GGctcgaaagggaaggagggacggcgagTGGCACTCGAGGATTTGCCCGA
AGCCCCGCATTTCGCCGACGTGGAGACGTTGAaacgaaaaaaaaacagca
ggcggcggaagcggtggctggaggaggcggtgggctggaggagaaggaga
gaggaggtaaaggaggAGTCGGTGGGGGAGCCGAAACAGGCTCAGACGCA
ACGATCAagtccccgcctctcccaaCGCCAACATCCGGGTATGATATCCC
ACAGACAAAAAAGAGATTGCCCAAAGAGAGAAGTCCTTTGGATAgatcgt
cctcttccccgcccaaAAGTGGTGCAGCCCttatctcctcccctcccggc
gcTTCCAGGTCGGCGGGACCAACTGCCGACGGGctcgtgggagggaggga
gggagggagggagggagcaaaggaggaaggggaagaaggagggtccATTG
CACAAAAACAGAGGGGCCGGGGAAGTTGGCGGGCATGGGCGTGGAGCTtc
gtccgaggaggaggagatagagaaggaggaaaaggaggagaaggaggagg
aggaggaggaggaggaaggggaggaatcgatggaggggaaggaggtgcag
CGACGCCTTGAGCTCAAAAAGGCAGAGAAAACGTGA back to top
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