EWM23560.1, cds7113 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23560.1 vs. NCBI_GenBank
Match: gi|585104684|gb|EWM23560.1| (Optic atrophy 3 [Nannochloropsis gaditana]) HSP 1 Score: 711.064 bits (1834), Expect = 0.000e+0 Identity = 361/361 (100.00%), Postives = 361/361 (100.00%), Query Frame = 0
Query: 1 MAGLPLLKLGGLAIKTLAKPVAKRLKIEATKRPTLKNLYVTVGQWTHQASAWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNASAAQKEAAKEASRQKFREDLEARFLSLEARVIRMEERQQAGWSSVFPGSKGKEGRRVALEDLPEAPHFADVETLKRKKNSRRRKRWLEEAVGWRRRREEVKEESVGEPKQAQTQRSSPRLSQRQHPGMISHRQKRDCPKREVLWIDRPLPRPKVVQPLSPPLPALPGRRDQLPTGSWEGGREGGREQRRKGKKEGPLHKNRGAGEVGGHGRGASSEEEEIEKEEKEEKEEEEEEEEGEESMEGKEVQRRLELKKAEKT 361
MAGLPLLKLGGLAIKTLAKPVAKRLKIEATKRPTLKNLYVTVGQWTHQASAWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNASAAQKEAAKEASRQKFREDLEARFLSLEARVIRMEERQQAGWSSVFPGSKGKEGRRVALEDLPEAPHFADVETLKRKKNSRRRKRWLEEAVGWRRRREEVKEESVGEPKQAQTQRSSPRLSQRQHPGMISHRQKRDCPKREVLWIDRPLPRPKVVQPLSPPLPALPGRRDQLPTGSWEGGREGGREQRRKGKKEGPLHKNRGAGEVGGHGRGASSEEEEIEKEEKEEKEEEEEEEEGEESMEGKEVQRRLELKKAEKT
Sbjct: 1 MAGLPLLKLGGLAIKTLAKPVAKRLKIEATKRPTLKNLYVTVGQWTHQASAWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNASAAQKEAAKEASRQKFREDLEARFLSLEARVIRMEERQQAGWSSVFPGSKGKEGRRVALEDLPEAPHFADVETLKRKKNSRRRKRWLEEAVGWRRRREEVKEESVGEPKQAQTQRSSPRLSQRQHPGMISHRQKRDCPKREVLWIDRPLPRPKVVQPLSPPLPALPGRRDQLPTGSWEGGREGGREQRRKGKKEGPLHKNRGAGEVGGHGRGASSEEEEIEKEEKEEKEEEEEEEEGEESMEGKEVQRRLELKKAEKT 361
BLAST of EWM23560.1 vs. NCBI_GenBank
Match: gi|223997250|ref|XP_002288298.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220975406|gb|EED93734.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 106.301 bits (264), Expect = 2.684e-24 Identity = 62/142 (43.66%), Postives = 90/142 (63.38%), Query Frame = 0
Query: 6 LLKLGGLAIKTLAKPVAKRLKIEATKRPTLKNLYVTVGQWTHQASAWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNASAAQKEAAKEASRQKFRED---LEARFLSLEARVIRMEERQQAG 144
L KLG L IKTL+KPV+KRL+ + K PT ++ + VGQ TH + +TI S+G+K + LE+ A +RGAD LSET +F V G I+ +EY RS+ +KE A+ QK R+D L+A+ +SL+ R+ +EE +A
Sbjct: 1 LAKLGSLLIKTLSKPVSKRLRHQMIKYPTSRDALIWVGQSTHAITTRMTIWSSGYKVRSISRLEDEEALSRGADLLSETFIFAVSGGIVVYEYHRSSEKEKKKEEAR---LQKIRDDATRLQAKLISLDTRLSALEEYAKAN 139
BLAST of EWM23560.1 vs. NCBI_GenBank
Match: gi|857972716|emb|CEP01039.1| (hypothetical protein PBRA_008352 [Plasmodiophora brassicae]) HSP 1 Score: 95.1301 bits (235), Expect = 7.605e-20 Identity = 57/138 (41.30%), Postives = 81/138 (58.70%), Query Frame = 0
Query: 8 KLGGLAIKTLAKPVAKRLKIEATKRPTLKNLYVTVGQWTHQASAWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNASAAQKEAAKEASRQKFRED---LEARFLSLEARVIRMEERQQ 142
K+G LAI+TLAKPV+K ++ + P ++++V GQW H+ GH+ VK +EEA A GAD +SE ++F V G ++TFE RS+ SA EAAK ++ R D +EARF LE V RM + Q+
Sbjct: 10 KIGALAIRTLAKPVSKTFVSQSQQSPFWRSVFVRYGQWHHRQQYKFQARLLGHRVKNVKPIEEAKALELGADVISEYMIFAVAGIVITFEIYRSSRSA---EAAKADQERQARADKASVEARFAFLEREVARMHDEQE 144
BLAST of EWM23560.1 vs. NCBI_GenBank
Match: gi|901808188|gb|KMZ65108.1| (Optic atrophy 3 protein (OPA3) [Zostera marina]) HSP 1 Score: 94.7449 bits (234), Expect = 1.349e-19 Identity = 54/139 (38.85%), Postives = 80/139 (57.55%), Query Frame = 0
Query: 4 LPLLKLGGLAIKTLAKPVAKRLKIEATKRPTLKNLYVTVGQWTHQASAWITISSAGHKS-LGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNASAAQKEAAKEASRQKFRED---LEARFLSLEARVIRME 138
LPL KLG LA+KT++KP+A RLK EA + P +NL ++ Q H+ + I GH + + ++ L E A D + E VF VGGA++ FE RS S A+KEA ++ + R++ LE R L LE V +++
Sbjct: 3 LPLAKLGTLALKTISKPIANRLKTEAGRHPEFRNLIISFAQSNHRVTTKIQRRLYGHATNVEIRPLNEEKAVQAATDLIGEVFVFLVGGAVVIFEVQRSARSEARKEAMRKVELEGMRQNDLELEKRVLVLEQGVAQLQ 141
BLAST of EWM23560.1 vs. NCBI_GenBank
Match: gi|219125770|ref|XP_002183146.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405421|gb|EEC45364.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 91.6633 bits (226), Expect = 9.255e-19 Identity = 53/144 (36.81%), Postives = 85/144 (59.03%), Query Frame = 0
Query: 6 LLKLGGLAIKTLAKPVAKRLKIEATKRPTLKNLYVTVGQWTHQASAWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNASAAQKEAAKEASRQKFREDLEARFLSLEARVIRMEERQQAGWSSVF 149
L K+ GL +KTLAKP++KR+K E ++ P + L + +GQ +HQ S+ +TI SAG+K + LEE A GA+ + ET + V L +EY RS KE+ + A+ + R+ L+A+ +L+AR+ +E +A S+
Sbjct: 1 LTKIAGLLVKTLAKPLSKRIKHEFSRYPVTQRLLINIGQTSHQFSSRMTIWSAGYKVRSITPLEEEKAMKEGAELVGETFILSVSVGWLLWEYNRSKEKENDKESKRRAASKAERDSLQAKLHALDARLKALEVVVKANSESLL 144
BLAST of EWM23560.1 vs. NCBI_GenBank
Match: gi|1173946738|gb|OQR95243.1| (hypothetical protein ACHHYP_00157 [Achlya hypogyna]) HSP 1 Score: 91.6633 bits (226), Expect = 2.299e-18 Identity = 54/144 (37.50%), Postives = 88/144 (61.11%), Query Frame = 0
Query: 1 MAGLPLLKLGGLAIKTLAKPVAKRLKIEATKRPTLKNLYVTVGQWTHQASAWITISSAGH---KSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNASAAQKEAAKEASRQKF--REDLEARFLSLEARVIRMEE 139
M +PL K+GGL ++TL KPVAK+LK A +P L ++ +VGQ+ H I +S G K++ +K+L A +G++FL ETL+F V + +EY RS+ S+ +KE +A+ ++F ++ +E RF +LE + ME+
Sbjct: 1 MVAIPLFKVGGLLLRTLTKPVAKQLKQSAKTKPWLNSVCRSVGQYQHVVGVRIQMSMQGQIHWKTIQIKDLPADQAVDKGSEFLGETLIFSVAVIVAWYEYDRSSRSSKEKEL--KANEREFQRQQQIEMRFRTLEHLMASMED 142
BLAST of EWM23560.1 vs. NCBI_GenBank
Match: gi|1210516155|dbj|GAX24971.1| (hypothetical protein FisN_2Lh247 [Fistulifera solaris]) HSP 1 Score: 90.1225 bits (222), Expect = 4.734e-18 Identity = 53/141 (37.59%), Postives = 83/141 (58.87%), Query Frame = 0
Query: 3 GLPLLKLGGLAIKTLAKPVAKRLKIEATKRPTLKNLYVTVGQWTHQASAWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNASAAQKEAAKEASRQKFREDLEARFLSLEARVIRMEERQQA 143
LP+ KL L +KTLAKP++KR+K E ++ + + + +GQ +HQ S+ +TI SAG+K +K LE+ A GA+F+ E + V G + EY RS A +KE + + + R+ L+A +L+ RV + ERQ A
Sbjct: 4 ALPVTKLASLFVKTLAKPLSKRIKHEFSRYAATQRVLIGIGQASHQVSSRMTIWSAGYKVREIKPLEDENAMKTGAEFIGEFFILLVSGTTVVLEYNRSKAKDLEKEEKRIKAAKAERDALQAALHTLDLRVKEL-ERQLA 143
BLAST of EWM23560.1 vs. NCBI_GenBank
Match: gi|1109203134|ref|XP_019175781.1| (PREDICTED: OPA3-like protein [Ipomoea nil]) HSP 1 Score: 89.7373 bits (221), Expect = 8.284e-18 Identity = 55/126 (43.65%), Postives = 72/126 (57.14%), Query Frame = 0
Query: 4 LPLLKLGGLAIKTLAKPVAKRLKIEATKRPTLKNLYVTVGQWTHQASAWITISSAGHKS-LGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNASAAQKEAA--KEASRQKFREDLEAR 126
LPLLKLG LA+KTL+KP+A RLK EA + PT +NL V+ Q H+ + + GH + + ++ L E A D L E +F VG A L FE RS+ S A+KE KE + RED AR
Sbjct: 3 LPLLKLGTLALKTLSKPIAGRLKKEAGRHPTFRNLIVSFAQANHRITTTMQRRIYGHATDVEIRPLNEEKAVQNAVDLLGELFIFSVGVAALIFEVQRSSRSEAKKEELRRKEMEAVRLREDELAR 128
BLAST of EWM23560.1 vs. NCBI_GenBank
Match: gi|1210528939|dbj|GAX12416.1| (hypothetical protein FisN_2Hh247 [Fistulifera solaris]) HSP 1 Score: 89.3521 bits (220), Expect = 1.014e-17 Identity = 53/141 (37.59%), Postives = 82/141 (58.16%), Query Frame = 0
Query: 3 GLPLLKLGGLAIKTLAKPVAKRLKIEATKRPTLKNLYVTVGQWTHQASAWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNASAAQKEAAKEASRQKFREDLEARFLSLEARVIRMEERQQA 143
LP+ KL L +KTLAKP++KR+K E ++ + + + +GQ +HQ S+ +TI SAG+K +K LE+ A GA+F+ E + V G + EY RS A +KE + + + R+ L+A L+ RV + ERQ A
Sbjct: 4 ALPVTKLASLFVKTLAKPLSKRIKHEFSRYAATQRVLIGIGQASHQVSSRMTIWSAGYKVREIKPLEDENAMKTGAEFIGEFFILLVSGTTVVLEYNRSKAKDLEKEEKRIKASKAERDALQAALHKLDLRVKEL-ERQLA 143
BLAST of EWM23560.1 vs. NCBI_GenBank
Match: gi|294460849|gb|ADE75998.1| (unknown [Picea sitchensis]) HSP 1 Score: 88.9669 bits (219), Expect = 1.688e-17 Identity = 55/140 (39.29%), Postives = 80/140 (57.14%), Query Frame = 0
Query: 4 LPLLKLGGLAIKTLAKPVAKRLKIEATKRPTLKNLYVTVGQWTHQASAWITISSAGHKS-LGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNASAAQKEAAK----EASRQKFREDLEARFLSLEARVIRME 138
LPL KLG LA+KTL+KP+A RLK +A P ++L + + Q H+ S + GH + + ++ L+E A D L E +F VGGA + FE RS+ S A+KE A+ EA RQ+ +DL + L+ RV +E
Sbjct: 3 LPLFKLGTLALKTLSKPIASRLKTQAAHHPRFRSLIINLAQTNHKFSTQLQRRIYGHATNVAIRPLDEEKAVQAFTDLLGEVFIFSVGGAAVIFEVQRSSRSEARKEEARKQEFEALRQR-EDDLARELVLLKQRVDELE 141 The following BLAST results are available for this feature:
BLAST of EWM23560.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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