EWM23560.1, cds7113 (CDS) Nannochloropsis gaditana

Overview
NameEWM23560.1
Unique Namecds7113
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:517925..519010 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23560.1
ProductOptic atrophy 3
Orig transcript idgnl|cribi|Naga_100503g1.10423.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:517925..519010 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR010754OPA3-like
Homology
BLAST of EWM23560.1 vs. NCBI_GenBank
Match: gi|585104684|gb|EWM23560.1| (Optic atrophy 3 [Nannochloropsis gaditana])

HSP 1 Score: 711.064 bits (1834), Expect = 0.000e+0
Identity = 361/361 (100.00%), Postives = 361/361 (100.00%), Query Frame = 0
Query:    1 MAGLPLLKLGGLAIKTLAKPVAKRLKIEATKRPTLKNLYVTVGQWTHQASAWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNASAAQKEAAKEASRQKFREDLEARFLSLEARVIRMEERQQAGWSSVFPGSKGKEGRRVALEDLPEAPHFADVETLKRKKNSRRRKRWLEEAVGWRRRREEVKEESVGEPKQAQTQRSSPRLSQRQHPGMISHRQKRDCPKREVLWIDRPLPRPKVVQPLSPPLPALPGRRDQLPTGSWEGGREGGREQRRKGKKEGPLHKNRGAGEVGGHGRGASSEEEEIEKEEKEEKEEEEEEEEGEESMEGKEVQRRLELKKAEKT 361
            MAGLPLLKLGGLAIKTLAKPVAKRLKIEATKRPTLKNLYVTVGQWTHQASAWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNASAAQKEAAKEASRQKFREDLEARFLSLEARVIRMEERQQAGWSSVFPGSKGKEGRRVALEDLPEAPHFADVETLKRKKNSRRRKRWLEEAVGWRRRREEVKEESVGEPKQAQTQRSSPRLSQRQHPGMISHRQKRDCPKREVLWIDRPLPRPKVVQPLSPPLPALPGRRDQLPTGSWEGGREGGREQRRKGKKEGPLHKNRGAGEVGGHGRGASSEEEEIEKEEKEEKEEEEEEEEGEESMEGKEVQRRLELKKAEKT
Sbjct:    1 MAGLPLLKLGGLAIKTLAKPVAKRLKIEATKRPTLKNLYVTVGQWTHQASAWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNASAAQKEAAKEASRQKFREDLEARFLSLEARVIRMEERQQAGWSSVFPGSKGKEGRRVALEDLPEAPHFADVETLKRKKNSRRRKRWLEEAVGWRRRREEVKEESVGEPKQAQTQRSSPRLSQRQHPGMISHRQKRDCPKREVLWIDRPLPRPKVVQPLSPPLPALPGRRDQLPTGSWEGGREGGREQRRKGKKEGPLHKNRGAGEVGGHGRGASSEEEEIEKEEKEEKEEEEEEEEGEESMEGKEVQRRLELKKAEKT 361          
BLAST of EWM23560.1 vs. NCBI_GenBank
Match: gi|223997250|ref|XP_002288298.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220975406|gb|EED93734.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 106.301 bits (264), Expect = 2.684e-24
Identity = 62/142 (43.66%), Postives = 90/142 (63.38%), Query Frame = 0
Query:    6 LLKLGGLAIKTLAKPVAKRLKIEATKRPTLKNLYVTVGQWTHQASAWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNASAAQKEAAKEASRQKFRED---LEARFLSLEARVIRMEERQQAG 144
            L KLG L IKTL+KPV+KRL+ +  K PT ++  + VGQ TH  +  +TI S+G+K   +  LE+  A +RGAD LSET +F V G I+ +EY RS+    +KE A+    QK R+D   L+A+ +SL+ R+  +EE  +A 
Sbjct:    1 LAKLGSLLIKTLSKPVSKRLRHQMIKYPTSRDALIWVGQSTHAITTRMTIWSSGYKVRSISRLEDEEALSRGADLLSETFIFAVSGGIVVYEYHRSSEKEKKKEEAR---LQKIRDDATRLQAKLISLDTRLSALEEYAKAN 139          
BLAST of EWM23560.1 vs. NCBI_GenBank
Match: gi|857972716|emb|CEP01039.1| (hypothetical protein PBRA_008352 [Plasmodiophora brassicae])

HSP 1 Score: 95.1301 bits (235), Expect = 7.605e-20
Identity = 57/138 (41.30%), Postives = 81/138 (58.70%), Query Frame = 0
Query:    8 KLGGLAIKTLAKPVAKRLKIEATKRPTLKNLYVTVGQWTHQASAWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNASAAQKEAAKEASRQKFRED---LEARFLSLEARVIRMEERQQ 142
            K+G LAI+TLAKPV+K    ++ + P  ++++V  GQW H+          GH+   VK +EEA A   GAD +SE ++F V G ++TFE  RS+ SA   EAAK    ++ R D   +EARF  LE  V RM + Q+
Sbjct:   10 KIGALAIRTLAKPVSKTFVSQSQQSPFWRSVFVRYGQWHHRQQYKFQARLLGHRVKNVKPIEEAKALELGADVISEYMIFAVAGIVITFEIYRSSRSA---EAAKADQERQARADKASVEARFAFLEREVARMHDEQE 144          
BLAST of EWM23560.1 vs. NCBI_GenBank
Match: gi|901808188|gb|KMZ65108.1| (Optic atrophy 3 protein (OPA3) [Zostera marina])

HSP 1 Score: 94.7449 bits (234), Expect = 1.349e-19
Identity = 54/139 (38.85%), Postives = 80/139 (57.55%), Query Frame = 0
Query:    4 LPLLKLGGLAIKTLAKPVAKRLKIEATKRPTLKNLYVTVGQWTHQASAWITISSAGHKS-LGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNASAAQKEAAKEASRQKFRED---LEARFLSLEARVIRME 138
            LPL KLG LA+KT++KP+A RLK EA + P  +NL ++  Q  H+ +  I     GH + + ++ L E  A     D + E  VF VGGA++ FE  RS  S A+KEA ++   +  R++   LE R L LE  V +++
Sbjct:    3 LPLAKLGTLALKTISKPIANRLKTEAGRHPEFRNLIISFAQSNHRVTTKIQRRLYGHATNVEIRPLNEEKAVQAATDLIGEVFVFLVGGAVVIFEVQRSARSEARKEAMRKVELEGMRQNDLELEKRVLVLEQGVAQLQ 141          
BLAST of EWM23560.1 vs. NCBI_GenBank
Match: gi|219125770|ref|XP_002183146.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405421|gb|EEC45364.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 91.6633 bits (226), Expect = 9.255e-19
Identity = 53/144 (36.81%), Postives = 85/144 (59.03%), Query Frame = 0
Query:    6 LLKLGGLAIKTLAKPVAKRLKIEATKRPTLKNLYVTVGQWTHQASAWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNASAAQKEAAKEASRQKFREDLEARFLSLEARVIRMEERQQAGWSSVF 149
            L K+ GL +KTLAKP++KR+K E ++ P  + L + +GQ +HQ S+ +TI SAG+K   +  LEE  A   GA+ + ET +  V    L +EY RS      KE+ + A+ +  R+ L+A+  +L+AR+  +E   +A   S+ 
Sbjct:    1 LTKIAGLLVKTLAKPLSKRIKHEFSRYPVTQRLLINIGQTSHQFSSRMTIWSAGYKVRSITPLEEEKAMKEGAELVGETFILSVSVGWLLWEYNRSKEKENDKESKRRAASKAERDSLQAKLHALDARLKALEVVVKANSESLL 144          
BLAST of EWM23560.1 vs. NCBI_GenBank
Match: gi|1173946738|gb|OQR95243.1| (hypothetical protein ACHHYP_00157 [Achlya hypogyna])

HSP 1 Score: 91.6633 bits (226), Expect = 2.299e-18
Identity = 54/144 (37.50%), Postives = 88/144 (61.11%), Query Frame = 0
Query:    1 MAGLPLLKLGGLAIKTLAKPVAKRLKIEATKRPTLKNLYVTVGQWTHQASAWITISSAGH---KSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNASAAQKEAAKEASRQKF--REDLEARFLSLEARVIRMEE 139
            M  +PL K+GGL ++TL KPVAK+LK  A  +P L ++  +VGQ+ H     I +S  G    K++ +K+L    A  +G++FL ETL+F V   +  +EY RS+ S+ +KE   +A+ ++F  ++ +E RF +LE  +  ME+
Sbjct:    1 MVAIPLFKVGGLLLRTLTKPVAKQLKQSAKTKPWLNSVCRSVGQYQHVVGVRIQMSMQGQIHWKTIQIKDLPADQAVDKGSEFLGETLIFSVAVIVAWYEYDRSSRSSKEKEL--KANEREFQRQQQIEMRFRTLEHLMASMED 142          
BLAST of EWM23560.1 vs. NCBI_GenBank
Match: gi|1210516155|dbj|GAX24971.1| (hypothetical protein FisN_2Lh247 [Fistulifera solaris])

HSP 1 Score: 90.1225 bits (222), Expect = 4.734e-18
Identity = 53/141 (37.59%), Postives = 83/141 (58.87%), Query Frame = 0
Query:    3 GLPLLKLGGLAIKTLAKPVAKRLKIEATKRPTLKNLYVTVGQWTHQASAWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNASAAQKEAAKEASRQKFREDLEARFLSLEARVIRMEERQQA 143
             LP+ KL  L +KTLAKP++KR+K E ++    + + + +GQ +HQ S+ +TI SAG+K   +K LE+  A   GA+F+ E  +  V G  +  EY RS A   +KE  +  + +  R+ L+A   +L+ RV  + ERQ A
Sbjct:    4 ALPVTKLASLFVKTLAKPLSKRIKHEFSRYAATQRVLIGIGQASHQVSSRMTIWSAGYKVREIKPLEDENAMKTGAEFIGEFFILLVSGTTVVLEYNRSKAKDLEKEEKRIKAAKAERDALQAALHTLDLRVKEL-ERQLA 143          
BLAST of EWM23560.1 vs. NCBI_GenBank
Match: gi|1109203134|ref|XP_019175781.1| (PREDICTED: OPA3-like protein [Ipomoea nil])

HSP 1 Score: 89.7373 bits (221), Expect = 8.284e-18
Identity = 55/126 (43.65%), Postives = 72/126 (57.14%), Query Frame = 0
Query:    4 LPLLKLGGLAIKTLAKPVAKRLKIEATKRPTLKNLYVTVGQWTHQASAWITISSAGHKS-LGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNASAAQKEAA--KEASRQKFREDLEAR 126
            LPLLKLG LA+KTL+KP+A RLK EA + PT +NL V+  Q  H+ +  +     GH + + ++ L E  A     D L E  +F VG A L FE  RS+ S A+KE    KE    + RED  AR
Sbjct:    3 LPLLKLGTLALKTLSKPIAGRLKKEAGRHPTFRNLIVSFAQANHRITTTMQRRIYGHATDVEIRPLNEEKAVQNAVDLLGELFIFSVGVAALIFEVQRSSRSEAKKEELRRKEMEAVRLREDELAR 128          
BLAST of EWM23560.1 vs. NCBI_GenBank
Match: gi|1210528939|dbj|GAX12416.1| (hypothetical protein FisN_2Hh247 [Fistulifera solaris])

HSP 1 Score: 89.3521 bits (220), Expect = 1.014e-17
Identity = 53/141 (37.59%), Postives = 82/141 (58.16%), Query Frame = 0
Query:    3 GLPLLKLGGLAIKTLAKPVAKRLKIEATKRPTLKNLYVTVGQWTHQASAWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNASAAQKEAAKEASRQKFREDLEARFLSLEARVIRMEERQQA 143
             LP+ KL  L +KTLAKP++KR+K E ++    + + + +GQ +HQ S+ +TI SAG+K   +K LE+  A   GA+F+ E  +  V G  +  EY RS A   +KE  +  + +  R+ L+A    L+ RV  + ERQ A
Sbjct:    4 ALPVTKLASLFVKTLAKPLSKRIKHEFSRYAATQRVLIGIGQASHQVSSRMTIWSAGYKVREIKPLEDENAMKTGAEFIGEFFILLVSGTTVVLEYNRSKAKDLEKEEKRIKASKAERDALQAALHKLDLRVKEL-ERQLA 143          
BLAST of EWM23560.1 vs. NCBI_GenBank
Match: gi|294460849|gb|ADE75998.1| (unknown [Picea sitchensis])

HSP 1 Score: 88.9669 bits (219), Expect = 1.688e-17
Identity = 55/140 (39.29%), Postives = 80/140 (57.14%), Query Frame = 0
Query:    4 LPLLKLGGLAIKTLAKPVAKRLKIEATKRPTLKNLYVTVGQWTHQASAWITISSAGHKS-LGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNASAAQKEAAK----EASRQKFREDLEARFLSLEARVIRME 138
            LPL KLG LA+KTL+KP+A RLK +A   P  ++L + + Q  H+ S  +     GH + + ++ L+E  A     D L E  +F VGGA + FE  RS+ S A+KE A+    EA RQ+  +DL    + L+ RV  +E
Sbjct:    3 LPLFKLGTLALKTLSKPIASRLKTQAAHHPRFRSLIINLAQTNHKFSTQLQRRIYGHATNVAIRPLDEEKAVQAFTDLLGEVFIFSVGGAAVIFEVQRSSRSEARKEEARKQEFEALRQR-EDDLARELVLLKQRVDELE 141          
The following BLAST results are available for this feature:
BLAST of EWM23560.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104684|gb|EWM23560.1|0.000e+0100.00Optic atrophy 3 [Nannochloropsis gaditana][more]
gi|223997250|ref|XP_002288298.1|2.684e-2443.66predicted protein, partial [Thalassiosira pseudona... [more]
gi|857972716|emb|CEP01039.1|7.605e-2041.30hypothetical protein PBRA_008352 [Plasmodiophora b... [more]
gi|901808188|gb|KMZ65108.1|1.349e-1938.85Optic atrophy 3 protein (OPA3) [Zostera marina][more]
gi|219125770|ref|XP_002183146.1|9.255e-1936.81predicted protein, partial [Phaeodactylum tricornu... [more]
gi|1173946738|gb|OQR95243.1|2.299e-1837.50hypothetical protein ACHHYP_00157 [Achlya hypogyna... [more]
gi|1210516155|dbj|GAX24971.1|4.734e-1837.59hypothetical protein FisN_2Lh247 [Fistulifera sola... [more]
gi|1109203134|ref|XP_019175781.1|8.284e-1843.65PREDICTED: OPA3-like protein [Ipomoea nil][more]
gi|1210528939|dbj|GAX12416.1|1.014e-1737.59hypothetical protein FisN_2Hh247 [Fistulifera sola... [more]
gi|294460849|gb|ADE75998.1|1.688e-1739.29unknown [Picea sitchensis][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7130rna7130Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications