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Properties
| Property Name | Value |
|---|
| Product | bernardinelli-seip congenital lipodystrophy 2 protein variant 2 |
| Orig transcript id | gnl|cribi|Naga_100503g2.10425.mrna |
| Orig protein id | gnl|cribi|Naga_100503g2.10425 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002470.1 | supercontig | CM002470.1:514599..517134 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7129 ID=rna7129|Name=rna7129|organism=Nannochloropsis gaditana|type=mRNA|length=695bp
TAATACTAATCCCGTCGCTTTTTTTGTGTGTTACCGGGCTACACCAGGCA
CGCCCTAAGTGTAATGTCCCGGCATGTTTTGATGTGATATTTTTCGACGC
CCAGACCGCGGTCTTCTCCTGCGTGGTGAAGCAAAAAGGAAAAACATCAC
AAACAGGGAGGAGGACGCTCCCATGGCGGAGGCCGTATCACCCCTCCATG
GGAAACTACGACAACACTGTTGGGAGAAATTTACTACACGAACGGACCGC
GGGCAGGAAGATATCGTTATAGGACGTAGATCGAGAGCAGCCTGCGTCTG
GGAACCTGGTTTTGTTGTGAAGACGCCTTACGGATGGGGTACCCTCAGGC
GGTACCGTGGTGGGAGCAAGGAGGGTACTTTGGAGGTCCGATTGGAATGG
AAGGCGATGTGCTACATTCGACCTCAAGACATTCAAGACAGGTACAAAAG
TATTCTAGTCGCACAGCTCTTTTAGGAGAAGATGATTTATTTGGGTTCCA
TTTTCCCCCTCCTTGGCTTCCCAATCTCCCGACGCACCCTATCTCCTCCT
CCTTCCTTCTTGCCCTCCTCGCCTCTTTTCTCCAGATCTGTCGCCCCCTT
GGGCGCCTGCCTCCTCACCACGGTGGGTGCCGGTGTCCTCGTTAACTTCC
GGCCTGCTACCAAAGTGCACGTTGTCCGGATCTGGAATCGCCTGG back to topprotein sequence of rna7129 >rna7129-protein ID=rna7129-protein|Name=rna7129|organism=Nannochloropsis gaditana|type=polypeptide|length=517bp
MLRLLDVGLEIGRGLGLVRSTSFIEEMEGLIFRYASSLLATALKLLQYLF
LGLALITSATALYTVAYQLIMPTKLHEKELFFDYFPPANPLDPSTCPGLS
PSPPSFPPSSPSPYPHAHIDFLSQHNQWLPSPLTKTEPPLDRILRPERVY
VIDVEVTVPDSETNAMLGNFMLFVDLFTKDDDLLAHSARPLILTYRSPWI
RFFRSLLLAPVLALGFAQEAQVLRVTFFDRFRESLAHPLAHARVRLSSPR
LHLYKASMSITAQLNWLQFVMYNWFYTTAFLIILLISSIEAAVVGFLYVW
SQLEGEEAEAREEGKEEEAGWYIHPGDSLRGRDGLGGREGARQAFVPGYH
HYHVANDEAEVLLGAGEGQGGREGGREGGREGGRESAGVQVAGISRGEEG
LGGSEGGGGEGGEPVSSTNRSVFLVDDEGGQVEGVRAEGGGEGGVEGGRG
GVEPLNGSRGPTVVPVSSNQRESAGGGEEEGEVQSQSVPGRRQHHHHPAH
EEGEDDDDDLLLGAPES back to topmRNA from alignment at CM002470.1:514599..517134+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7129 ID=rna7129|Name=rna7129|organism=Nannochloropsis gaditana|type=mRNA|length=2536bp|location=Sequence derived from alignment at CM002470.1:514599..517134+ (Nannochloropsis gaditana)
ATGCTCCGGCTCCTAGACGTGGGCTTGGAGATAGGGCGCGGTCTGGGCCT
GGTGCGGTCCACGTCCTTCATTGAGGTACCTGGTTCATGGATCccgagag
ggtggagggcgagggtaGGGGGGTATAAGTATTCTTGCATGAATAGACAG
GATTTCCTCACGGCAGTGAGGAACTGAGAAATTTGGTGGCTTCAGGATGC
GTTTGCTTTTCCTTGAGGAAGTAGAGAAGGCGGGACAGGGGCTGCCCTGT
GATGGGGAACAGTTGAGTTCTTCGAGGGGACTGTTTACGAGGACGATAGA
ATGGACATTATTGCATATATGATATGTGTGTACATTTACCTCGAATCCTC
TGCATATCTCGTTTGTCTTTAAAATGCGGACCGTATGAAGCCAGGAGACG
TATCGACTGCTGCTCCCCCCATTCCTCTcactcccccttccacccctccc
tccctccctccctccctccctcctcctttcccaggaaatggaaggactGA
TTTTCCGCtacgcgtcctccctcctcgccacgGCGCTCAAGCTCCTCCAG
TACCTCTTCTTGGGCCTGGCTCTCATCACCTCCGCCACTGCCCTCTACAC
TGTCGCCTATCAACTCATCATGCCGACGAAGCTGCACGAGAAGGAGCTCT
TCTTTGACTACTTCCCGCCCGCAAACCCCCTGGGTGAGCGGCTGGCGGCG
AGGCAGGAGCCGTCCGGTGGGGCGCCCGGCTCTCTGTGGAAGGGCGGGCT
GGAGGACATTGGTGAGGATCAaggctgggagggatggcAGGACAAGGGCG
AGAATGGCTAGCCTTGAAtcgcaggggggggaggaggggagaaaatggTA
GGACAGCGGCCATGGACGTGCCTGTCCTGGGATGTGTGCGTCTTTGTCTG
GACAGATGACCTCGCCACGTACCCCTGCGCCCCTTATCCCTGTCTCCCAG
GACCTTGCCGGCTTCCCCTTGCCTAGCCtcaccctccgccctcaCCTCTC
TCCGctacctctctccctttccctccctccttgttctccAGGCAAGATAT
TCCTCTCCGGCCGgaagcccccctccttccctccctccccccctccttcc
ccccctccttccctagACCCCTCCACCTGTCCCGGactgtccccctcccc
tccctccttccctccctcctccccttccccctaccCGCACGCCCATAtcg
acttcctctcccagcacaATCAATGGTTACCTTCCCCTTTGACGAAGACG
GAGCCCCCCCTGGACCGCATCCTTCGACCGGAGCGTGTGTATGTGATCGA
CGTGGAGGTGACCGTCCCTGACTCCGAGACCAACGCCATGCTCGGGAATT
TCATGCTCTTCGTCGACCTTTTCACCAAGGACGATGATCTCTTAGCCCAC
TCCGCCCGCCCGCTCATCCTCACCTACCGGTCTCCCTGGATCCGCttctt
tcgctccctcctcctcgcccccgtcctcgccctcggaTTCGCCCAGGAGG
CCCAAGTCCTCCGGGTCACTTTCTTCGACCGCTTCCGGGAGTCTCTGGCC
CACCCGCTTGCCCACGCCCGTGTTCGCCTTTCGTCCCCACGCCTGCACCT
GTATAAAGCCAGCATGAGCATTACGGCGCAATTGAATTGGCTGCAATTCG
TTATGTACAATTGGTTCTACACCACCGCGTTCTTAATCATCCTTTTGATC
AGTTCCATAGAGGCAGCCGTCGTGGGTTTTCTGTACGTATGGTCCCaact
ggagggggaggaggcggaggcgagggaggaggggaaggaggaggaggctg
gctgGTACATCCATCCTGGGGACAGcctgaggggaagggatggcttggga
gggagggaaggggcaagGCAGGCATTCGTGCCCGGCTACCATCATTATCA
CGTGGCGAAtgacgaggcggaggtgtTGTTGGgcgcgggggaagggcagg
ggggaagggagggagggagggaggggggacgggagggagggagggaaagc
gccgGAGTGCAGGTAGCGGGCATTtcgcgaggagaagagggattaggagg
cagcgagggagggggaggggaaggaggcgagccTGTCTCTTCGACCAATC
GGAGCGTCTTCTtggtggacgacgagggggggcaaGTGGAAGGGGTtagg
gcggagggaggaggggaaggaggggtggagggagggagggggggagtaGA
GCCTCTGAATGGCTCAAGAGGTCCGACAGTCGTCCCTGTATCGTCGAATC
AGAGAGAgagtgcgggaggaggggaggaagaaggggaagtgcAGTCGCAA
AGCGTTCCAGGGCGCAGGCAGCACCATCACCATCCCGCGcatgaggaggg
cgaggacgacgacgatgacttGTTGTTGGGAGCCCCTGAGAGTTGATGGT
ACTGATAACAATTCAATGGACAACGTTCGTGCCTGATTTTGGTTCCTTTA
AAGCATTGACGTTTCGTGATTTTGTGGGGGGGATTGCTCTGGACCGTGGA
TGGGCCATATGGCGATAAAGCCTGTACAAAAAAGCC back to topCoding sequence (CDS) from alignment at CM002470.1:514599..517134+ >rna7129 ID=rna7129|Name=rna7129|organism=Nannochloropsis gaditana|type=CDS|length=4662bp|location=Sequence derived from alignment at CM002470.1:514599..517134+ (Nannochloropsis gaditana)
ATGCTCCGGCTCCTAGACGTGGGCTTGGAGATAGGGCGCGGTCTGGGCCT
GGTGCGGTCCACGTCCTTCATTGAGgaaatggaaggactGATTTTCCGCt
acgcgtcctccctcctcgccacgGCGCTCAAGCTCCTCCAGTACCTCTTC
TTGGGCCTGGCTCTCATCACCTCCGCCACTGCCCTCTACACTGTCGCCTA
TCAACTCATCATGCCGACGAAGCTGCACGAGAAGGAGCTCTTCTTTGACT
ACTTCCCGCCCGCAAACCCCCTGGACCCCTCCACCTGTCCCGGactgtcc
ccctcccctccctccttccctccctcctccccttccccctaccCGCACGC
CCATAtcgacttcctctcccagcacaATCAATGGTTACCTTCCCCTTTGA
CGAAGACGGAGCCCCCCCTGGACCGCATCCTTCGACCGGAGCGTGTGTAT
GTGATCGACGTGGAGGTGACCGTCCCTGACTCCGAGACCAACGCCATGCT
CGGGAATTTCATGCTCTTCGTCGACCTTTTCACCAAGGACGATGATCTCT
TAGCCCACTCCGCCCGCCCGCTCATCCTCACCTACCGGTCTCCCTGGATC
CGCttctttcgctccctcctcctcgcccccgtcctcgccctcggaTTCGC
CCAGGAGGCCCAAGTCCTCCGGGTCACTTTCTTCGACCGCTTCCGGGAGT
CTCTGGCCCACCCGCTTGCCCACGCCCGTGTTCGCCTTTCGTCCCCACGC
CTGCACCTGTATAAAGCCAGCATGAGCATTACGGCGCAATTGAATTGGCT
GCAATTCGTTATGTACAATTGGTTCTACACCACCGCGTTCTTAATCATCC
TTTTGATCAGTTCCATAGAGGCAGCCGTCGTGGGTTTTCTGTACGTATGG
TCCCaactggagggggaggaggcggaggcgagggaggaggggaaggagga
ggaggctggctgGTACATCCATCCTGGGGACAGcctgaggggaagggatg
gcttgggagggagggaaggggcaagGCAGGCATTCGTGCCCGGCTACCAT
CATTATCACGTGGCGAAtgacgaggcggaggtgtTGTTGGgcgcggggga
agggcaggggggaagggagggagggagggaggggggacgggagggaggga
gggaaagcgccgGAGTGCAGGTAGCGGGCATTtcgcgaggagaagaggga
ttaggaggcagcgagggagggggaggggaaggaggcgagccTGTCTCTTC
GACCAATCGGAGCGTCTTCTtggtggacgacgagggggggcaaGTGGAAG
GGGTtagggcggagggaggaggggaaggaggggtggagggagggaggggg
ggagtaGAGCCTCTGAATGGCTCAAGAGGTCCGACAGTCGTCCCTGTATC
GTCGAATCAGAGAGAgagtgcgggaggaggggaggaagaaggggaagtgc
AGTCGCAAAGCGTTCCAGGGCGCAGGCAGCACCATCACCATCCCGCGcat
gaggagggcgaggacgacgacgatgacttGTTGTTGGGAGCCCCTGAGAG
TTGAATGCTCCGGCTCCTAGACGTGGGCTTGGAGATAGGGCGCGGTCTGG
GCCTGGTGCGGTCCACGTCCTTCATTGAGgaaatggaaggactGATTTTC
CGCtacgcgtcctccctcctcgccacgGCGCTCAAGCTCCTCCAGTACCT
CTTCTTGGGCCTGGCTCTCATCACCTCCGCCACTGCCCTCTACACTGTCG
CCTATCAACTCATCATGCCGACGAAGCTGCACGAGAAGGAGCTCTTCTTT
GACTACTTCCCGCCCGCAAACCCCCTGGACCCCTCCACCTGTCCCGGact
gtccccctcccctccctccttccctccctcctccccttccccctaccCGC
ACGCCCATAtcgacttcctctcccagcacaATCAATGGTTACCTTCCCCT
TTGACGAAGACGGAGCCCCCCCTGGACCGCATCCTTCGACCGGAGCGTGT
GTATGTGATCGACGTGGAGGTGACCGTCCCTGACTCCGAGACCAACGCCA
TGCTCGGGAATTTCATGCTCTTCGTCGACCTTTTCACCAAGGACGATGAT
CTCTTAGCCCACTCCGCCCGCCCGCTCATCCTCACCTACCGGTCTCCCTG
GATCCGCttctttcgctccctcctcctcgcccccgtcctcgccctcggaT
TCGCCCAGGAGGCCCAAGTCCTCCGGGTCACTTTCTTCGACCGCTTCCGG
GAGTCTCTGGCCCACCCGCTTGCCCACGCCCGTGTTCGCCTTTCGTCCCC
ACGCCTGCACCTGTATAAAGCCAGCATGAGCATTACGGCGCAATTGAATT
GGCTGCAATTCGTTATGTACAATTGGTTCTACACCACCGCGTTCTTAATC
ATCCTTTTGATCAGTTCCATAGAGGCAGCCGTCGTGGGTTTTCTGTACGT
ATGGTCCCaactggagggggaggaggcggaggcgagggaggaggggaagg
aggaggaggctggctgGTACATCCATCCTGGGGACAGcctgaggggaagg
gatggcttgggagggagggaaggggcaagGCAGGCATTCGTGCCCGGCTA
CCATCATTATCACGTGGCGAAtgacgaggcggaggtgtTGTTGGgcgcgg
gggaagggcaggggggaagggagggagggagggaggggggacgggaggga
gggagggaaagcgccgGAGTGCAGGTAGCGGGCATTtcgcgaggagaaga
gggattaggaggcagcgagggagggggaggggaaggaggcgagccTGTCT
CTTCGACCAATCGGAGCGTCTTCTtggtggacgacgagggggggcaaGTG
GAAGGGGTtagggcggagggaggaggggaaggaggggtggagggagggag
ggggggagtaGAGCCTCTGAATGGCTCAAGAGGTCCGACAGTCGTCCCTG
TATCGTCGAATCAGAGAGAgagtgcgggaggaggggaggaagaaggggaa
gtgcAGTCGCAAAGCGTTCCAGGGCGCAGGCAGCACCATCACCATCCCGC
GcatgaggagggcgaggacgacgacgatgacttGTTGTTGGGAGCCCCTG
AGAGTTGAATGCTCCGGCTCCTAGACGTGGGCTTGGAGATAGGGCGCGGT
CTGGGCCTGGTGCGGTCCACGTCCTTCATTGAGgaaatggaaggactGAT
TTTCCGCtacgcgtcctccctcctcgccacgGCGCTCAAGCTCCTCCAGT
ACCTCTTCTTGGGCCTGGCTCTCATCACCTCCGCCACTGCCCTCTACACT
GTCGCCTATCAACTCATCATGCCGACGAAGCTGCACGAGAAGGAGCTCTT
CTTTGACTACTTCCCGCCCGCAAACCCCCTGGACCCCTCCACCTGTCCCG
Gactgtccccctcccctccctccttccctccctcctccccttccccctac
cCGCACGCCCATAtcgacttcctctcccagcacaATCAATGGTTACCTTC
CCCTTTGACGAAGACGGAGCCCCCCCTGGACCGCATCCTTCGACCGGAGC
GTGTGTATGTGATCGACGTGGAGGTGACCGTCCCTGACTCCGAGACCAAC
GCCATGCTCGGGAATTTCATGCTCTTCGTCGACCTTTTCACCAAGGACGA
TGATCTCTTAGCCCACTCCGCCCGCCCGCTCATCCTCACCTACCGGTCTC
CCTGGATCCGCttctttcgctccctcctcctcgcccccgtcctcgccctc
ggaTTCGCCCAGGAGGCCCAAGTCCTCCGGGTCACTTTCTTCGACCGCTT
CCGGGAGTCTCTGGCCCACCCGCTTGCCCACGCCCGTGTTCGCCTTTCGT
CCCCACGCCTGCACCTGTATAAAGCCAGCATGAGCATTACGGCGCAATTG
AATTGGCTGCAATTCGTTATGTACAATTGGTTCTACACCACCGCGTTCTT
AATCATCCTTTTGATCAGTTCCATAGAGGCAGCCGTCGTGGGTTTTCTGT
ACGTATGGTCCCaactggagggggaggaggcggaggcgagggaggagggg
aaggaggaggaggctggctgGTACATCCATCCTGGGGACAGcctgagggg
aagggatggcttgggagggagggaaggggcaagGCAGGCATTCGTGCCCG
GCTACCATCATTATCACGTGGCGAAtgacgaggcggaggtgtTGTTGGgc
gcgggggaagggcaggggggaagggagggagggagggaggggggacggga
gggagggagggaaagcgccgGAGTGCAGGTAGCGGGCATTtcgcgaggag
aagagggattaggaggcagcgagggagggggaggggaaggaggcgagccT
GTCTCTTCGACCAATCGGAGCGTCTTCTtggtggacgacgagggggggca
aGTGGAAGGGGTtagggcggagggaggaggggaaggaggggtggagggag
ggagggggggagtaGAGCCTCTGAATGGCTCAAGAGGTCCGACAGTCGTC
CCTGTATCGTCGAATCAGAGAGAgagtgcgggaggaggggaggaagaagg
ggaagtgcAGTCGCAAAGCGTTCCAGGGCGCAGGCAGCACCATCACCATC
CCGCGcatgaggagggcgaggacgacgacgatgacttGTTGTTGGGAGCC
CCTGAGAGTTGA back to top
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