EWM23562.1, cds7112 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23562.1 vs. NCBI_GenBank
Match: gi|585104686|gb|EWM23562.1| (bernardinelli-seip congenital lipodystrophy 2 protein variant 2 [Nannochloropsis gaditana]) HSP 1 Score: 1032.71 bits (2669), Expect = 0.000e+0 Identity = 517/517 (100.00%), Postives = 517/517 (100.00%), Query Frame = 0
Query: 1 MLRLLDVGLEIGRGLGLVRSTSFIEEMEGLIFRYASSLLATALKLLQYLFLGLALITSATALYTVAYQLIMPTKLHEKELFFDYFPPANPLDPSTCPGLSPSPPSFPPSSPSPYPHAHIDFLSQHNQWLPSPLTKTEPPLDRILRPERVYVIDVEVTVPDSETNAMLGNFMLFVDLFTKDDDLLAHSARPLILTYRSPWIRFFRSLLLAPVLALGFAQEAQVLRVTFFDRFRESLAHPLAHARVRLSSPRLHLYKASMSITAQLNWLQFVMYNWFYTTAFLIILLISSIEAAVVGFLYVWSQLEGEEAEAREEGKEEEAGWYIHPGDSLRGRDGLGGREGARQAFVPGYHHYHVANDEAEVLLGAGEGQGGREGGREGGREGGRESAGVQVAGISRGEEGLGGSEGGGGEGGEPVSSTNRSVFLVDDEGGQVEGVRAEGGGEGGVEGGRGGVEPLNGSRGPTVVPVSSNQRESAGGGEEEGEVQSQSVPGRRQHHHHPAHEEGEDDDDDLLLGAPES 517
MLRLLDVGLEIGRGLGLVRSTSFIEEMEGLIFRYASSLLATALKLLQYLFLGLALITSATALYTVAYQLIMPTKLHEKELFFDYFPPANPLDPSTCPGLSPSPPSFPPSSPSPYPHAHIDFLSQHNQWLPSPLTKTEPPLDRILRPERVYVIDVEVTVPDSETNAMLGNFMLFVDLFTKDDDLLAHSARPLILTYRSPWIRFFRSLLLAPVLALGFAQEAQVLRVTFFDRFRESLAHPLAHARVRLSSPRLHLYKASMSITAQLNWLQFVMYNWFYTTAFLIILLISSIEAAVVGFLYVWSQLEGEEAEAREEGKEEEAGWYIHPGDSLRGRDGLGGREGARQAFVPGYHHYHVANDEAEVLLGAGEGQGGREGGREGGREGGRESAGVQVAGISRGEEGLGGSEGGGGEGGEPVSSTNRSVFLVDDEGGQVEGVRAEGGGEGGVEGGRGGVEPLNGSRGPTVVPVSSNQRESAGGGEEEGEVQSQSVPGRRQHHHHPAHEEGEDDDDDLLLGAPES
Sbjct: 1 MLRLLDVGLEIGRGLGLVRSTSFIEEMEGLIFRYASSLLATALKLLQYLFLGLALITSATALYTVAYQLIMPTKLHEKELFFDYFPPANPLDPSTCPGLSPSPPSFPPSSPSPYPHAHIDFLSQHNQWLPSPLTKTEPPLDRILRPERVYVIDVEVTVPDSETNAMLGNFMLFVDLFTKDDDLLAHSARPLILTYRSPWIRFFRSLLLAPVLALGFAQEAQVLRVTFFDRFRESLAHPLAHARVRLSSPRLHLYKASMSITAQLNWLQFVMYNWFYTTAFLIILLISSIEAAVVGFLYVWSQLEGEEAEAREEGKEEEAGWYIHPGDSLRGRDGLGGREGARQAFVPGYHHYHVANDEAEVLLGAGEGQGGREGGREGGREGGRESAGVQVAGISRGEEGLGGSEGGGGEGGEPVSSTNRSVFLVDDEGGQVEGVRAEGGGEGGVEGGRGGVEPLNGSRGPTVVPVSSNQRESAGGGEEEGEVQSQSVPGRRQHHHHPAHEEGEDDDDDLLLGAPES 517
BLAST of EWM23562.1 vs. NCBI_GenBank
Match: gi|301115206|ref|XP_002905332.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262110121|gb|EEY68173.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 130.183 bits (326), Expect = 1.169e-29 Identity = 91/275 (33.09%), Postives = 148/275 (53.82%), Query Frame = 0
Query: 25 EEMEGLIFRYASSLLATALKLLQYLFLGLA-LITSATALYTVAYQLIMPTKLHEKELFFDYFPPANPLDPSTCPGLSPSPPSFPPSSPSPYPHAHIDFLSQHNQWLPSPLTKTEPPLDRILRPERVYVIDVEVTVPDSETNAMLGNFMLFVDLFTKDDDLLAHSARPLILTYRSPWIRFFRSLLLAPVLALGFAQEAQVLRVTFFDRFRESLAHPLAHARVRLSSPRLHLYKASMSITAQLNWLQFVMYNWFYTTAFLIILLISSIEAAVVGFLY 298
+E+ + Y LL A + Q +F G++ L +A+ LY Y L++P++ HE+++FF+Y +D G +P P+ A ++ +QW S + K + P +L P +Y + VE+TVP+S TNA +G FM+ L++ + LA SARP+ L +R+ R ALGF + AQ LRVT + ++ES +PL + L++P+L +Y A +++ AQL L+++MY+W TA L IL I +EA + LY
Sbjct: 33 DELTRMAKNYFKLLLLWAFRAAQ-IFAGISFLFATASLLYAFMYYLVIPSRFHEQDIFFNY--GNRHMDIYVQGGQTPIIPT-----------ASLELQDPVHQW-QSFVVKPDEPTQPVLVPGVMYDVIVELTVPESRTNAEVGVFMVSTTLYSNQERGLAASARPVTLHDMPAPVRWMRLAFWLMPYALGFTEPAQTLRVTAINGYQESTEYPLTRVDIELNTPKLQVYSAKLTVIAQLTGLRYLMYHWAVPTAILFILNIVFLEALALIILY 292
BLAST of EWM23562.1 vs. NCBI_GenBank
Match: gi|301115202|ref|XP_002905330.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262110119|gb|EEY68171.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 129.028 bits (323), Expect = 2.649e-29 Identity = 90/275 (32.73%), Postives = 147/275 (53.45%), Query Frame = 0
Query: 25 EEMEGLIFRYASSLLATALKLLQYLFLGLA-LITSATALYTVAYQLIMPTKLHEKELFFDYFPPANPLDPSTCPGLSPSPPSFPPSSPSPYPHAHIDFLSQHNQWLPSPLTKTEPPLDRILRPERVYVIDVEVTVPDSETNAMLGNFMLFVDLFTKDDDLLAHSARPLILTYRSPWIRFFRSLLLAPVLALGFAQEAQVLRVTFFDRFRESLAHPLAHARVRLSSPRLHLYKASMSITAQLNWLQFVMYNWFYTTAFLIILLISSIEAAVVGFLY 298
+E+ + Y LL A + Q +F G++ L +A+ LY Y L++P++ HE+++FF+Y +D G +P P+ A ++ +QW S + K + P +L P Y + V++TVP+S TNA +G FM+ L++ + LA SARP+ L +R+ R ALGF + AQ LRVT + ++ES +PL + L++P+L +Y A +++ AQL L+++MY+W TA L IL I +EA + LY
Sbjct: 33 DELTRMAKNYFKLLLLWAFRAAQ-IFAGISFLFATASLLYAFMYYLVIPSRFHEQDIFFNY--GNRHMDIYVQGGQTPIIPT-----------ASLELQDPVHQW-QSFVVKPDEPTQPVLVPGVTYDVIVKLTVPESRTNAEVGVFMVSTTLYSNQERGLAASARPVTLHDMPAPVRWMRLAFWLMPYALGFTEPAQTLRVTAINGYQESTEYPLTRVDIELNTPKLQVYSAKLTVIAQLTGLRYLMYHWAVPTAILFILNIVFLEALALIILY 292
BLAST of EWM23562.1 vs. NCBI_GenBank
Match: gi|1214676821|gb|OWY97815.1| (putative membrane protein [Phytophthora megakarya]) HSP 1 Score: 124.405 bits (311), Expect = 1.046e-27 Identity = 86/252 (34.13%), Postives = 136/252 (53.97%), Query Frame = 0
Query: 49 LFLGLA-LITSATALYTVAYQLIMPTKLHEKELFFDYFPPANPLDPSTCPGLSPSPPSFPPSSPSPYPHAHIDFLSQHNQWLPSPLTKTEPPLDRILRPERVYVIDVEVTVPDSETNAMLGNFMLFVDLFTKDDDLLAHSARPLILTYRSPWIRFFR-SLLLAPVLALGFAQEAQVLRVTFFDRFRESLAHPLAHARVRLSSPRLHLYKASMSITAQLNWLQFVMYNWFYTTAFLIILLISSIEAAVVGFLY 298
+F G++ L +A+ LY + Y L++P++ HE+E+FF+Y G+ + P S P A +D L +QW S ++++E +L P Y + VE+TVP+S NA +G FM+ LF LA SARP+ L +R+ R L P LGF + AQ LRVT + + E++ PL V L++P+L +Y A +++ AQL ++++MY+W TA L +L I +EA + LY
Sbjct: 56 VFAGISFLFATASVLYALLYYLVIPSRFHEQEIFFNY-------------GVRHGDITQPLHSR--VPTASLDLLDPEHQW-QSMVSQSEHTTQSVLVPGVKYDVIVELTVPESRVNADVGVFMVTTSLFEGTTRQLAVSARPVTLHDMPAPVRWIRLGFWLVP-YTLGFTEPAQTLRVTAINGYTENVEFPLTRVDVELNTPKLQVYSAKLTVIAQLTGVRYLMYHWAVPTAILFVLNIVFLEALALVILY 290
BLAST of EWM23562.1 vs. NCBI_GenBank
Match: gi|953497036|emb|CEG41345.1| (Uncharacterized conserved protein [Plasmopara halstedii]) HSP 1 Score: 123.25 bits (308), Expect = 3.487e-27 Identity = 97/310 (31.29%), Postives = 153/310 (49.35%), Query Frame = 0
Query: 23 FIEEMEGLIFRYASSLLATALKLLQYLFLGLA-LITSATALYTVAYQLIMPTKLHEKELFFDYFPPANPLDPSTCPGLSPSPPSFPPSSPSPYPHAHIDFLSQHNQW--LPSPLTKTEPPLDRILRPERVYVIDVEVTVPDSETNAMLGNFMLFVDLFTKDDDLLAHSARPLILTYRSPWIRFFRSLLLAPVLALGFAQEAQVLRVTFFDRFRESLAHPLAHARVRLSSPRLHLYKASMSITAQLNWLQFVMYNWFYTTAFLIILLISSIEAAVVGFLYVW--------------SQLEGEEAEAREEGK 315
F EE+ + Y+ LL A + Q +F ++ L A+ Y V Y L++P++ HE+++FF Y ++ +F P+ P A ++ L ++QW L S KT P +L P Y + VE+ VP+S TN +G FM+ LF + LA SARP+ L +R+ + LGF++ AQ LRVT + + ES+ PL + L++P L +Y A +++ AQL L+++MY+W TA L IL I +E+ + LY + LE A+ARE+ K
Sbjct: 33 FHEELMRVTKVYSKMLLFWAYRATQ-IFAAISFLFIMASLFYAVLYFLVIPSRFHEQDIFFHYGVHHKDMNKYM---------TFMPTVPK----ASLNLLDPNHQWQSLISTHKKTTQP---VLVPGVKYDVIVELIVPESRTNVDVGMFMVSTTLFNDQEKELATSARPVTLHDMPLPVRWLKLAFWVVPYTLGFSEPAQTLRVTMINGYEESVEFPLTRVDIELNTPELQVYSAKLTVIAQLTGLRYLMYHWAVPTALLFILNIVFLESLALVILYAVYAIPQLSEEAIVDSAVLEVTAADAREKAK 325
BLAST of EWM23562.1 vs. NCBI_GenBank
Match: gi|570327509|gb|ETO75457.1| (hypothetical protein F444_08958 [Phytophthora parasitica P1976]) HSP 1 Score: 121.709 bits (304), Expect = 1.296e-26 Identity = 92/275 (33.45%), Postives = 145/275 (52.73%), Query Frame = 0
Query: 25 EEMEGLIFRYASSLLATALKLLQYLFLGLA-LITSATALYTVAYQLIMPTKLHEKELFFDYFPPANPLDPSTCPGLSPSPPSFPPSSPSPYPHAHIDFLSQHNQWLPSPLTKTEPPLDRILRPERVYVIDVEVTVPDSETNAMLGNFMLFVDLFTKDDDLLAHSARPLILTYRSPWIRFFRSLLLAPVLALGFAQEAQVLRVTFFDRFRESLAHPLAHARVRLSSPRLHLYKASMSITAQLNWLQFVMYNWFYTTAFLIILLISSIEAAVVGFLY 298
EE+ + Y+ LL A + Q +F G++ L +A+ LY + Y L++P++ HE+++FF+Y +D G +P P A +D +QW S + K E +L P Y + VE+TVP+S TNA +G FM+ L+ + LA SARP+ L +R+ R ALGF + AQ LRVT + ++E +PL + L++P+L +Y A +++ AQL L+++MY+W TA L IL I +EA + LY
Sbjct: 33 EELTRVAKYYSKLLLVWAFRAAQ-VFAGISFLFVTASLLYALLYYLVIPSRFHEQDVFFNY--GDRHMDTYAHGGHTPY-----------VPKASLDLQDPIHQW-QSLVAKPEQSTQSVLVPGVKYDVIVELTVPESRTNAEVGVFMVSTTLYANREKGLATSARPVTLHDMPAPVRWMRLAFWLMPYALGFTEPAQTLRVTAINGYQEITEYPLTRVNIELNTPKLQVYSAKLTVIAQLTGLRYLMYHWAVPTAILFILNIVFVEALALVILY 292
BLAST of EWM23562.1 vs. NCBI_GenBank
Match: gi|566023851|gb|ETI46762.1| (hypothetical protein F443_08889 [Phytophthora parasitica P1569] >gi|567961149|gb|ETK86694.1| hypothetical protein L915_08722 [Phytophthora parasitica] >gi|567989858|gb|ETL40100.1| hypothetical protein L916_08653 [Phytophthora parasitica] >gi|568019108|gb|ETL93262.1| hypothetical protein L917_08554 [Phytophthora parasitica] >gi|568049546|gb|ETM46525.1| hypothetical protein L914_08603 [Phytophthora parasitica] >gi|570951317|gb|ETP16574.1| hypothetical protein F441_08868 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 120.939 bits (302), Expect = 2.367e-26 Identity = 92/275 (33.45%), Postives = 145/275 (52.73%), Query Frame = 0
Query: 25 EEMEGLIFRYASSLLATALKLLQYLFLGLA-LITSATALYTVAYQLIMPTKLHEKELFFDYFPPANPLDPSTCPGLSPSPPSFPPSSPSPYPHAHIDFLSQHNQWLPSPLTKTEPPLDRILRPERVYVIDVEVTVPDSETNAMLGNFMLFVDLFTKDDDLLAHSARPLILTYRSPWIRFFRSLLLAPVLALGFAQEAQVLRVTFFDRFRESLAHPLAHARVRLSSPRLHLYKASMSITAQLNWLQFVMYNWFYTTAFLIILLISSIEAAVVGFLY 298
EE+ + Y+ LL A + Q +F G++ L +A+ LY + Y L++P++ HE+++FF+Y +D G +P P A +D +QW S + K E +L P Y + VE+TVP+S TNA +G FM+ L+ + LA SARP+ L +R+ R ALGF + AQ LRVT + ++E +PL + L++P+L +Y A +++ AQL L+++MY+W TA L IL I +EA + LY
Sbjct: 33 EELTRVAKYYSKLLLVWAFRAAQ-VFAGISFLFVTASLLYALLYYLVIPSRFHEQDVFFNY--GDRHMDTYAHGGHTPY-----------VPKASLDLQDPIHQW-QSLVAKPEQSTQSVLVPGVKYDVIVELTVPESRTNAEVGVFMVSTTLYANREKGLATSARPVTLHDMPAPVRWMRLAFWLMPYALGFTEPAQTLRVTAINGYQEITEYPLTRVDIELNTPKLQVYSAKLTVIAQLTGLRYLMYHWAVPTAILFILNIVFVEALALVILY 292
BLAST of EWM23562.1 vs. NCBI_GenBank
Match: gi|970662256|gb|KUF99660.1| (DNA endonuclease [Phytophthora nicotianae]) HSP 1 Score: 120.168 bits (300), Expect = 3.810e-26 Identity = 92/275 (33.45%), Postives = 145/275 (52.73%), Query Frame = 0
Query: 25 EEMEGLIFRYASSLLATALKLLQYLFLGLA-LITSATALYTVAYQLIMPTKLHEKELFFDYFPPANPLDPSTCPGLSPSPPSFPPSSPSPYPHAHIDFLSQHNQWLPSPLTKTEPPLDRILRPERVYVIDVEVTVPDSETNAMLGNFMLFVDLFTKDDDLLAHSARPLILTYRSPWIRFFRSLLLAPVLALGFAQEAQVLRVTFFDRFRESLAHPLAHARVRLSSPRLHLYKASMSITAQLNWLQFVMYNWFYTTAFLIILLISSIEAAVVGFLY 298
EE+ + Y+ LL A + Q +F G++ L +A+ LY + Y L++P++ HE+++FF+Y +D G +P P A +D +QW S + K E +L P Y + VE+TVP+S TNA +G FM+ L+ + LA SARP+ L +R+ R ALGF + AQ LRVT + ++E +PL + L++P+L +Y A +++ AQL L+++MY+W TA L IL I +EA + LY
Sbjct: 33 EELTRVAKYYSKLLLVWAFRAAQ-VFAGISFLFVTASLLYALLYYLVIPSRFHEQDVFFNY--GDRHMDTYAHGGHTPY-----------VPKASLDLQDPIHQW-QSLVAKPEQSTQSVLVPGVKYDVIVELTVPESRTNAEVGVFMVSTTLYANREKGLATSARPVTLHDMPAPVRWMRLAFWLMPYALGFTEPAQTLRVTAINGYQEISEYPLTRVDIELNTPKLQVYSAKLTVIAQLTGLRYLMYHWAVPTAILFILNIVFVEALALVILY 292
BLAST of EWM23562.1 vs. NCBI_GenBank
Match: gi|298713827|emb|CBJ27199.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 117.857 bits (294), Expect = 3.958e-26 Identity = 75/226 (33.19%), Postives = 117/226 (51.77%), Query Frame = 0
Query: 39 LATALKLLQYLFLGLALITSATALYTVAYQLIMPTKLHEKELFFDYFPPANPLDPSTCPGLSPSPPSFPPSSPSPYPHAHIDFLSQHNQWLPSPLTKTEPPLDRILRPERVYVIDVEVTVPDSETNAMLGNFMLFVDLFTKDDDLLAHSARPLILTYRSPWIRFFRSLLLAPVLALGFAQEAQVLRVTFFDRFRESLAHPLAHARVRLSSPRLHLYKASMSITAQL 264
+A A+ LQYL L A++ SA LY Y L+MP +LH+K +F DY D +T + + +DFL++H QW PSPLT E ++L+ + Y + +E+ +P S N +G FM+ L + D+ LA SARP +L + S + + P+ G +E + + V D + E+ HPL ARV +SS R+ Y +S++IT Q+
Sbjct: 9 IAAAVTGLQYLLLFEAVLLSAVVLYGALYWLVMPLRLHDKPIFLDYS------DRATTGSATGT----------------VDFLARHTQWDPSPLTNVERLNTKVLKAGQHYKVGLELQMPTSYINRRIGVFMVHTTLLDEQDNELASSARPAMLPHTSALRKGVGMMFAWPLHLAGLRREEETIYVDCIDYYEENALHPLTKARVTVSSGRVQFYSSSINITPQV 212
BLAST of EWM23562.1 vs. NCBI_GenBank
Match: gi|570985268|gb|ETP44598.1| (hypothetical protein F442_08831 [Phytophthora parasitica P10297]) HSP 1 Score: 120.168 bits (300), Expect = 4.407e-26 Identity = 94/276 (34.06%), Postives = 148/276 (53.62%), Query Frame = 0
Query: 25 EEMEGLIFRYASSLLATALKLLQYLFLGLA-LITSATALYTVAYQLIMPTKLHEKELFFDYFPPANPLDPSTCPGLSPSPPSFPPSSPSPYPHAHIDFLSQHNQWLPSPLTKTEPPLDRILRPERVYVIDVEVTVPDSETNAMLGNFMLFVDLFTKDDDLLAHSARPLILTYRSPWIRFFR-SLLLAPVLALGFAQEAQVLRVTFFDRFRESLAHPLAHARVRLSSPRLHLYKASMSITAQLNWLQFVMYNWFYTTAFLIILLISSIEAAVVGFLY 298
EE+ + Y+ LL A + Q +F G++ L +A+ LY + Y L++P++ HE+++FF+Y +D G +P P A +D +QW S + K E +L P Y + VE+TVP+S TNA +G FM+ L+ + LA SARP+ L +R+ R + L P ALGF + AQ LRVT + ++E +PL + L++P+L +Y A +++ AQL L+++MY+W TA L IL I +EA + LY
Sbjct: 33 EELTRVAKYYSKLLLVWAFRAAQ-VFAGISFLFVTASLLYALLYYLVIPSRFHEQDVFFNY--GDRHMDTYAHGGHTPY-----------VPKASLDLQDPIHQW-QSLVAKPEQSTQSVLVPGVKYDVIVELTVPESRTNAEVGVFMVSTMLYANREKGLATSARPVTLHDMPAPVRWMRLAFWLMP-YALGFTEPAQTLRVTAINGYQEITEYPLTRVDIELNTPKLQVYSAKLTVIAQLTGLRYLMYHWAVPTAILFILNIVFVEALALVILY 292 The following BLAST results are available for this feature:
BLAST of EWM23562.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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