rna7127, rna7127 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7127
Unique Name	rna7127
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	767
Alignment location	CM002470.1:508087..510887 -

Link to JBrowse

Properties


Property Name	Value
Product	PDZ domain protein
Orig transcript id	gnl\|cribi\|Naga_101126g1.7356.mrna
Orig protein id	gnl\|cribi\|Naga_101126g1.7356
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:508087..510887 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101126g1	gene6892	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23563.1	cds7110	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7127	rna7127-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:508087..510887-
coding sequence from alignment at CM002470.1:508087..510887-

mRNA sequence

>rna7127 ID=rna7127|Name=rna7127|organism=Nannochloropsis gaditana|type=mRNA|length=767bp
CTTTCCTTCCTTTCTCTTGGCCTCCGGTGCCTCCCAGGCAATTTTGCAGC
GGACTTTATCCACGGGTCTTTACTTCCCTCTGGAAGATTTGTTCATGACG
CCCTGCACGGACGCCTTCGAGAACAACAGCTTCCTTGCCGCTTGGATGGC
CGGGAACTTGGCAGGGGCCTTGAACGGCGTGGCGCTTAATCCAGCCAGCG
CCATCAAATACCACACCTGGGGCCGCGACGACGCCTCCTTCTCCCGTACC
GCCCGCCTGATGTGGCGGGACGGGGGGTTGCGACCATTTGTTAAGGGAAC
TGCACCCACGATCTTGCGCGACGTGACCTTCGGGGGCGTGTACTCCGTGC
TTCGTAACGGACTCTTGCTTCACGTGGCTGAGGGTCGGGGCGAGAGCAGC
CCTTCCTCCCTCCTCCCCTCCCCCGCCTCCTCCCCCTCCCCCTCTTCCTC
CAATCCGCGCCGGCGGAGGAGCAAAGGGGACGCTTTGACCTTTATCCTCA
ACTTTATCGCCGCTGGCGTCGCCACGACTGTGTCGGGACCGTTCAACTAC
GTGAGACCGGAGGGAGGAGGGAGGGAGGGAGGGAGGAAGGGAGGACCAGG
TCGGAATCTGTGTCTCGGGTGAAGAAGTGGGGCTATTGGCTAAAAAAAAA
GTAATTTAAAGGTTTCGAGGGAGGTATTGATTGCCTGAAGGAGCTGCAGT
CCTCCTTGCCTGCCTGAAGGAGCTGCAGTCCTCCTTGCCGGGTCATCAGA
TTGGCCGCTTACACTTC

protein sequence of rna7127

>rna7127-protein ID=rna7127-protein|Name=rna7127|organism=Nannochloropsis gaditana|type=polypeptide|length=654bp
MLSGASPSLPPSIPALPPSLLFASPFSISPFSPLSSFVYLFCFLPSHLSL
PPSLPPSLSSSWPLLSNLSGLDLASLPPYTEQDEAAVSRAARLAALRQSP
ETQLARAPLLDTGVDEGGREGGNEGWLLTLTITEPGTLGLRVDIYKDENT
MESDSSFPPSSLPSSSSSTLCYGLIMTRTVTTTGAVAHALLALPPSAFPP
LPPSAPPAPVTTLHQRISLLSNAAWVGLNGKSLSHLTVTNIVPLVRRLPR
PFTLHLRLPPPLSSAQDGLPPAFLPPSFALHVEGSQEGGKEGRREDKAPL
PPYPTTSFTFSEPAAGIRFHTHPTLLEGSALQVAGFGRPPSLPPSLPPSL
PISLPSPAEVSGCVAIGDILMAVNNVPTLPLSLPQTTSLLHEPARPMTLA
LGKADPDLNLALRPALPGDTLELDLQVASFPAPSPPASLPPSLPPSLCVV
TGFVPTAQGPLEASGLCQVGDKLLAVRGEAAKGREGGGEGGTKGGGFRKG
VALLQALKGEDFPVALTFERRTCEGREEGGEGGREVFEVVIPKPPVTRWG
VVFGASVPEGEGEEAGREGGREVWPVIKAFQRLPGPAQRSGKIKPGMVLV
GVNGEGGEGGGEGRREGGREGEIVERVKRIRLPCTVTVRDMDVWTQMMAW
RPSG

mRNA from alignment at CM002470.1:508087..510887-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7127 ID=rna7127|Name=rna7127|organism=Nannochloropsis gaditana|type=mRNA|length=2801bp|location=Sequence derived from alignment at CM002470.1:508087..510887- (Nannochloropsis gaditana)
ACGACGCCCCATGATGCTTCCTTCTTTGACATTCGCGCCATTTTTTTTCT
TCTCTTACGATCGATGATCAGGAGGATGTGCACATCCACCTGGCTGGCGT
GTCGCCACCTCCTCCTTCTCCCTCCCCCCTTCCTCCTGCTCCCCCTCTTC
CTGCTCCCTCCTCCCCCTCCTCCTCCCCATCCTTCCCCTCCTCTGTCACC
CGCACGCACATTTCTCCGGGAGCAAGGCAACAGGGCTCGGGGGAGGGCGG
GGCAAGGGGGGGAGGAGAGGAAGGAGAGGGAGAGGATCGAGAGCCTCCCC
TCGTCATTAAAATCCACAACCTTTCCGGGGATTTTCCCCGCCTGCGATGG
TCCTACCGACGACTCTTCTTCCCCTTCGTTCAGGTGCTGCACCCGTACTT
TTCTCCTTCCTTTCACCCTCATATTGCTCCTTGCAAACGCTTGATTGACT
CCTCCCTTCCTCCTATTGCGTTTCCTCCCACTTCTCAGGGGGAAGGTCTT
GCCGACGCCAAAATTCTACAGGGCCAAATCCGCCTCACTTTCCAGCTCAA
GCGCCGCGGCCTCGCTCCACAGGAGGAGGACGGGGAGGGCGGGAAGGAGG
GCGGGAGGGAAGGCGCGAGGGAGGAACCGGTTATTCTTCTTGCGTCTTCA
CAAGTGCAGCTTGGCAGTCTCGACTTGCGTTTCCAGGACGTGAAGGGGGG
ATTAGGCTGGCTTTACAACCTGCTGGCTTCCCTCTTCGCCTCCTCCGTCA
AGACCTACGTGCTCAGTACCCTTCTCGACCTCCTGGACGACCACATGACT
GCGCTCCTTGCCCTCCTCAACCATGCTGTCCGGTGCTTCCCCCTCCCTCC
CACCCTCTATCCCCGCCCTTCCCCCATCTCTCTTATTTGCTTCTCCTTTC
TCGATCTCTCCTTTTTCTCCTCTCTCCAGCTTTGTCTACCTTTTCTGTTT
CCTTCCCTCTCATCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTAGTT
CCTCCTGGCCCCTCCTCTCCAACCTTTCCGGCCTCGATCTTGCCTCCCTC
CCTCCCTACACTGAACAAGACGAAGCCGCTGTTTCTCGTGCCGCCCGCCT
TGCAGCCTTGCGACAGTCGCCCGAAACTCAGCTAGCGCGTGCTCCCTTGT
TGGATACGGGTGTGGACGAGGGAGGGAGGGAGGGAGGGAACGAGGGCTGG
TTGCTCACCTTGACCATCACCGAACCCGGGACCCTGGGTCTCCGCGTCGA
TATATATAAAGACGAGAATACCATGGAATCAGACTCCTCCTTTCCTCCGT
CCTCCCTCCCTTCCTCGTCCTCCTCCACGCTCTGCTACGGCCTAATCATG
ACCCGAACCGTTACCACTACGGGCGCCGTGGCCCATGCCCTCCTCGCCCT
CCCTCCCTCAGCTTTCCCCCCCCTCCCGCCTTCTGCCCCGCCCGCCCCAG
TCACCACCCTCCACCAGCGCATCTCTCTTCTCTCGAACGCGGCTTGGGTG
GGGTTGAACGGCAAGTCTCTCTCCCATCTCACCGTGACCAACATCGTTCC
CCTGGTCCGCCGGCTGCCTCGCCCTTTCACGCTTCATCTCCGCCTCCCTC
CTCCCCTCTCCTCCGCCCAAGATGGCCTTCCCCCTGCCTTCCTCCCTCCT
TCCTTTGCTCTTCATGTCGAGGGGTCTCAGGAGGGAGGGAAGGAGGGCAG
GAGGGAGGACAAGGCACCCCTCCCTCCCTACCCGACCACCAGTTTCACTT
TCTCGGAGCCTGCCGCTGGGATCCGCTTTCACACCCATCCGACCCTTTTA
GAGGGGAGCGCCCTCCAGGTGGCCGGCTTCGGACGCCCTCCTTCCCTTCC
TCCTTCCCTCCCCCCTTCCCTCCCCATCTCCCTGCCCAGCCCCGCCGAGG
TGTCTGGTTGCGTGGCCATTGGGGACATCTTGATGGCTGTCAACAACGTC
CCCACCCTCCCTCTTTCCCTTCCCCAAACCACCTCCCTCCTCCACGAGCC
CGCCCGCCCCATGACGTTGGCTCTGGGCAAGGCCGACCCTGACCTCAACC
TCGCCCTCCGTCCCGCCCTCCCCGGGGATACGCTTGAGCTGGACCTGCAA
GTGGCCTCTTTCCCTGCCCCTTCCCCTCCTGCCTCCCTCCCGCCCTCCCT
CCCTCCCTCGCTGTGTGTCGTGACGGGCTTTGTCCCGACGGCCCAAGGAC
CCTTGGAGGCCAGCGGCCTCTGTCAAGTGGGGGACAAGCTCCTTGCCGTG
CGGGGCGAGGCAGCGAAAGGGAGGGAAGGAGGAGGGGAGGGAGGAACCAA
AGGAGGGGGTTTCCGAAAAGGAGTCGCCTTGTTACAAGCATTGAAGGGGG
AAGACTTTCCGGTGGCCTTAACGTTTGAGAGACGGACGTGCGAAGGGAGG
GAGGAAGGGGGGGAGGGAGGGAGGGAGGTGTTTGAAGTGGTTATCCCAAA
GCCTCCCGTCACGCGTTGGGGAGTGGTGTTCGGTGCATCCGTCCCCGAGG
GCGAGGGAGAGGAGGCAGGGAGGGAGGGAGGGAGGGAGGTGTGGCCAGTC
ATCAAAGCGTTCCAACGTTTGCCAGGACCGGCTCAACGAAGTGGTAAGAT
CAAACCTGGAATGGTACTGGTGGGGGTCAATGGGGAGGGAGGGGAGGGAG
GAGGGGAGGGAAGGAGGGAGGGAGGGAGGGAGGGGGAGATTGTGGAGAGG
GTGAAGAGAATACGCCTGCCTTGCACAGTGACCGTTCGAGACATGGATGT
GTGGACCCAGATGATGGCTTGGCGGCCGTCAGGATAGGGATGAAGGGGGA
A

Coding sequence (CDS) from alignment at CM002470.1:508087..510887-

>rna7127 ID=rna7127|Name=rna7127|organism=Nannochloropsis gaditana|type=CDS|length=1965bp|location=Sequence derived from alignment at CM002470.1:508087..510887- (Nannochloropsis gaditana)
ATGCTGTCCGGTGCTTCCCCCTCCCTCCCACCCTCTATCCCCGCCCTTCC
CCCATCTCTCTTATTTGCTTCTCCTTTCTCGATCTCTCCTTTTTCTCCTC
TCTCCAGCTTTGTCTACCTTTTCTGTTTCCTTCCCTCTCATCTCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTTAGTTCCTCCTGGCCCCTCCTCTCCAA
CCTTTCCGGCCTCGATCTTGCCTCCCTCCCTCCCTACACTGAACAAGACG
AAGCCGCTGTTTCTCGTGCCGCCCGCCTTGCAGCCTTGCGACAGTCGCCC
GAAACTCAGCTAGCGCGTGCTCCCTTGTTGGATACGGGTGTGGACGAGGG
AGGGAGGGAGGGAGGGAACGAGGGCTGGTTGCTCACCTTGACCATCACCG
AACCCGGGACCCTGGGTCTCCGCGTCGATATATATAAAGACGAGAATACC
ATGGAATCAGACTCCTCCTTTCCTCCGTCCTCCCTCCCTTCCTCGTCCTC
CTCCACGCTCTGCTACGGCCTAATCATGACCCGAACCGTTACCACTACGG
GCGCCGTGGCCCATGCCCTCCTCGCCCTCCCTCCCTCAGCTTTCCCCCCC
CTCCCGCCTTCTGCCCCGCCCGCCCCAGTCACCACCCTCCACCAGCGCAT
CTCTCTTCTCTCGAACGCGGCTTGGGTGGGGTTGAACGGCAAGTCTCTCT
CCCATCTCACCGTGACCAACATCGTTCCCCTGGTCCGCCGGCTGCCTCGC
CCTTTCACGCTTCATCTCCGCCTCCCTCCTCCCCTCTCCTCCGCCCAAGA
TGGCCTTCCCCCTGCCTTCCTCCCTCCTTCCTTTGCTCTTCATGTCGAGG
GGTCTCAGGAGGGAGGGAAGGAGGGCAGGAGGGAGGACAAGGCACCCCTC
CCTCCCTACCCGACCACCAGTTTCACTTTCTCGGAGCCTGCCGCTGGGAT
CCGCTTTCACACCCATCCGACCCTTTTAGAGGGGAGCGCCCTCCAGGTGG
CCGGCTTCGGACGCCCTCCTTCCCTTCCTCCTTCCCTCCCCCCTTCCCTC
CCCATCTCCCTGCCCAGCCCCGCCGAGGTGTCTGGTTGCGTGGCCATTGG
GGACATCTTGATGGCTGTCAACAACGTCCCCACCCTCCCTCTTTCCCTTC
CCCAAACCACCTCCCTCCTCCACGAGCCCGCCCGCCCCATGACGTTGGCT
CTGGGCAAGGCCGACCCTGACCTCAACCTCGCCCTCCGTCCCGCCCTCCC
CGGGGATACGCTTGAGCTGGACCTGCAAGTGGCCTCTTTCCCTGCCCCTT
CCCCTCCTGCCTCCCTCCCGCCCTCCCTCCCTCCCTCGCTGTGTGTCGTG
ACGGGCTTTGTCCCGACGGCCCAAGGACCCTTGGAGGCCAGCGGCCTCTG
TCAAGTGGGGGACAAGCTCCTTGCCGTGCGGGGCGAGGCAGCGAAAGGGA
GGGAAGGAGGAGGGGAGGGAGGAACCAAAGGAGGGGGTTTCCGAAAAGGA
GTCGCCTTGTTACAAGCATTGAAGGGGGAAGACTTTCCGGTGGCCTTAAC
GTTTGAGAGACGGACGTGCGAAGGGAGGGAGGAAGGGGGGGAGGGAGGGA
GGGAGGTGTTTGAAGTGGTTATCCCAAAGCCTCCCGTCACGCGTTGGGGA
GTGGTGTTCGGTGCATCCGTCCCCGAGGGCGAGGGAGAGGAGGCAGGGAG
GGAGGGAGGGAGGGAGGTGTGGCCAGTCATCAAAGCGTTCCAACGTTTGC
CAGGACCGGCTCAACGAAGTGGTAAGATCAAACCTGGAATGGTACTGGTG
GGGGTCAATGGGGAGGGAGGGGAGGGAGGAGGGGAGGGAAGGAGGGAGGG
AGGGAGGGAGGGGGAGATTGTGGAGAGGGTGAAGAGAATACGCCTGCCTT
GCACAGTGACCGTTCGAGACATGGATGTGTGGACCCAGATGATGGCTTGG
CGGCCGTCAGGATAG

Synonyms

Publications