EWM23563.1, cds7110 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23563.1 vs. NCBI_GenBank
Match: gi|585104689|gb|EWM23563.1| (PDZ domain protein [Nannochloropsis gaditana]) HSP 1 Score: 1273.07 bits (3293), Expect = 0.000e+0 Identity = 654/654 (100.00%), Postives = 654/654 (100.00%), Query Frame = 0 Query: 1 MLSGASPSLPPSIPALPPSLLFASPFSISPFSPLSSFVYLFCFLPSHLSLPPSLPPSLSSSWPLLSNLSGLDLASLPPYTEQDEAAVSRAARLAALRQSPETQLARAPLLDTGVDEGGREGGNEGWLLTLTITEPGTLGLRVDIYKDENTMESDSSFPPSSLPSSSSSTLCYGLIMTRTVTTTGAVAHALLALPPSAFPPLPPSAPPAPVTTLHQRISLLSNAAWVGLNGKSLSHLTVTNIVPLVRRLPRPFTLHLRLPPPLSSAQDGLPPAFLPPSFALHVEGSQEGGKEGRREDKAPLPPYPTTSFTFSEPAAGIRFHTHPTLLEGSALQVAGFGRPPSLPPSLPPSLPISLPSPAEVSGCVAIGDILMAVNNVPTLPLSLPQTTSLLHEPARPMTLALGKADPDLNLALRPALPGDTLELDLQVASFPAPSPPASLPPSLPPSLCVVTGFVPTAQGPLEASGLCQVGDKLLAVRGEAAKGREGGGEGGTKGGGFRKGVALLQALKGEDFPVALTFERRTCEGREEGGEGGREVFEVVIPKPPVTRWGVVFGASVPEGEGEEAGREGGREVWPVIKAFQRLPGPAQRSGKIKPGMVLVGVNGEGGEGGGEGRREGGREGEIVERVKRIRLPCTVTVRDMDVWTQMMAWRPSG 654 MLSGASPSLPPSIPALPPSLLFASPFSISPFSPLSSFVYLFCFLPSHLSLPPSLPPSLSSSWPLLSNLSGLDLASLPPYTEQDEAAVSRAARLAALRQSPETQLARAPLLDTGVDEGGREGGNEGWLLTLTITEPGTLGLRVDIYKDENTMESDSSFPPSSLPSSSSSTLCYGLIMTRTVTTTGAVAHALLALPPSAFPPLPPSAPPAPVTTLHQRISLLSNAAWVGLNGKSLSHLTVTNIVPLVRRLPRPFTLHLRLPPPLSSAQDGLPPAFLPPSFALHVEGSQEGGKEGRREDKAPLPPYPTTSFTFSEPAAGIRFHTHPTLLEGSALQVAGFGRPPSLPPSLPPSLPISLPSPAEVSGCVAIGDILMAVNNVPTLPLSLPQTTSLLHEPARPMTLALGKADPDLNLALRPALPGDTLELDLQVASFPAPSPPASLPPSLPPSLCVVTGFVPTAQGPLEASGLCQVGDKLLAVRGEAAKGREGGGEGGTKGGGFRKGVALLQALKGEDFPVALTFERRTCEGREEGGEGGREVFEVVIPKPPVTRWGVVFGASVPEGEGEEAGREGGREVWPVIKAFQRLPGPAQRSGKIKPGMVLVGVNGEGGEGGGEGRREGGREGEIVERVKRIRLPCTVTVRDMDVWTQMMAWRPSG Sbjct: 1 MLSGASPSLPPSIPALPPSLLFASPFSISPFSPLSSFVYLFCFLPSHLSLPPSLPPSLSSSWPLLSNLSGLDLASLPPYTEQDEAAVSRAARLAALRQSPETQLARAPLLDTGVDEGGREGGNEGWLLTLTITEPGTLGLRVDIYKDENTMESDSSFPPSSLPSSSSSTLCYGLIMTRTVTTTGAVAHALLALPPSAFPPLPPSAPPAPVTTLHQRISLLSNAAWVGLNGKSLSHLTVTNIVPLVRRLPRPFTLHLRLPPPLSSAQDGLPPAFLPPSFALHVEGSQEGGKEGRREDKAPLPPYPTTSFTFSEPAAGIRFHTHPTLLEGSALQVAGFGRPPSLPPSLPPSLPISLPSPAEVSGCVAIGDILMAVNNVPTLPLSLPQTTSLLHEPARPMTLALGKADPDLNLALRPALPGDTLELDLQVASFPAPSPPASLPPSLPPSLCVVTGFVPTAQGPLEASGLCQVGDKLLAVRGEAAKGREGGGEGGTKGGGFRKGVALLQALKGEDFPVALTFERRTCEGREEGGEGGREVFEVVIPKPPVTRWGVVFGASVPEGEGEEAGREGGREVWPVIKAFQRLPGPAQRSGKIKPGMVLVGVNGEGGEGGGEGRREGGREGEIVERVKRIRLPCTVTVRDMDVWTQMMAWRPSG 654
BLAST of EWM23563.1 vs. NCBI_GenBank
Match: gi|695449223|ref|XP_009535179.1| (hypothetical protein PHYSODRAFT_523112 [Phytophthora sojae] >gi|348670496|gb|EGZ10318.1| hypothetical protein PHYSODRAFT_523112 [Phytophthora sojae]) HSP 1 Score: 70.0922 bits (170), Expect = 8.876e-9 Identity = 114/480 (23.75%), Postives = 179/480 (37.29%), Query Frame = 0 Query: 226 VGLNGKSLSHLTVTNIVPLVRRLPRPFTLHLRLPPPLSSAQDGLPPAFLPPSFALHVEGSQEGGKEGRREDKAPLPPYPTTSFTFSEPA-AGIRFHTHPTLLEGSALQVAGFGRPPSLPPSLPPSLPISLPSPAEVSGCVAIGDILMAVNNVPTLPLSLPQTTSLLHE-PARPMTLALGKADPDLNLALRPALPGDTLELDLQVASFPAPSPPASLPPSLPPSLCVVTGF--VPTAQGPLEASGLCQVGDKLLAVRGEAAKGREGGGEGGTKGGGFRKGVALLQALKGEDFPVALTF---------------ERRT-----CEGREEGGEGGRE---------------VFEVVIPKPPVTRWGVVFGASVPEGEGEEAGREGGREVWPVIKAFQRLPGPAQRSGKIKPGMVLVGVNGEGG------------------EGGGEGRREGGREGEIVERVKRIRLPCTVTVRDMDVWTQMM 648 + +NG S LTV + L+ LP PFT+ L P PA + RR+ P P + T FTF + G+R P L + V GF PAE+SG + IG +LM VNNV +L + ++L E +RP+T+ + PD + LR P +E +SF PPS V++ F VP+ + + L + GD LL V G + G F + + L+ + + P+ TF +RR+ E +E G+G E+V PK P+ G++FG E I+AF PGPA+++G ++PG ++ V G E + +R K+++ T+TVRD+++ ++M Sbjct: 790 LAINGLCCSKLTVEELRGLLDSLPLPFTMRFSLLPE--------DPA------------------KNRRQQMKPQPEFST--FTFRQEGPFGLRLRARP--LATCGVIVVGFTAKSD-----------GTKCPAELSGKIRIGQLLMKVNNVDLRFKTLSEVLAVLRELKSRPVTMQFATS-PDAVIKLRDWPPMIEME---DASSFACDDEDD--PPSTGRKYVVLSAFARVPSYA---QRTHLVEKGDVLLQVNDTPLTGPD--------YGNFAEIMEALREIASKKEPMRCTFVSREDYIAVRKLLQQQRRSDSKIESEEIKEAGDGSAAPPVNEDSVDILSSIPTKEIVFPKAPL---GILFGNWKDEA--------------IYIRAFISSPGPAEKTGLLRPGQAILQVCGHAVPRESTPGIIEEMILKVSLEAKAQDDDNSDDVNADSKRDKKMKY--TLTVRDLELEQELM 1192 The following BLAST results are available for this feature:
BLAST of EWM23563.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 2
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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