EWM23563.1, cds7110 (CDS) Nannochloropsis gaditana

Overview
NameEWM23563.1
Unique Namecds7110
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:508101..510065 -

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Properties
Property NameValue
Protein idEWM23563.1
ProductPDZ domain protein
Orig transcript idgnl|cribi|Naga_101126g1.7356.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:508101..510065 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
Homology
BLAST of EWM23563.1 vs. NCBI_GenBank
Match: gi|585104689|gb|EWM23563.1| (PDZ domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1273.07 bits (3293), Expect = 0.000e+0
Identity = 654/654 (100.00%), Postives = 654/654 (100.00%), Query Frame = 0
Query:    1 MLSGASPSLPPSIPALPPSLLFASPFSISPFSPLSSFVYLFCFLPSHLSLPPSLPPSLSSSWPLLSNLSGLDLASLPPYTEQDEAAVSRAARLAALRQSPETQLARAPLLDTGVDEGGREGGNEGWLLTLTITEPGTLGLRVDIYKDENTMESDSSFPPSSLPSSSSSTLCYGLIMTRTVTTTGAVAHALLALPPSAFPPLPPSAPPAPVTTLHQRISLLSNAAWVGLNGKSLSHLTVTNIVPLVRRLPRPFTLHLRLPPPLSSAQDGLPPAFLPPSFALHVEGSQEGGKEGRREDKAPLPPYPTTSFTFSEPAAGIRFHTHPTLLEGSALQVAGFGRPPSLPPSLPPSLPISLPSPAEVSGCVAIGDILMAVNNVPTLPLSLPQTTSLLHEPARPMTLALGKADPDLNLALRPALPGDTLELDLQVASFPAPSPPASLPPSLPPSLCVVTGFVPTAQGPLEASGLCQVGDKLLAVRGEAAKGREGGGEGGTKGGGFRKGVALLQALKGEDFPVALTFERRTCEGREEGGEGGREVFEVVIPKPPVTRWGVVFGASVPEGEGEEAGREGGREVWPVIKAFQRLPGPAQRSGKIKPGMVLVGVNGEGGEGGGEGRREGGREGEIVERVKRIRLPCTVTVRDMDVWTQMMAWRPSG 654
            MLSGASPSLPPSIPALPPSLLFASPFSISPFSPLSSFVYLFCFLPSHLSLPPSLPPSLSSSWPLLSNLSGLDLASLPPYTEQDEAAVSRAARLAALRQSPETQLARAPLLDTGVDEGGREGGNEGWLLTLTITEPGTLGLRVDIYKDENTMESDSSFPPSSLPSSSSSTLCYGLIMTRTVTTTGAVAHALLALPPSAFPPLPPSAPPAPVTTLHQRISLLSNAAWVGLNGKSLSHLTVTNIVPLVRRLPRPFTLHLRLPPPLSSAQDGLPPAFLPPSFALHVEGSQEGGKEGRREDKAPLPPYPTTSFTFSEPAAGIRFHTHPTLLEGSALQVAGFGRPPSLPPSLPPSLPISLPSPAEVSGCVAIGDILMAVNNVPTLPLSLPQTTSLLHEPARPMTLALGKADPDLNLALRPALPGDTLELDLQVASFPAPSPPASLPPSLPPSLCVVTGFVPTAQGPLEASGLCQVGDKLLAVRGEAAKGREGGGEGGTKGGGFRKGVALLQALKGEDFPVALTFERRTCEGREEGGEGGREVFEVVIPKPPVTRWGVVFGASVPEGEGEEAGREGGREVWPVIKAFQRLPGPAQRSGKIKPGMVLVGVNGEGGEGGGEGRREGGREGEIVERVKRIRLPCTVTVRDMDVWTQMMAWRPSG
Sbjct:    1 MLSGASPSLPPSIPALPPSLLFASPFSISPFSPLSSFVYLFCFLPSHLSLPPSLPPSLSSSWPLLSNLSGLDLASLPPYTEQDEAAVSRAARLAALRQSPETQLARAPLLDTGVDEGGREGGNEGWLLTLTITEPGTLGLRVDIYKDENTMESDSSFPPSSLPSSSSSTLCYGLIMTRTVTTTGAVAHALLALPPSAFPPLPPSAPPAPVTTLHQRISLLSNAAWVGLNGKSLSHLTVTNIVPLVRRLPRPFTLHLRLPPPLSSAQDGLPPAFLPPSFALHVEGSQEGGKEGRREDKAPLPPYPTTSFTFSEPAAGIRFHTHPTLLEGSALQVAGFGRPPSLPPSLPPSLPISLPSPAEVSGCVAIGDILMAVNNVPTLPLSLPQTTSLLHEPARPMTLALGKADPDLNLALRPALPGDTLELDLQVASFPAPSPPASLPPSLPPSLCVVTGFVPTAQGPLEASGLCQVGDKLLAVRGEAAKGREGGGEGGTKGGGFRKGVALLQALKGEDFPVALTFERRTCEGREEGGEGGREVFEVVIPKPPVTRWGVVFGASVPEGEGEEAGREGGREVWPVIKAFQRLPGPAQRSGKIKPGMVLVGVNGEGGEGGGEGRREGGREGEIVERVKRIRLPCTVTVRDMDVWTQMMAWRPSG 654          
BLAST of EWM23563.1 vs. NCBI_GenBank
Match: gi|695449223|ref|XP_009535179.1| (hypothetical protein PHYSODRAFT_523112 [Phytophthora sojae] >gi|348670496|gb|EGZ10318.1| hypothetical protein PHYSODRAFT_523112 [Phytophthora sojae])

HSP 1 Score: 70.0922 bits (170), Expect = 8.876e-9
Identity = 114/480 (23.75%), Postives = 179/480 (37.29%), Query Frame = 0
Query:  226 VGLNGKSLSHLTVTNIVPLVRRLPRPFTLHLRLPPPLSSAQDGLPPAFLPPSFALHVEGSQEGGKEGRREDKAPLPPYPTTSFTFSEPA-AGIRFHTHPTLLEGSALQVAGFGRPPSLPPSLPPSLPISLPSPAEVSGCVAIGDILMAVNNVPTLPLSLPQTTSLLHE-PARPMTLALGKADPDLNLALRPALPGDTLELDLQVASFPAPSPPASLPPSLPPSLCVVTGF--VPTAQGPLEASGLCQVGDKLLAVRGEAAKGREGGGEGGTKGGGFRKGVALLQALKGEDFPVALTF---------------ERRT-----CEGREEGGEGGRE---------------VFEVVIPKPPVTRWGVVFGASVPEGEGEEAGREGGREVWPVIKAFQRLPGPAQRSGKIKPGMVLVGVNGEGG------------------EGGGEGRREGGREGEIVERVKRIRLPCTVTVRDMDVWTQMM 648
            + +NG   S LTV  +  L+  LP PFT+   L P          PA                  + RR+   P P + T  FTF +    G+R    P  L    + V GF                    PAE+SG + IG +LM VNNV     +L +  ++L E  +RP+T+    + PD  + LR   P   +E     +SF         PPS      V++ F  VP+     + + L + GD LL V      G +         G F + +  L+ +  +  P+  TF               +RR+      E  +E G+G                    E+V PK P+   G++FG    E                 I+AF   PGPA+++G ++PG  ++ V G                     E   +            +R K+++   T+TVRD+++  ++M
Sbjct:  790 LAINGLCCSKLTVEELRGLLDSLPLPFTMRFSLLPE--------DPA------------------KNRRQQMKPQPEFST--FTFRQEGPFGLRLRARP--LATCGVIVVGFTAKSD-----------GTKCPAELSGKIRIGQLLMKVNNVDLRFKTLSEVLAVLRELKSRPVTMQFATS-PDAVIKLRDWPPMIEME---DASSFACDDEDD--PPSTGRKYVVLSAFARVPSYA---QRTHLVEKGDVLLQVNDTPLTGPD--------YGNFAEIMEALREIASKKEPMRCTFVSREDYIAVRKLLQQQRRSDSKIESEEIKEAGDGSAAPPVNEDSVDILSSIPTKEIVFPKAPL---GILFGNWKDEA--------------IYIRAFISSPGPAEKTGLLRPGQAILQVCGHAVPRESTPGIIEEMILKVSLEAKAQDDDNSDDVNADSKRDKKMKY--TLTVRDLELEQELM 1192          
The following BLAST results are available for this feature:
BLAST of EWM23563.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585104689|gb|EWM23563.1|0.000e+0100.00PDZ domain protein [Nannochloropsis gaditana][more]
gi|695449223|ref|XP_009535179.1|8.876e-923.75hypothetical protein PHYSODRAFT_523112 [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7127rna7127Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications