rna7121, rna7121 (mRNA) Nannochloropsis gaditana

Overview
Namerna7121
Unique Namerna7121
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length970
Alignment locationCM002470.1:495480..496675 +

Link to JBrowse

Properties
Property NameValue
Product40s ribosomal protein s13
Orig transcript idgnl|cribi|Naga_100638g4.3215.mrna
Orig protein idgnl|cribi|Naga_100638g4.3215
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:495480..496675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100638g4gene6886Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7121rna7121-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23570.1cds7104Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7121 ID=rna7121|Name=rna7121|organism=Nannochloropsis gaditana|type=mRNA|length=970bp
AGGTCATGAAGACAGTACGGATGGCTGTTGATGCGTAATGTTTCTGTACA
TAGCTCCCGTTTCTAGTCTACCCTGGTCCGAAGAAAGCCCCTGCACATAT
GCACCCGTACAAACATGAAATCCGTGCTCGCACACCGCCACAACCTTGTT
GCTCATGTTTTTACACATATGATCGACCGCACTGACAAATTCACAGAGAA
ATGCCGCACTCCTATGGGTATCGAGCGCGGACGCGCTCTATGTTTCGTCG
GGACTTCGGGGAGCATGGTGTAAACCCCTTGTCCATCTACATGCGCAACT
ATAAGGTGGGCGATGTGGTGGATATCAAAGCCAACCCTTCCATTCAAAAG
GGCATGCCGTTCAAGGGCTACCACGGTCGCACGGGTGTGGTCTACAACGT
GACGAAACGGGCCTTAGGCGTGGAGGTGAACAAATTGGTGAACGGGAAGA
TCATCAAGAAGAAGATCAACGTCCGCGTCGAGCACCTTCGCCCATCCACT
TCCCGAAAAGAGTGGATCGAGCGGGTCCGACAAAACGAGCTCCAGAAGAA
GGCGGTCAAAGCGGGGGAGAAGGAGTACCGAGAGTTAAAAAGGTTGCCCA
AGGCTCCCAAGGAGGCGTTTACGTTCAAGTACGACGGAGAGGTGCAGACC
GTACAGGCGATCCCCTTCGTGGACCTGGTCTAAAAAGGTGAAGAGACGGA
GAGGATGGAGGGAGGAAGGCGGGGGAGATAGGTGGGGGGTTGAAGATGGG
CGTCACGGAGCCAGCGACGGAGGTAGGTTGACACATTTGTGCCTCGGGAT
GGGCTTCTATAAATCTCCTTGAGTACTACTTCGCATAGACATGGAGAAGA
GACAGAGTCAAGGGAGGAAAGCGAAATCAGGGGGCACATGTGTGAGGATC
TGCTGCAGGGTGGGGCTCGGTGGGCCATGCGGACACCTGGGAAAAAGAAG
GGACGGAAGGATAGAAGTGC
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protein sequence of rna7121

>rna7121-protein ID=rna7121-protein|Name=rna7121|organism=Nannochloropsis gaditana|type=polypeptide|length=164bp
MGRMHSKGKGMASSAIPYKRTPPSWAKATAKDVEEHVCKLAKKGLTPSNI
GVILRDSYGIAQVKAVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRK
HLERNRKDKDSKFRLILIESRIHRLVRRVGDGGNEGGEGRRGGDREEGRD
RAWGGRKEWRSKYT
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mRNA from alignment at CM002470.1:495480..496675+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7121 ID=rna7121|Name=rna7121|organism=Nannochloropsis gaditana|type=mRNA|length=1196bp|location=Sequence derived from alignment at CM002470.1:495480..496675+ (Nannochloropsis gaditana)
ATTCCGTGACGTCCTTCTCCTGTCCAATCGATAAGAATCTTACGCACACT
GTACGCCTATCATCACACAGGCGTGTTTACAACCGTGCTCATTCCGGCCC
GGTAAATACTCCAGCGAAGGTACGGAAAGGAAGAATGGCCAGCCATCACG
GCAAGCCTAAGAACGACGTGAATATTTTAAGTGATGAAACGATAAGGGCA
TGTGTGCTACATCAAGCTATGCCTACATGAATGCTCTTCTTTCCGTGTGA
AGGCTTCATCGAGGGCAATGTGGGCTCTGGAGATGCTGATTTGCCTTTCA
TGAGGGGCCGTGGAAATGGGTTGATCGAAAGCCTTCGGGCTCTCCTTTCT
GCTATCGTGTCTCCGCCCCCACACACTAAAATTTTGCGCGTTTTCGGGCG
TACGGGGTTTCTTTGTACTGTAGAAGTTGTTCCCCACGTCTGACGAGCTT
CTTCTGTCTTCATCATTCCACGCAACTCAGATGGGTCGCATGCACTCGAA
AGGCAAGGGTATGGCCTCCTCAGCCATCCCCTACAAGCGCACGCCGCCGT
CCTGGGCGAAAGCCACCGCCAAGGACGTAGAGGAGCACGTATGCAAATTG
GCGAAGAAAGGCTTGACCCCTTCCAACATTGGTGTCATCCTCAGGGATTC
GTATGGCATTGCTCAGGTAATTAGGGGATAATCCGGATgtgagaggaaga
tgggcgGTGCAACTGTCCAGCCTGGCACTGGGAAAAGGAGTCGTATTGCT
CACTCTTTCCCCCGTGCCCACGCCCTTGGTGTGCGCAGGTGAAGGCCGTG
ACGGGTTCCAAAATCCTCCGGCTCCTGAAGAAGAACTTGCTGGCCCCTGA
GATTCCCGAGGATTTGTACATGCTCATCaagaaggcggtggccgTGCGCA
AGCATTTAGAGCGCAACCGCAAAGACAAGGACAGCAAGTTCCGCCTCATC
TTGATCGAGAGTCGCATTCATCGATTGGTAAGGCGGgtcggggacggagg
caacgaggggggggagggaaggagggggggagatagggaggaggggaggg
accgggcttggggtggaaggaaggaatggagatCCAAGTACACATGAATG
TTGAGGAAACAGAGACCggatgatggagggggaggcgagcatgTAGATAT
CTCTGCAAGGCATCCGCATTGCCTTGTCTtacctgctcctcctcct
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Coding sequence (CDS) from alignment at CM002470.1:495480..496675+

>rna7121 ID=rna7121|Name=rna7121|organism=Nannochloropsis gaditana|type=CDS|length=990bp|location=Sequence derived from alignment at CM002470.1:495480..496675+ (Nannochloropsis gaditana)
ATGGGTCGCATGCACTCGAAAGGCAAGGGTATGGCCTCCTCAGCCATCCC
CTACAAGCGCACGCCGCCGTCCTGGGCGAAAGCCACCGCCAAGGACGTAG
AGGAGCACGTATGCAAATTGGCGAAGAAAGGCTTGACCCCTTCCAACATT
GGTGTCATCCTCAGGGATTCGTATGGCATTGCTCAGGTGAAGGCCGTGAC
GGGTTCCAAAATCCTCCGGCTCCTGAAGAAGAACTTGCTGGCCCCTGAGA
TTCCCGAGGATTTGTACATGCTCATCaagaaggcggtggccgTGCGCAAG
CATTTAGAGCGCAACCGCAAAGACAAGGACAGCAAGTTCCGCCTCATCTT
GATCGAGAGTCGCATTCATCGATTGGTAAGGCGGgtcggggacggaggca
acgaggggggggagggaaggagggggggagatagggaggaggggagggac
cgggcttggggtggaaggaaggaatggagatCCAAGTACACATGAATGGG
TCGCATGCACTCGAAAGGCAAGGGTATGGCCTCCTCAGCCATCCCCTACA
AGCGCACGCCGCCGTCCTGGGCGAAAGCCACCGCCAAGGACGTAGAGGAG
CACGTATGCAAATTGGCGAAGAAAGGCTTGACCCCTTCCAACATTGGTGT
CATCCTCAGGGATTCGTATGGCATTGCTCAGGTGAAGGCCGTGACGGGTT
CCAAAATCCTCCGGCTCCTGAAGAAGAACTTGCTGGCCCCTGAGATTCCC
GAGGATTTGTACATGCTCATCaagaaggcggtggccgTGCGCAAGCATTT
AGAGCGCAACCGCAAAGACAAGGACAGCAAGTTCCGCCTCATCTTGATCG
AGAGTCGCATTCATCGATTGGTAAGGCGGgtcggggacggaggcaacgag
gggggggagggaaggagggggggagatagggaggaggggagggaccgggc
ttggggtggaaggaaggaatggagatCCAAGTACACATGA
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Synonyms
Publications