EWM23570.1, cds7104 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23570.1 vs. NCBI_GenBank
Match: gi|585104702|gb|EWM23570.1| (40s ribosomal protein s13 [Nannochloropsis gaditana]) HSP 1 Score: 329.331 bits (843), Expect = 4.556e-114 Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0 Query: 1 MGRMHSKGKGMASSAIPYKRTPPSWAKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKAVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLVRRVGDGGNEGGEGRRGGDREEGRDRAWGGRKEWRSKYT 164 MGRMHSKGKGMASSAIPYKRTPPSWAKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKAVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLVRRVGDGGNEGGEGRRGGDREEGRDRAWGGRKEWRSKYT Sbjct: 1 MGRMHSKGKGMASSAIPYKRTPPSWAKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKAVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLVRRVGDGGNEGGEGRRGGDREEGRDRAWGGRKEWRSKYT 164
BLAST of EWM23570.1 vs. NCBI_GenBank
Match: gi|695436900|ref|XP_009532082.1| (hypothetical protein PHYSODRAFT_355091 [Phytophthora sojae] >gi|348671929|gb|EGZ11749.1| hypothetical protein PHYSODRAFT_355091 [Phytophthora sojae]) HSP 1 Score: 223.402 bits (568), Expect = 2.179e-72 Identity = 107/127 (84.25%), Postives = 119/127 (93.70%), Query Frame = 0 Query: 1 MGRMHSKGKGMASSAIPYKRTPPSWAKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKAVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLVR 127 MGRMHS+GKGM+ SA PYKR+PPSW K +A+DVE+H+CK AKKGLTPS IGVILRDS+GIAQVK+VTGSK+LRLLKKN LAPE+PEDLYMLIKKAVAVRKHLERNR+DKDSKFRLILIESRIHRL R Sbjct: 1 MGRMHSRGKGMSKSARPYKRSPPSWLKVSAEDVEDHICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKVLRLLKKNGLAPELPEDLYMLIKKAVAVRKHLERNRQDKDSKFRLILIESRIHRLAR 127
BLAST of EWM23570.1 vs. NCBI_GenBank
Match: gi|673039703|ref|XP_008873812.1| (40S ribosomal protein S13 [Aphanomyces invadans] >gi|574470593|gb|ETV97603.1| 40S ribosomal protein S13 [Aphanomyces invadans]) HSP 1 Score: 223.016 bits (567), Expect = 3.530e-72 Identity = 108/127 (85.04%), Postives = 118/127 (92.91%), Query Frame = 0 Query: 1 MGRMHSKGKGMASSAIPYKRTPPSWAKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKAVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLVR 127 MGRMHS GKGM+ SA PYKRTPPSW K TA+DVE+HVCK AKKGLTPS IGVILRDS+GIAQVK+VTGSK+LR+LKKN LAPE+PEDLYMLIKKAVAVRKHL+RNR+DKDSKFRLILIESRIHRL R Sbjct: 1 MGRMHSGGKGMSKSARPYKRTPPSWLKVTAEDVEDHVCKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKVLRILKKNGLAPELPEDLYMLIKKAVAVRKHLDRNRQDKDSKFRLILIESRIHRLAR 127
BLAST of EWM23570.1 vs. NCBI_GenBank
Match: gi|301090694|ref|XP_002895552.1| (40S ribosomal protein S13 [Phytophthora infestans T30-4] >gi|262097837|gb|EEY55889.1| 40S ribosomal protein S13 [Phytophthora infestans T30-4]) HSP 1 Score: 222.631 bits (566), Expect = 4.252e-72 Identity = 107/127 (84.25%), Postives = 118/127 (92.91%), Query Frame = 0 Query: 1 MGRMHSKGKGMASSAIPYKRTPPSWAKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKAVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLVR 127 MGRMHS GKGM+ SA PYKR+PPSW K +A+DVE+H+CK AKKGLTPS IGVILRDS+GIAQVK+VTGSK+LRLLKKN LAPE+PEDLYMLIKKAVAVRKHLERNR+DKDSKFRLILIESRIHRL R Sbjct: 1 MGRMHSHGKGMSKSARPYKRSPPSWLKVSAEDVEDHICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKVLRLLKKNGLAPELPEDLYMLIKKAVAVRKHLERNRQDKDSKFRLILIESRIHRLAR 127
BLAST of EWM23570.1 vs. NCBI_GenBank
Match: gi|675186733|ref|XP_008902251.1| (40S ribosomal protein S13 [Phytophthora parasitica INRA-310] >gi|566028975|gb|ETI51886.1| 40S ribosomal protein S13 [Phytophthora parasitica P1569] >gi|567966260|gb|ETK91712.1| 40S ribosomal protein S13 [Phytophthora parasitica] >gi|567994979|gb|ETL45125.1| 40S ribosomal protein S13 [Phytophthora parasitica] >gi|568024235|gb|ETL98275.1| 40S ribosomal protein S13 [Phytophthora parasitica] >gi|568054661|gb|ETM51440.1| 40S ribosomal protein S13 [Phytophthora parasitica] >gi|568097518|gb|ETN12260.1| 40S ribosomal protein S13 [Phytophthora parasitica INRA-310] >gi|570332691|gb|ETO80639.1| 40S ribosomal protein S13 [Phytophthora parasitica P1976] >gi|570956683|gb|ETP21668.1| 40S ribosomal protein S13 [Phytophthora parasitica CJ01A1] >gi|570991918|gb|ETP49561.1| 40S ribosomal protein S13 [Phytophthora parasitica P10297] >gi|970648194|gb|KUF87813.1| 40S ribosomal protein S13 [Phytophthora nicotianae] >gi|970661374|gb|KUF98850.1| hypothetical protein AM588_10011618 [Phytophthora nicotianae]) HSP 1 Score: 221.476 bits (563), Expect = 1.140e-71 Identity = 106/127 (83.46%), Postives = 118/127 (92.91%), Query Frame = 0 Query: 1 MGRMHSKGKGMASSAIPYKRTPPSWAKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKAVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLVR 127 MGRMHS GKGM+ SA PYKR+PPSW K +A+DVE+H+CK AKKGLTPS IGVILRDS+GIAQVK+VTGSK+LR+LKKN LAPE+PEDLYMLIKKAVAVRKHLERNR+DKDSKFRLILIESRIHRL R Sbjct: 1 MGRMHSHGKGMSKSARPYKRSPPSWLKVSAEDVEDHICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKVLRVLKKNGLAPELPEDLYMLIKKAVAVRKHLERNRQDKDSKFRLILIESRIHRLAR 127
BLAST of EWM23570.1 vs. NCBI_GenBank
Match: gi|953498766|emb|CEG39816.1| (40s ribosomal protein s13 [Plasmopara halstedii]) HSP 1 Score: 221.476 bits (563), Expect = 1.152e-71 Identity = 106/127 (83.46%), Postives = 118/127 (92.91%), Query Frame = 0 Query: 1 MGRMHSKGKGMASSAIPYKRTPPSWAKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKAVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLVR 127 MGRMHS GKGM+ SA PYKR+PPSW K +A+DVE+H+CK AKKGLTPS IGVILRDS+GIAQVK+VTGSK+LR+LKKN LAPE+PEDLYMLIKKAVAVRKHLERNR+DKDSKFRLILIESRIHRL R Sbjct: 1 MGRMHSHGKGMSKSARPYKRSPPSWLKVSAEDVEDHICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKVLRVLKKNGLAPELPEDLYMLIKKAVAVRKHLERNRQDKDSKFRLILIESRIHRLAR 127
BLAST of EWM23570.1 vs. NCBI_GenBank
Match: gi|698822977|ref|XP_009844517.1| (40S ribosomal protein S13 [Aphanomyces astaci] >gi|574100418|gb|ETV65998.1| 40S ribosomal protein S13 [Aphanomyces astaci]) HSP 1 Score: 221.09 bits (562), Expect = 1.806e-71 Identity = 107/127 (84.25%), Postives = 118/127 (92.91%), Query Frame = 0 Query: 1 MGRMHSKGKGMASSAIPYKRTPPSWAKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKAVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLVR 127 MGRMHS GKG++ SA PYKRTPPSW K TA+DVE+HVCK AKKGLTPS IGVILRDS+GIAQVK+VTGSK+LR+LKKN LAPE+PEDLYMLIKKAVAVRKHL+RNR+DKDSKFRLILIESRIHRL R Sbjct: 1 MGRMHSGGKGISKSARPYKRTPPSWLKVTAEDVEDHVCKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKVLRILKKNGLAPELPEDLYMLIKKAVAVRKHLDRNRQDKDSKFRLILIESRIHRLAR 127
BLAST of EWM23570.1 vs. NCBI_GenBank
Match: gi|672168012|ref|XP_008803987.1| (PREDICTED: 40S ribosomal protein S13 [Phoenix dactylifera]) HSP 1 Score: 219.935 bits (559), Expect = 5.522e-71 Identity = 105/127 (82.68%), Postives = 118/127 (92.91%), Query Frame = 0 Query: 1 MGRMHSKGKGMASSAIPYKRTPPSWAKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKAVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLVR 127 MGRMHS GKG++SSA+PYKRTPPSW K +A+DVEE++CK AKKGLTPS IGVILRDS+GIAQVK+VTGSKILR+LK + LAPEIPEDLY LIKKAVA+RKHLERNRKDKDSKFRLIL+ESRIHRL R Sbjct: 1 MGRMHSHGKGISSSALPYKRTPPSWLKISAQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHALAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLAR 127
BLAST of EWM23570.1 vs. NCBI_GenBank
Match: gi|1173943949|gb|OQR92743.1| (40S ribosomal protein S13 [Achlya hypogyna]) HSP 1 Score: 219.55 bits (558), Expect = 6.437e-71 Identity = 106/127 (83.46%), Postives = 117/127 (92.13%), Query Frame = 0 Query: 1 MGRMHSKGKGMASSAIPYKRTPPSWAKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKAVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLVR 127 MGRMHS GKGM+ SA PYKRTPPSW K TA+DVE+HVCK AKKGL+PS IGVILRDS+GIAQVK++TGSK+LR+LKKN LAP +PEDLYMLIKKAVAVRKHLERNR+DKDSKFRLILIESRIHRL R Sbjct: 1 MGRMHSAGKGMSKSARPYKRTPPSWLKVTAEDVEDHVCKFAKKGLSPSQIGVILRDSHGIAQVKSITGSKVLRILKKNGLAPGLPEDLYMLIKKAVAVRKHLERNRQDKDSKFRLILIESRIHRLAR 127
BLAST of EWM23570.1 vs. NCBI_GenBank
Match: gi|1179530989|ref|XP_020686590.1| (40S ribosomal protein S13 isoform X1 [Dendrobium catenatum]) HSP 1 Score: 218.779 bits (556), Expect = 1.707e-70 Identity = 104/127 (81.89%), Postives = 119/127 (93.70%), Query Frame = 0 Query: 1 MGRMHSKGKGMASSAIPYKRTPPSWAKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKAVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLVR 127 MGRMHS+GKG++SSA+PYKRTPPSW K +++DVEE++CK AKKGLTPS IGVILRDS+GIAQVK+VTGSKILR+LK + LAPEIPEDLY LIKKAVA+RKHLERNRKDKDSKFRLIL+ESRIHRL R Sbjct: 1 MGRMHSRGKGISSSALPYKRTPPSWLKTSSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLAR 127 The following BLAST results are available for this feature:
BLAST of EWM23570.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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