EWM23570.1, cds7104 (CDS) Nannochloropsis gaditana

Overview
NameEWM23570.1
Unique Namecds7104
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:495960..496145 +
Alignment locationCM002470.1:496268..496576 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23570.1
Product40s ribosomal protein s13
Orig transcript idgnl|cribi|Naga_100638g4.3215.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:495960..496145 +
CM002470.1supercontigCM002470.1:496268..496576 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005730nucleolus
GO:0005829cytosol
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR009068S15_NS1_RNA-bd
IPR000589Ribosomal_S15
IPR012606Ribosomal_S13/S15_N
Homology
BLAST of EWM23570.1 vs. NCBI_GenBank
Match: gi|585104702|gb|EWM23570.1| (40s ribosomal protein s13 [Nannochloropsis gaditana])

HSP 1 Score: 329.331 bits (843), Expect = 4.556e-114
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0
Query:    1 MGRMHSKGKGMASSAIPYKRTPPSWAKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKAVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLVRRVGDGGNEGGEGRRGGDREEGRDRAWGGRKEWRSKYT 164
            MGRMHSKGKGMASSAIPYKRTPPSWAKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKAVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLVRRVGDGGNEGGEGRRGGDREEGRDRAWGGRKEWRSKYT
Sbjct:    1 MGRMHSKGKGMASSAIPYKRTPPSWAKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKAVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLVRRVGDGGNEGGEGRRGGDREEGRDRAWGGRKEWRSKYT 164          
BLAST of EWM23570.1 vs. NCBI_GenBank
Match: gi|695436900|ref|XP_009532082.1| (hypothetical protein PHYSODRAFT_355091 [Phytophthora sojae] >gi|348671929|gb|EGZ11749.1| hypothetical protein PHYSODRAFT_355091 [Phytophthora sojae])

HSP 1 Score: 223.402 bits (568), Expect = 2.179e-72
Identity = 107/127 (84.25%), Postives = 119/127 (93.70%), Query Frame = 0
Query:    1 MGRMHSKGKGMASSAIPYKRTPPSWAKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKAVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLVR 127
            MGRMHS+GKGM+ SA PYKR+PPSW K +A+DVE+H+CK AKKGLTPS IGVILRDS+GIAQVK+VTGSK+LRLLKKN LAPE+PEDLYMLIKKAVAVRKHLERNR+DKDSKFRLILIESRIHRL R
Sbjct:    1 MGRMHSRGKGMSKSARPYKRSPPSWLKVSAEDVEDHICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKVLRLLKKNGLAPELPEDLYMLIKKAVAVRKHLERNRQDKDSKFRLILIESRIHRLAR 127          
BLAST of EWM23570.1 vs. NCBI_GenBank
Match: gi|673039703|ref|XP_008873812.1| (40S ribosomal protein S13 [Aphanomyces invadans] >gi|574470593|gb|ETV97603.1| 40S ribosomal protein S13 [Aphanomyces invadans])

HSP 1 Score: 223.016 bits (567), Expect = 3.530e-72
Identity = 108/127 (85.04%), Postives = 118/127 (92.91%), Query Frame = 0
Query:    1 MGRMHSKGKGMASSAIPYKRTPPSWAKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKAVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLVR 127
            MGRMHS GKGM+ SA PYKRTPPSW K TA+DVE+HVCK AKKGLTPS IGVILRDS+GIAQVK+VTGSK+LR+LKKN LAPE+PEDLYMLIKKAVAVRKHL+RNR+DKDSKFRLILIESRIHRL R
Sbjct:    1 MGRMHSGGKGMSKSARPYKRTPPSWLKVTAEDVEDHVCKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKVLRILKKNGLAPELPEDLYMLIKKAVAVRKHLDRNRQDKDSKFRLILIESRIHRLAR 127          
BLAST of EWM23570.1 vs. NCBI_GenBank
Match: gi|301090694|ref|XP_002895552.1| (40S ribosomal protein S13 [Phytophthora infestans T30-4] >gi|262097837|gb|EEY55889.1| 40S ribosomal protein S13 [Phytophthora infestans T30-4])

HSP 1 Score: 222.631 bits (566), Expect = 4.252e-72
Identity = 107/127 (84.25%), Postives = 118/127 (92.91%), Query Frame = 0
Query:    1 MGRMHSKGKGMASSAIPYKRTPPSWAKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKAVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLVR 127
            MGRMHS GKGM+ SA PYKR+PPSW K +A+DVE+H+CK AKKGLTPS IGVILRDS+GIAQVK+VTGSK+LRLLKKN LAPE+PEDLYMLIKKAVAVRKHLERNR+DKDSKFRLILIESRIHRL R
Sbjct:    1 MGRMHSHGKGMSKSARPYKRSPPSWLKVSAEDVEDHICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKVLRLLKKNGLAPELPEDLYMLIKKAVAVRKHLERNRQDKDSKFRLILIESRIHRLAR 127          
BLAST of EWM23570.1 vs. NCBI_GenBank
Match: gi|675186733|ref|XP_008902251.1| (40S ribosomal protein S13 [Phytophthora parasitica INRA-310] >gi|566028975|gb|ETI51886.1| 40S ribosomal protein S13 [Phytophthora parasitica P1569] >gi|567966260|gb|ETK91712.1| 40S ribosomal protein S13 [Phytophthora parasitica] >gi|567994979|gb|ETL45125.1| 40S ribosomal protein S13 [Phytophthora parasitica] >gi|568024235|gb|ETL98275.1| 40S ribosomal protein S13 [Phytophthora parasitica] >gi|568054661|gb|ETM51440.1| 40S ribosomal protein S13 [Phytophthora parasitica] >gi|568097518|gb|ETN12260.1| 40S ribosomal protein S13 [Phytophthora parasitica INRA-310] >gi|570332691|gb|ETO80639.1| 40S ribosomal protein S13 [Phytophthora parasitica P1976] >gi|570956683|gb|ETP21668.1| 40S ribosomal protein S13 [Phytophthora parasitica CJ01A1] >gi|570991918|gb|ETP49561.1| 40S ribosomal protein S13 [Phytophthora parasitica P10297] >gi|970648194|gb|KUF87813.1| 40S ribosomal protein S13 [Phytophthora nicotianae] >gi|970661374|gb|KUF98850.1| hypothetical protein AM588_10011618 [Phytophthora nicotianae])

HSP 1 Score: 221.476 bits (563), Expect = 1.140e-71
Identity = 106/127 (83.46%), Postives = 118/127 (92.91%), Query Frame = 0
Query:    1 MGRMHSKGKGMASSAIPYKRTPPSWAKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKAVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLVR 127
            MGRMHS GKGM+ SA PYKR+PPSW K +A+DVE+H+CK AKKGLTPS IGVILRDS+GIAQVK+VTGSK+LR+LKKN LAPE+PEDLYMLIKKAVAVRKHLERNR+DKDSKFRLILIESRIHRL R
Sbjct:    1 MGRMHSHGKGMSKSARPYKRSPPSWLKVSAEDVEDHICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKVLRVLKKNGLAPELPEDLYMLIKKAVAVRKHLERNRQDKDSKFRLILIESRIHRLAR 127          
BLAST of EWM23570.1 vs. NCBI_GenBank
Match: gi|953498766|emb|CEG39816.1| (40s ribosomal protein s13 [Plasmopara halstedii])

HSP 1 Score: 221.476 bits (563), Expect = 1.152e-71
Identity = 106/127 (83.46%), Postives = 118/127 (92.91%), Query Frame = 0
Query:    1 MGRMHSKGKGMASSAIPYKRTPPSWAKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKAVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLVR 127
            MGRMHS GKGM+ SA PYKR+PPSW K +A+DVE+H+CK AKKGLTPS IGVILRDS+GIAQVK+VTGSK+LR+LKKN LAPE+PEDLYMLIKKAVAVRKHLERNR+DKDSKFRLILIESRIHRL R
Sbjct:    1 MGRMHSHGKGMSKSARPYKRSPPSWLKVSAEDVEDHICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKVLRVLKKNGLAPELPEDLYMLIKKAVAVRKHLERNRQDKDSKFRLILIESRIHRLAR 127          
BLAST of EWM23570.1 vs. NCBI_GenBank
Match: gi|698822977|ref|XP_009844517.1| (40S ribosomal protein S13 [Aphanomyces astaci] >gi|574100418|gb|ETV65998.1| 40S ribosomal protein S13 [Aphanomyces astaci])

HSP 1 Score: 221.09 bits (562), Expect = 1.806e-71
Identity = 107/127 (84.25%), Postives = 118/127 (92.91%), Query Frame = 0
Query:    1 MGRMHSKGKGMASSAIPYKRTPPSWAKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKAVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLVR 127
            MGRMHS GKG++ SA PYKRTPPSW K TA+DVE+HVCK AKKGLTPS IGVILRDS+GIAQVK+VTGSK+LR+LKKN LAPE+PEDLYMLIKKAVAVRKHL+RNR+DKDSKFRLILIESRIHRL R
Sbjct:    1 MGRMHSGGKGISKSARPYKRTPPSWLKVTAEDVEDHVCKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKVLRILKKNGLAPELPEDLYMLIKKAVAVRKHLDRNRQDKDSKFRLILIESRIHRLAR 127          
BLAST of EWM23570.1 vs. NCBI_GenBank
Match: gi|672168012|ref|XP_008803987.1| (PREDICTED: 40S ribosomal protein S13 [Phoenix dactylifera])

HSP 1 Score: 219.935 bits (559), Expect = 5.522e-71
Identity = 105/127 (82.68%), Postives = 118/127 (92.91%), Query Frame = 0
Query:    1 MGRMHSKGKGMASSAIPYKRTPPSWAKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKAVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLVR 127
            MGRMHS GKG++SSA+PYKRTPPSW K +A+DVEE++CK AKKGLTPS IGVILRDS+GIAQVK+VTGSKILR+LK + LAPEIPEDLY LIKKAVA+RKHLERNRKDKDSKFRLIL+ESRIHRL R
Sbjct:    1 MGRMHSHGKGISSSALPYKRTPPSWLKISAQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHALAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLAR 127          
BLAST of EWM23570.1 vs. NCBI_GenBank
Match: gi|1173943949|gb|OQR92743.1| (40S ribosomal protein S13 [Achlya hypogyna])

HSP 1 Score: 219.55 bits (558), Expect = 6.437e-71
Identity = 106/127 (83.46%), Postives = 117/127 (92.13%), Query Frame = 0
Query:    1 MGRMHSKGKGMASSAIPYKRTPPSWAKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKAVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLVR 127
            MGRMHS GKGM+ SA PYKRTPPSW K TA+DVE+HVCK AKKGL+PS IGVILRDS+GIAQVK++TGSK+LR+LKKN LAP +PEDLYMLIKKAVAVRKHLERNR+DKDSKFRLILIESRIHRL R
Sbjct:    1 MGRMHSAGKGMSKSARPYKRTPPSWLKVTAEDVEDHVCKFAKKGLSPSQIGVILRDSHGIAQVKSITGSKVLRILKKNGLAPGLPEDLYMLIKKAVAVRKHLERNRQDKDSKFRLILIESRIHRLAR 127          
BLAST of EWM23570.1 vs. NCBI_GenBank
Match: gi|1179530989|ref|XP_020686590.1| (40S ribosomal protein S13 isoform X1 [Dendrobium catenatum])

HSP 1 Score: 218.779 bits (556), Expect = 1.707e-70
Identity = 104/127 (81.89%), Postives = 119/127 (93.70%), Query Frame = 0
Query:    1 MGRMHSKGKGMASSAIPYKRTPPSWAKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKAVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLVR 127
            MGRMHS+GKG++SSA+PYKRTPPSW K +++DVEE++CK AKKGLTPS IGVILRDS+GIAQVK+VTGSKILR+LK + LAPEIPEDLY LIKKAVA+RKHLERNRKDKDSKFRLIL+ESRIHRL R
Sbjct:    1 MGRMHSRGKGISSSALPYKRTPPSWLKTSSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLAR 127          
The following BLAST results are available for this feature:
BLAST of EWM23570.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104702|gb|EWM23570.1|4.556e-114100.0040s ribosomal protein s13 [Nannochloropsis gaditan... [more]
gi|695436900|ref|XP_009532082.1|2.179e-7284.25hypothetical protein PHYSODRAFT_355091 [Phytophtho... [more]
gi|673039703|ref|XP_008873812.1|3.530e-7285.0440S ribosomal protein S13 [Aphanomyces invadans] >... [more]
gi|301090694|ref|XP_002895552.1|4.252e-7284.2540S ribosomal protein S13 [Phytophthora infestans ... [more]
gi|675186733|ref|XP_008902251.1|1.140e-7183.4640S ribosomal protein S13 [Phytophthora parasitica... [more]
gi|953498766|emb|CEG39816.1|1.152e-7183.4640s ribosomal protein s13 [Plasmopara halstedii][more]
gi|698822977|ref|XP_009844517.1|1.806e-7184.2540S ribosomal protein S13 [Aphanomyces astaci] >gi... [more]
gi|672168012|ref|XP_008803987.1|5.522e-7182.68PREDICTED: 40S ribosomal protein S13 [Phoenix dact... [more]
gi|1173943949|gb|OQR92743.1|6.437e-7183.4640S ribosomal protein S13 [Achlya hypogyna][more]
gi|1179530989|ref|XP_020686590.1|1.707e-7081.8940S ribosomal protein S13 isoform X1 [Dendrobium c... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7121rna7121Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications