rna7120, rna7120 (mRNA) Nannochloropsis gaditana

Overview
Namerna7120
Unique Namerna7120
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length908
Alignment locationCM002470.1:493909..495051 -

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Properties
Property NameValue
Product60s ribosomal protein l21-a
Orig transcript idgnl|cribi|Naga_100638g3.3216.mrna
Orig protein idgnl|cribi|Naga_100638g3.3216
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:493909..495051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100638g3gene6885Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7120rna7120-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23571.1cds7103Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7120 ID=rna7120|Name=rna7120|organism=Nannochloropsis gaditana|type=mRNA|length=908bp
TACATGGCATTGCGTTGTAAGACCATCCTGCTGGCAGCAGCAATGCGTGT
AAGCCGCATTGTCGACCCTTGTGGTGCAAGCCTTGCTCGGTTAACCTCCT
CTCGGACCTTTCAAGCTAGCACTCCGACACCAGACCCTTACACCCACCCT
GGTGAAGACGACCACCAAGATGACGATCATAGGCAGTGTCGACTGACAGG
GGATGAGGTGGAAGATACCTCTGATCCAGTAGTTCGCGCGGGCCACCGCG
TAACAAGTGCTGTGAATAAAGCCTCCCGTACAGTGAGAGGAGTGCTGGAT
GCCAGCGAGGATCCGATCAGGGCCGCGGGTGAAGAAGCCCATCACAGCGT
ACCTAGGTTCAAAGATACGATCGGCATGGAAGCAGAAAGGGCGAGAGAAG
AACTCAAAGGGCACGTGTGGCCTGAGGGAAAAGGGGGCTTGAAGATAGAG
GTACCGAGGAAGGAAAGGGAGGAATTCGCAAACGGGAAAGAGGGAGGAGT
AATTACACACGTGGCAGAGACGGCGACGGAGGCCTTGCACGGAAAAATGA
AAGACGCGAAGCAGAAATGGAAAGATACAGCAGCAAAACTGGCAAAAGAA
GGGGCGAGAATCGAGGATGAGATGCAGCTGGCTGTGGAGGCCGAGCGGAA
ACGAGGAAAACGACGGGAATGAGTGGCCCGGAAGCCCATCATTCCCGAGA
AGACGCGTGGAGCTCGGACGGGGTATGAGGGTCCGAAAAGTCAGGCATGG
AGGGAGGCAGATGGGGAGGTGCGCATAGAGAATGGTACGATGGGAGGGGC
CCCCGAGAGAAAGGTGTGTGCTGGCTAGGGCCACGACGAAGAGCGAGTGC
ACGATACAACGAAGGTCGAGGGATCAATCGCATTTCGAAGAACAAGCAAT
GCCACAGG
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protein sequence of rna7120

>rna7120-protein ID=rna7120-protein|Name=rna7120|organism=Nannochloropsis gaditana|type=polypeptide|length=160bp
MPHSYGYRARTRSMFRRDFGEHGVNPLSIYMRNYKVGDVVDIKANPSIQK
GMPFKGYHGRTGVVYNVTKRALGVEVNKLVNGKIIKKKINVRVEHLRPST
SRKEWIERVRQNELQKKAVKAGEKEYRELKRLPKAPKEAFTFKYDGEVQT
VQAIPFVDLV
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mRNA from alignment at CM002470.1:493909..495051-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7120 ID=rna7120|Name=rna7120|organism=Nannochloropsis gaditana|type=mRNA|length=1143bp|location=Sequence derived from alignment at CM002470.1:493909..495051- (Nannochloropsis gaditana)
AGGTCATGAAGACAGTACGGATGGCTGTTGATGCGTAATGTTTCTGTACA
TAGCTCCCGTTTCTAGTCTACCCTGGTCCGAAGAAAGCCCCTGCACATAT
GCACCCGTACAAACATGAAATCCGTGCTCGCACACCGCCACAACCTTGTT
GCTCATGTTTTTACACATATGATCGACCGCACTGACAAATTCACAGAGAA
ATGCCGCACTCCTATGGGTATCGAGCGCGGACGCGCTCTATGTTTCGTCG
GGACTTCGGGGAGCATGGTGTAAACCCCTTGTCCATCTACATGCGCAACT
ATAAGGTATGTTTATGCCTACGTCCAGGAGTTGGTGTGTTGCGGTTGCGG
TCCTTCTGTATTGATACGGATGTGGGTAGTTGTGGACACGCAAGGGAATA
AGGCTTGCGATAGGCTTGCCTGCTCCTGCCTTTCTCATGGCCTTCCCTCC
ATCTTCTCCTCGAATGCCCTGCGCGCAGGTGGGCGATGTGGTGGATATCA
AAGCCAACCCTTCCATTCAAAAGGGCATGCCGTTCAAGGGCTACCACGGT
CGCACGGGTGTGGTCTACAACGTGACGAAACGGGCCTTAGGCGTGGAGGT
GAACAAATTGGTGAACGGGAAGATCATCAAGAAGAAGATCAACGTCCGCG
TCGAGCACCTTCGCCCATCCACTTCCCGAAAAGAGTGGATCGAGCGGGTC
CGACAAAACGAGCTCCAGAAGAAGGCGGTCAAAGCGGGGGAGAAGGAGTA
CCGAGAGTTAAAAAGGTTGCCCAAGGCTCCCAAGGAGGCGTTTACGTTCA
AGTACGACGGAGAGGTGCAGACCGTACAGGCGATCCCCTTCGTGGACCTG
GTCTAAAAAGGTGAAGAGACGGAGAGGATGGAGGGAGGAAGGCGGGGGAG
ATAGGTGGGGGGTTGAAGATGGGCGTCACGGAGCCAGCGACGGAGGTAGG
TTGACACATTTGTGCCTCGGGATGGGCTTCTATAAATCTCCTTGAGTACT
ACTTCGCATAGACATGGAGAAGAGACAGAGTCAAGGGAGGAAAGCGAAAT
CAGGGGGCACATGTGTGAGGATCTGCTGCAGGGTGGGGCTCGGTGGGCCA
TGCGGACACCTGGGAAAAAGAAGGGACGGAAGGATAGAAGTGC
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Coding sequence (CDS) from alignment at CM002470.1:493909..495051-

>rna7120 ID=rna7120|Name=rna7120|organism=Nannochloropsis gaditana|type=CDS|length=966bp|location=Sequence derived from alignment at CM002470.1:493909..495051- (Nannochloropsis gaditana)
GTGGGCGATGTGGTGGATATCAAAGCCAACCCTTCCATTCAAAAGGGCAT
GCCGTTCAAGGGCTACCACGGTCGCACGGGTGTGGTCTACAACGTGACGA
AACGGGCCTTAGGCGTGGAGGTGAACAAATTGGTGAACGGGAAGATCATC
AAGAAGAAGATCAACGTCCGCGTCGAGCACCTTCGCCCATCCACTTCCCG
AAAAGAGTGGATCGAGCGGGTCCGACAAAACGAGCTCCAGAAGAAGGCGG
TCAAAGCGGGGGAGAAGGAGTACCGAGAGTTAAAAAGGTTGCCCAAGGCT
CCCAAGGAGGCGTTTACGTTCAAGTACGACGGAGAGGTGCAGACCGTACA
GGCGATCCCCTTCGTGGACCTGGTCTAAATGCCGCACTCCTATGGGTATC
GAGCGCGGACGCGCTCTATGTTTCGTCGGGACTTCGGGGAGCATGGTGTA
AACCCCTTGTCCATCTACATGCGCAACTATAAGGTGGGCGATGTGGTGGA
TATCAAAGCCAACCCTTCCATTCAAAAGGGCATGCCGTTCAAGGGCTACC
ACGGTCGCACGGGTGTGGTCTACAACGTGACGAAACGGGCCTTAGGCGTG
GAGGTGAACAAATTGGTGAACGGGAAGATCATCAAGAAGAAGATCAACGT
CCGCGTCGAGCACCTTCGCCCATCCACTTCCCGAAAAGAGTGGATCGAGC
GGGTCCGACAAAACGAGCTCCAGAAGAAGGCGGTCAAAGCGGGGGAGAAG
GAGTACCGAGAGTTAAAAAGGTTGCCCAAGGCTCCCAAGGAGGCGTTTAC
GTTCAAGTACGACGGAGAGGTGCAGACCGTACAGGCGATCCCCTTCGTGG
ACCTGGTCTAAATGCCGCACTCCTATGGGTATCGAGCGCGGACGCGCTCT
ATGTTTCGTCGGGACTTCGGGGAGCATGGTGTAAACCCCTTGTCCATCTA
CATGCGCAACTATAAG
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Synonyms
Publications