EWM23571.1, cds7103 (CDS) Nannochloropsis gaditana

Overview
NameEWM23571.1
Unique Namecds7103
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:494747..494851 -
Alignment locationCM002470.1:494196..494573 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23571.1
Product60s ribosomal protein l21-a
Orig transcript idgnl|cribi|Naga_100638g3.3216.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:494747..494851 -
CM002470.1supercontigCM002470.1:494196..494573 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR008991Translation_prot_SH3-like
IPR018259Ribosomal_L21e_CS
IPR001147Ribosomal_L21e
Homology
BLAST of EWM23571.1 vs. NCBI_GenBank
Match: gi|585104703|gb|EWM23571.1| (60s ribosomal protein l21-a [Nannochloropsis gaditana])

HSP 1 Score: 327.791 bits (839), Expect = 1.188e-113
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0
Query:    1 MPHSYGYRARTRSMFRRDFGEHGVNPLSIYMRNYKVGDVVDIKANPSIQKGMPFKGYHGRTGVVYNVTKRALGVEVNKLVNGKIIKKKINVRVEHLRPSTSRKEWIERVRQNELQKKAVKAGEKEYRELKRLPKAPKEAFTFKYDGEVQTVQAIPFVDLV 160
            MPHSYGYRARTRSMFRRDFGEHGVNPLSIYMRNYKVGDVVDIKANPSIQKGMPFKGYHGRTGVVYNVTKRALGVEVNKLVNGKIIKKKINVRVEHLRPSTSRKEWIERVRQNELQKKAVKAGEKEYRELKRLPKAPKEAFTFKYDGEVQTVQAIPFVDLV
Sbjct:    1 MPHSYGYRARTRSMFRRDFGEHGVNPLSIYMRNYKVGDVVDIKANPSIQKGMPFKGYHGRTGVVYNVTKRALGVEVNKLVNGKIIKKKINVRVEHLRPSTSRKEWIERVRQNELQKKAVKAGEKEYRELKRLPKAPKEAFTFKYDGEVQTVQAIPFVDLV 160          
BLAST of EWM23571.1 vs. NCBI_GenBank
Match: gi|224005290|ref|XP_002296296.1| (RL21, ribosomal protein 21, 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335] >gi|209586328|gb|ACI65013.1| RL21, ribosomal protein 21, 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 178.718 bits (452), Expect = 1.063e-54
Identity = 95/164 (57.93%), Postives = 118/164 (71.95%), Query Frame = 0
Query:    1 MPHSYGYRARTRSMFRRDFGEHGVNPLSIYMRNYKVGDVVDIKANPSIQKGMPFKGYHGRTGVVYNVTKRALGVEVNKLVNGKIIKKKINVRVEHLRPSTSRKEWIERVRQNELQK-KAVKAGEKEYRELKRLPKAPKEAFTFKY---DGEVQTVQAIPFVDLV 160
            MPHS+G RARTR MF + F +HG   LS Y  + KVGD VDI ANPSI KGMP K YHGRTG+V+NVTK ++GV VNKLVNG+I++K+I+VR+EH+R S  +KE I RV+ NEL K +A K G K   +LKR PK PKE +       DGE+ T+Q +PF DLV
Sbjct:    1 MPHSFGVRARTRHMFAKKFRDHGPLHLSQYFLSVKVGDYVDIFANPSIHKGMPHKHYHGRTGIVFNVTKSSVGVRVNKLVNGRILEKRIHVRIEHIRKSKCQKEIIARVKSNELAKAEARKTGVKV--DLKRHPKQPKEGYFLAAPGGDGEITTIQPLPFSDLV 162          
BLAST of EWM23571.1 vs. NCBI_GenBank
Match: gi|676393549|ref|XP_009040052.1| (hypothetical protein AURANDRAFT_66559 [Aureococcus anophagefferens] >gi|323449261|gb|EGB05150.1| hypothetical protein AURANDRAFT_66559 [Aureococcus anophagefferens])

HSP 1 Score: 176.022 bits (445), Expect = 1.059e-53
Identity = 89/160 (55.62%), Postives = 111/160 (69.38%), Query Frame = 0
Query:    1 MPHSYGYRARTRSMFRRDFGEHGVNPLSIYMRNYKVGDVVDIKANPSIQKGMPFKGYHGRTGVVYNVTKRALGVEVNKLVNGKIIKKKINVRVEHLRPSTSRKEWIERVRQNE-LQKKAVKAGEKEYRELKRLPKAPKEAFTFKYDGEVQTVQAIPFVDL 159
            MPHS+GYRARTR MF R F + G+  +S Y+  YK+GD VDIK NP+  KGMPFK +HGRTGV+YNVTKRA+GV + K VNG+II K +NVRVEH+ PS  + + I RV +NE L+K+A ++G K    LKR P  PK  F      E  T+Q IPF DL
Sbjct:    1 MPHSFGYRARTRDMFSRPFRQRGMIKMSTYLTTYKMGDYVDIKCNPAQVKGMPFKHFHGRTGVIYNVTKRAVGVRIAKQVNGRIINKHLNVRVEHVTPSKCQNDLIARVARNEKLKKEAKQSGTKV--TLKRQPTQPKAGFVITASEEPTTIQPIPFSDL 158          
BLAST of EWM23571.1 vs. NCBI_GenBank
Match: gi|676392517|ref|XP_009039536.1| (hypothetical protein AURANDRAFT_38325 [Aureococcus anophagefferens] >gi|323449812|gb|EGB05697.1| hypothetical protein AURANDRAFT_38325 [Aureococcus anophagefferens])

HSP 1 Score: 176.022 bits (445), Expect = 1.144e-53
Identity = 89/160 (55.62%), Postives = 111/160 (69.38%), Query Frame = 0
Query:    1 MPHSYGYRARTRSMFRRDFGEHGVNPLSIYMRNYKVGDVVDIKANPSIQKGMPFKGYHGRTGVVYNVTKRALGVEVNKLVNGKIIKKKINVRVEHLRPSTSRKEWIERVRQNE-LQKKAVKAGEKEYRELKRLPKAPKEAFTFKYDGEVQTVQAIPFVDL 159
            MPHS+GYRARTR MF R F + G+  +S Y+  YK+GD VDIK NP+  KGMPFK +HGRTGV+YNVTKRA+GV + K VNG+II K +NVRVEH+ PS  + + I RV +NE L+K+A ++G K    LKR P  PK  F      E  T+Q IPF DL
Sbjct:    1 MPHSFGYRARTRDMFSRPFRQRGMIKMSTYLTTYKMGDYVDIKCNPAQVKGMPFKHFHGRTGVIYNVTKRAVGVRIAKQVNGRIINKHLNVRVEHVTPSKCQNDLIARVARNEKLKKEAKQSGTKV--ALKRQPTQPKAGFVITASEEPTTIQPIPFSDL 158          
BLAST of EWM23571.1 vs. NCBI_GenBank
Match: gi|675188963|ref|XP_008903366.1| (hypothetical protein PPTG_10422 [Phytophthora parasitica INRA-310] >gi|566027796|gb|ETI50707.1| hypothetical protein F443_05836 [Phytophthora parasitica P1569] >gi|567965055|gb|ETK90528.1| hypothetical protein L915_05703 [Phytophthora parasitica] >gi|568023074|gb|ETL97138.1| hypothetical protein L917_05526 [Phytophthora parasitica] >gi|568053466|gb|ETM50294.1| hypothetical protein L914_05643 [Phytophthora parasitica] >gi|568096837|gb|ETN11584.1| hypothetical protein PPTG_10422 [Phytophthora parasitica INRA-310] >gi|570331436|gb|ETO79384.1| hypothetical protein F444_05884 [Phytophthora parasitica P1976] >gi|570990417|gb|ETP48373.1| hypothetical protein F442_05879 [Phytophthora parasitica P10297] >gi|970631427|gb|KUF78036.1| 60S ribosomal protein L21-1 [Phytophthora nicotianae] >gi|970660763|gb|KUF98288.1| Dicarboxylate/Amino Acid:Cation (Na or H) Symporter (DAACS) family [Phytophthora nicotianae])

HSP 1 Score: 175.252 bits (443), Expect = 2.429e-53
Identity = 91/161 (56.52%), Postives = 115/161 (71.43%), Query Frame = 0
Query:    1 MPHSYGYRARTRSMFRRDFGEHGVNPLSIYMRNYKVGDVVDIKANPSIQKGMPFKGYHGRTGVVYNVTKRALGVEVNKLVNGKIIKKKINVRVEHLRPSTSRKEWIERVRQNELQKKAVKAGEKEYRELKRLPKAPKEAFTFKYDGEVQ-TVQAIPFVDLV 160
            MPHS+GYRARTR MF R F + G+  +S Y+R +KVGD VDIKAN ++QKGMP K YHGRTG VYNVTKRA+GV VNK+V  +II K INVR+EH+  S  R  ++ RV++NEL+KK  +A      ++KR P  PKEA+T K  G    T+ A PFVDL+
Sbjct:    1 MPHSFGYRARTRDMFARPFRQSGMIKMSTYLRTFKVGDYVDIKANGAVQKGMPHKFYHGRTGRVYNVTKRAVGVRVNKIVGNRIIHKHINVRIEHVHQSKCRLGFLTRVKENELKKKEARATGVRA-QIKRTPVQPKEAYTLKTKGTKPITMAAQPFVDLM 160          
BLAST of EWM23571.1 vs. NCBI_GenBank
Match: gi|1183477265|gb|ORZ01215.1| (60S ribosomal protein L21-A [Syncephalastrum racemosum])

HSP 1 Score: 174.481 bits (441), Expect = 5.953e-53
Identity = 92/162 (56.79%), Postives = 115/162 (70.99%), Query Frame = 0
Query:    1 MPHSYGYRARTRSMFRRDFGEHGVNPLSIYMRNYKVGDVVDIKANPSIQKGMPFKGYHGRTGVVYNVTKRALGVEVNKLVNGKIIKKKINVRVEHLRPSTSRKEWIERVRQNELQKKAVKA-GEKEYRELKRLPKAPKEA-FTFKYDGEVQTVQAIPFVDLV 160
            MPHS+G RARTR MF R F EHG   LS Y+  YKVGD+VDIKAN SIQ GMP K YHGRTGVVYNVTK A+GV +NK V  + I+K++NVR+EH++ S  R+E+++RV+ N  +KK  KA GEK    LKR+P  P+EA F    D   QT+Q IP+  L+
Sbjct:    1 MPHSFGLRARTRHMFSRKFREHGPTHLSTYLTTYKVGDIVDIKANASIQAGMPHKFYHGRTGVVYNVTKTAVGVLINKRVGNRYIEKRVNVRIEHVKHSKCRQEFLDRVKANAEKKKQAKASGEKV--NLKRIPVQPREARFVSTEDNVPQTIQPIPYETLL 160          
BLAST of EWM23571.1 vs. NCBI_GenBank
Match: gi|567993768|gb|ETL43938.1| (hypothetical protein L916_05640 [Phytophthora parasitica] >gi|570955296|gb|ETP20482.1| hypothetical protein F441_05841 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 174.096 bits (440), Expect = 7.654e-53
Identity = 90/161 (55.90%), Postives = 116/161 (72.05%), Query Frame = 0
Query:    1 MPHSYGYRARTRSMFRRDFGEHGVNPLSIYMRNYKVGDVVDIKANPSIQKGMPFKGYHGRTGVVYNVTKRALGVEVNKLVNGKIIKKKINVRVEHLRPSTSRKEWIERVRQNELQKKAVKAGEKEYRELKRLPKAPKEAFTFKYDG-EVQTVQAIPFVDLV 160
            MPHS+GYRARTR MF R F + G+  +S Y+R +KVGD VDIKAN ++QKGMP K YHGRTG VYNVTKRA+GV VNK+V  +II K INVR+EH+  S  R  ++ RV++NEL+KK  +A      ++KR P  PK+A+T K  G +  T+ A PFVDL+
Sbjct:    1 MPHSFGYRARTRDMFARPFRQSGMIKMSTYLRTFKVGDYVDIKANGAVQKGMPHKFYHGRTGRVYNVTKRAVGVRVNKIVGNRIIHKHINVRIEHVHQSKCRLGFLTRVKENELKKKEARATGVRA-QIKRTPVQPKDAYTLKTKGTKPITMAAQPFVDLM 160          
BLAST of EWM23571.1 vs. NCBI_GenBank
Match: gi|301123509|ref|XP_002909481.1| (60S ribosomal protein L21-1 [Phytophthora infestans T30-4] >gi|262100243|gb|EEY58295.1| 60S ribosomal protein L21-1 [Phytophthora infestans T30-4])

HSP 1 Score: 173.326 bits (438), Expect = 1.238e-52
Identity = 90/161 (55.90%), Postives = 115/161 (71.43%), Query Frame = 0
Query:    1 MPHSYGYRARTRSMFRRDFGEHGVNPLSIYMRNYKVGDVVDIKANPSIQKGMPFKGYHGRTGVVYNVTKRALGVEVNKLVNGKIIKKKINVRVEHLRPSTSRKEWIERVRQNELQKKAVKAGEKEYRELKRLPKAPKEAFTFKYDG-EVQTVQAIPFVDLV 160
            MPHS+GYRARTR MF R F + G+  +S Y+R +KVGD VDIKAN ++QKGMP K YHGRTG VYNVTKRA+GV VNK+V  +II K INVR+EH+  S  R  ++ RV++NEL+KK  +A      ++KR P  PK A+T K  G +  T+ A PFVDL+
Sbjct:    1 MPHSFGYRARTRDMFARPFRQSGMIKMSTYLRTFKVGDYVDIKANGAVQKGMPHKFYHGRTGRVYNVTKRAVGVRVNKIVGNRIIHKHINVRIEHVHQSKCRLGFLTRVKENELKKKEARATGVRA-QIKRTPGQPKAAYTLKAKGTKPITMAAQPFVDLM 160          
BLAST of EWM23571.1 vs. NCBI_GenBank
Match: gi|695369778|ref|XP_009514141.1| (hypothetical protein PHYSODRAFT_320742 [Phytophthora sojae] >gi|348687052|gb|EGZ26866.1| hypothetical protein PHYSODRAFT_320742 [Phytophthora sojae])

HSP 1 Score: 172.94 bits (437), Expect = 2.210e-52
Identity = 91/162 (56.17%), Postives = 116/162 (71.60%), Query Frame = 0
Query:    1 MPHSYGYRARTRSMFRRDFGEHGVNPLSIYMRNYKVGDVVDIKANPSIQKGMPFKGYHGRTGVVYNVTKRALGVEVNKLVNGKIIKKKINVRVEHLRPSTSRKEWIERVRQNELQKKAVKA-GEKEYRELKRLPKAPKEAFTFKYDG-EVQTVQAIPFVDLV 160
            MPHS+GYRARTR MF R F + G+  +S Y+R +KVGD VDIKAN ++QKGMP K YHGRTG VYNVTKRA+GV VNK+V  +II K INVR+EH+  S  R  ++ RV++NEL+KK   A G +   ++KR P  PK A+T K  G +  T+ A PFVDL+
Sbjct:    1 MPHSFGYRARTRDMFARPFRQSGMIKMSTYLRTFKVGDYVDIKANGAVQKGMPHKFYHGRTGRVYNVTKRAVGVRVNKIVGNRIIHKHINVRIEHVHQSKCRLGFLTRVKENELKKKEAHATGVRA--QIKRTPVQPKAAYTLKAKGTQPITMAAQPFVDLM 160          
BLAST of EWM23571.1 vs. NCBI_GenBank
Match: gi|1214708594|gb|OWZ19860.1| (60S ribosomal protein L21-1 [Phytophthora megakarya])

HSP 1 Score: 172.94 bits (437), Expect = 2.438e-52
Identity = 90/161 (55.90%), Postives = 115/161 (71.43%), Query Frame = 0
Query:    1 MPHSYGYRARTRSMFRRDFGEHGVNPLSIYMRNYKVGDVVDIKANPSIQKGMPFKGYHGRTGVVYNVTKRALGVEVNKLVNGKIIKKKINVRVEHLRPSTSRKEWIERVRQNELQKKAVKAGEKEYRELKRLPKAPKEAFTFKYDG-EVQTVQAIPFVDLV 160
            MPHS+GYRARTR MF R F + G+  +S Y+R +KVGD VDIKAN ++QKGMP K YHGRTG VYNVTKRA+GV VNK+V  +II K INVR+EH+  S  R  ++ RV++NEL+KK  +A      ++KR P  PK A+T K  G +  T+ A PFVDL+
Sbjct:    1 MPHSFGYRARTRDMFARPFRQSGMIKMSTYLRTFKVGDYVDIKANGAVQKGMPHKFYHGRTGRVYNVTKRAVGVRVNKVVGNRIIHKHINVRIEHVHQSKCRLGFLTRVKENELKKKEARATGVRA-QIKRTPVQPKAAYTLKTKGTKPITMAAQPFVDLM 160          
The following BLAST results are available for this feature:
BLAST of EWM23571.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104703|gb|EWM23571.1|1.188e-113100.0060s ribosomal protein l21-a [Nannochloropsis gadit... [more]
gi|224005290|ref|XP_002296296.1|1.063e-5457.93RL21, ribosomal protein 21, 60S large ribosomal su... [more]
gi|676393549|ref|XP_009040052.1|1.059e-5355.63hypothetical protein AURANDRAFT_66559 [Aureococcus... [more]
gi|676392517|ref|XP_009039536.1|1.144e-5355.63hypothetical protein AURANDRAFT_38325 [Aureococcus... [more]
gi|675188963|ref|XP_008903366.1|2.429e-5356.52hypothetical protein PPTG_10422 [Phytophthora para... [more]
gi|1183477265|gb|ORZ01215.1|5.953e-5356.7960S ribosomal protein L21-A [Syncephalastrum racem... [more]
gi|567993768|gb|ETL43938.1|7.654e-5355.90hypothetical protein L916_05640 [Phytophthora para... [more]
gi|301123509|ref|XP_002909481.1|1.238e-5255.9060S ribosomal protein L21-1 [Phytophthora infestan... [more]
gi|695369778|ref|XP_009514141.1|2.210e-5256.17hypothetical protein PHYSODRAFT_320742 [Phytophtho... [more]
gi|1214708594|gb|OWZ19860.1|2.438e-5255.9060S ribosomal protein L21-1 [Phytophthora megakary... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7120rna7120Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications