EWM23571.1, cds7103 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23571.1 vs. NCBI_GenBank
Match: gi|585104703|gb|EWM23571.1| (60s ribosomal protein l21-a [Nannochloropsis gaditana]) HSP 1 Score: 327.791 bits (839), Expect = 1.188e-113 Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0
Query: 1 MPHSYGYRARTRSMFRRDFGEHGVNPLSIYMRNYKVGDVVDIKANPSIQKGMPFKGYHGRTGVVYNVTKRALGVEVNKLVNGKIIKKKINVRVEHLRPSTSRKEWIERVRQNELQKKAVKAGEKEYRELKRLPKAPKEAFTFKYDGEVQTVQAIPFVDLV 160
MPHSYGYRARTRSMFRRDFGEHGVNPLSIYMRNYKVGDVVDIKANPSIQKGMPFKGYHGRTGVVYNVTKRALGVEVNKLVNGKIIKKKINVRVEHLRPSTSRKEWIERVRQNELQKKAVKAGEKEYRELKRLPKAPKEAFTFKYDGEVQTVQAIPFVDLV
Sbjct: 1 MPHSYGYRARTRSMFRRDFGEHGVNPLSIYMRNYKVGDVVDIKANPSIQKGMPFKGYHGRTGVVYNVTKRALGVEVNKLVNGKIIKKKINVRVEHLRPSTSRKEWIERVRQNELQKKAVKAGEKEYRELKRLPKAPKEAFTFKYDGEVQTVQAIPFVDLV 160
BLAST of EWM23571.1 vs. NCBI_GenBank
Match: gi|224005290|ref|XP_002296296.1| (RL21, ribosomal protein 21, 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335] >gi|209586328|gb|ACI65013.1| RL21, ribosomal protein 21, 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 178.718 bits (452), Expect = 1.063e-54 Identity = 95/164 (57.93%), Postives = 118/164 (71.95%), Query Frame = 0
Query: 1 MPHSYGYRARTRSMFRRDFGEHGVNPLSIYMRNYKVGDVVDIKANPSIQKGMPFKGYHGRTGVVYNVTKRALGVEVNKLVNGKIIKKKINVRVEHLRPSTSRKEWIERVRQNELQK-KAVKAGEKEYRELKRLPKAPKEAFTFKY---DGEVQTVQAIPFVDLV 160
MPHS+G RARTR MF + F +HG LS Y + KVGD VDI ANPSI KGMP K YHGRTG+V+NVTK ++GV VNKLVNG+I++K+I+VR+EH+R S +KE I RV+ NEL K +A K G K +LKR PK PKE + DGE+ T+Q +PF DLV
Sbjct: 1 MPHSFGVRARTRHMFAKKFRDHGPLHLSQYFLSVKVGDYVDIFANPSIHKGMPHKHYHGRTGIVFNVTKSSVGVRVNKLVNGRILEKRIHVRIEHIRKSKCQKEIIARVKSNELAKAEARKTGVKV--DLKRHPKQPKEGYFLAAPGGDGEITTIQPLPFSDLV 162
BLAST of EWM23571.1 vs. NCBI_GenBank
Match: gi|676393549|ref|XP_009040052.1| (hypothetical protein AURANDRAFT_66559 [Aureococcus anophagefferens] >gi|323449261|gb|EGB05150.1| hypothetical protein AURANDRAFT_66559 [Aureococcus anophagefferens]) HSP 1 Score: 176.022 bits (445), Expect = 1.059e-53 Identity = 89/160 (55.62%), Postives = 111/160 (69.38%), Query Frame = 0
Query: 1 MPHSYGYRARTRSMFRRDFGEHGVNPLSIYMRNYKVGDVVDIKANPSIQKGMPFKGYHGRTGVVYNVTKRALGVEVNKLVNGKIIKKKINVRVEHLRPSTSRKEWIERVRQNE-LQKKAVKAGEKEYRELKRLPKAPKEAFTFKYDGEVQTVQAIPFVDL 159
MPHS+GYRARTR MF R F + G+ +S Y+ YK+GD VDIK NP+ KGMPFK +HGRTGV+YNVTKRA+GV + K VNG+II K +NVRVEH+ PS + + I RV +NE L+K+A ++G K LKR P PK F E T+Q IPF DL
Sbjct: 1 MPHSFGYRARTRDMFSRPFRQRGMIKMSTYLTTYKMGDYVDIKCNPAQVKGMPFKHFHGRTGVIYNVTKRAVGVRIAKQVNGRIINKHLNVRVEHVTPSKCQNDLIARVARNEKLKKEAKQSGTKV--TLKRQPTQPKAGFVITASEEPTTIQPIPFSDL 158
BLAST of EWM23571.1 vs. NCBI_GenBank
Match: gi|676392517|ref|XP_009039536.1| (hypothetical protein AURANDRAFT_38325 [Aureococcus anophagefferens] >gi|323449812|gb|EGB05697.1| hypothetical protein AURANDRAFT_38325 [Aureococcus anophagefferens]) HSP 1 Score: 176.022 bits (445), Expect = 1.144e-53 Identity = 89/160 (55.62%), Postives = 111/160 (69.38%), Query Frame = 0
Query: 1 MPHSYGYRARTRSMFRRDFGEHGVNPLSIYMRNYKVGDVVDIKANPSIQKGMPFKGYHGRTGVVYNVTKRALGVEVNKLVNGKIIKKKINVRVEHLRPSTSRKEWIERVRQNE-LQKKAVKAGEKEYRELKRLPKAPKEAFTFKYDGEVQTVQAIPFVDL 159
MPHS+GYRARTR MF R F + G+ +S Y+ YK+GD VDIK NP+ KGMPFK +HGRTGV+YNVTKRA+GV + K VNG+II K +NVRVEH+ PS + + I RV +NE L+K+A ++G K LKR P PK F E T+Q IPF DL
Sbjct: 1 MPHSFGYRARTRDMFSRPFRQRGMIKMSTYLTTYKMGDYVDIKCNPAQVKGMPFKHFHGRTGVIYNVTKRAVGVRIAKQVNGRIINKHLNVRVEHVTPSKCQNDLIARVARNEKLKKEAKQSGTKV--ALKRQPTQPKAGFVITASEEPTTIQPIPFSDL 158
BLAST of EWM23571.1 vs. NCBI_GenBank
Match: gi|675188963|ref|XP_008903366.1| (hypothetical protein PPTG_10422 [Phytophthora parasitica INRA-310] >gi|566027796|gb|ETI50707.1| hypothetical protein F443_05836 [Phytophthora parasitica P1569] >gi|567965055|gb|ETK90528.1| hypothetical protein L915_05703 [Phytophthora parasitica] >gi|568023074|gb|ETL97138.1| hypothetical protein L917_05526 [Phytophthora parasitica] >gi|568053466|gb|ETM50294.1| hypothetical protein L914_05643 [Phytophthora parasitica] >gi|568096837|gb|ETN11584.1| hypothetical protein PPTG_10422 [Phytophthora parasitica INRA-310] >gi|570331436|gb|ETO79384.1| hypothetical protein F444_05884 [Phytophthora parasitica P1976] >gi|570990417|gb|ETP48373.1| hypothetical protein F442_05879 [Phytophthora parasitica P10297] >gi|970631427|gb|KUF78036.1| 60S ribosomal protein L21-1 [Phytophthora nicotianae] >gi|970660763|gb|KUF98288.1| Dicarboxylate/Amino Acid:Cation (Na or H) Symporter (DAACS) family [Phytophthora nicotianae]) HSP 1 Score: 175.252 bits (443), Expect = 2.429e-53 Identity = 91/161 (56.52%), Postives = 115/161 (71.43%), Query Frame = 0
Query: 1 MPHSYGYRARTRSMFRRDFGEHGVNPLSIYMRNYKVGDVVDIKANPSIQKGMPFKGYHGRTGVVYNVTKRALGVEVNKLVNGKIIKKKINVRVEHLRPSTSRKEWIERVRQNELQKKAVKAGEKEYRELKRLPKAPKEAFTFKYDGEVQ-TVQAIPFVDLV 160
MPHS+GYRARTR MF R F + G+ +S Y+R +KVGD VDIKAN ++QKGMP K YHGRTG VYNVTKRA+GV VNK+V +II K INVR+EH+ S R ++ RV++NEL+KK +A ++KR P PKEA+T K G T+ A PFVDL+
Sbjct: 1 MPHSFGYRARTRDMFARPFRQSGMIKMSTYLRTFKVGDYVDIKANGAVQKGMPHKFYHGRTGRVYNVTKRAVGVRVNKIVGNRIIHKHINVRIEHVHQSKCRLGFLTRVKENELKKKEARATGVRA-QIKRTPVQPKEAYTLKTKGTKPITMAAQPFVDLM 160
BLAST of EWM23571.1 vs. NCBI_GenBank
Match: gi|1183477265|gb|ORZ01215.1| (60S ribosomal protein L21-A [Syncephalastrum racemosum]) HSP 1 Score: 174.481 bits (441), Expect = 5.953e-53 Identity = 92/162 (56.79%), Postives = 115/162 (70.99%), Query Frame = 0
Query: 1 MPHSYGYRARTRSMFRRDFGEHGVNPLSIYMRNYKVGDVVDIKANPSIQKGMPFKGYHGRTGVVYNVTKRALGVEVNKLVNGKIIKKKINVRVEHLRPSTSRKEWIERVRQNELQKKAVKA-GEKEYRELKRLPKAPKEA-FTFKYDGEVQTVQAIPFVDLV 160
MPHS+G RARTR MF R F EHG LS Y+ YKVGD+VDIKAN SIQ GMP K YHGRTGVVYNVTK A+GV +NK V + I+K++NVR+EH++ S R+E+++RV+ N +KK KA GEK LKR+P P+EA F D QT+Q IP+ L+
Sbjct: 1 MPHSFGLRARTRHMFSRKFREHGPTHLSTYLTTYKVGDIVDIKANASIQAGMPHKFYHGRTGVVYNVTKTAVGVLINKRVGNRYIEKRVNVRIEHVKHSKCRQEFLDRVKANAEKKKQAKASGEKV--NLKRIPVQPREARFVSTEDNVPQTIQPIPYETLL 160
BLAST of EWM23571.1 vs. NCBI_GenBank
Match: gi|567993768|gb|ETL43938.1| (hypothetical protein L916_05640 [Phytophthora parasitica] >gi|570955296|gb|ETP20482.1| hypothetical protein F441_05841 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 174.096 bits (440), Expect = 7.654e-53 Identity = 90/161 (55.90%), Postives = 116/161 (72.05%), Query Frame = 0
Query: 1 MPHSYGYRARTRSMFRRDFGEHGVNPLSIYMRNYKVGDVVDIKANPSIQKGMPFKGYHGRTGVVYNVTKRALGVEVNKLVNGKIIKKKINVRVEHLRPSTSRKEWIERVRQNELQKKAVKAGEKEYRELKRLPKAPKEAFTFKYDG-EVQTVQAIPFVDLV 160
MPHS+GYRARTR MF R F + G+ +S Y+R +KVGD VDIKAN ++QKGMP K YHGRTG VYNVTKRA+GV VNK+V +II K INVR+EH+ S R ++ RV++NEL+KK +A ++KR P PK+A+T K G + T+ A PFVDL+
Sbjct: 1 MPHSFGYRARTRDMFARPFRQSGMIKMSTYLRTFKVGDYVDIKANGAVQKGMPHKFYHGRTGRVYNVTKRAVGVRVNKIVGNRIIHKHINVRIEHVHQSKCRLGFLTRVKENELKKKEARATGVRA-QIKRTPVQPKDAYTLKTKGTKPITMAAQPFVDLM 160
BLAST of EWM23571.1 vs. NCBI_GenBank
Match: gi|301123509|ref|XP_002909481.1| (60S ribosomal protein L21-1 [Phytophthora infestans T30-4] >gi|262100243|gb|EEY58295.1| 60S ribosomal protein L21-1 [Phytophthora infestans T30-4]) HSP 1 Score: 173.326 bits (438), Expect = 1.238e-52 Identity = 90/161 (55.90%), Postives = 115/161 (71.43%), Query Frame = 0
Query: 1 MPHSYGYRARTRSMFRRDFGEHGVNPLSIYMRNYKVGDVVDIKANPSIQKGMPFKGYHGRTGVVYNVTKRALGVEVNKLVNGKIIKKKINVRVEHLRPSTSRKEWIERVRQNELQKKAVKAGEKEYRELKRLPKAPKEAFTFKYDG-EVQTVQAIPFVDLV 160
MPHS+GYRARTR MF R F + G+ +S Y+R +KVGD VDIKAN ++QKGMP K YHGRTG VYNVTKRA+GV VNK+V +II K INVR+EH+ S R ++ RV++NEL+KK +A ++KR P PK A+T K G + T+ A PFVDL+
Sbjct: 1 MPHSFGYRARTRDMFARPFRQSGMIKMSTYLRTFKVGDYVDIKANGAVQKGMPHKFYHGRTGRVYNVTKRAVGVRVNKIVGNRIIHKHINVRIEHVHQSKCRLGFLTRVKENELKKKEARATGVRA-QIKRTPGQPKAAYTLKAKGTKPITMAAQPFVDLM 160
BLAST of EWM23571.1 vs. NCBI_GenBank
Match: gi|695369778|ref|XP_009514141.1| (hypothetical protein PHYSODRAFT_320742 [Phytophthora sojae] >gi|348687052|gb|EGZ26866.1| hypothetical protein PHYSODRAFT_320742 [Phytophthora sojae]) HSP 1 Score: 172.94 bits (437), Expect = 2.210e-52 Identity = 91/162 (56.17%), Postives = 116/162 (71.60%), Query Frame = 0
Query: 1 MPHSYGYRARTRSMFRRDFGEHGVNPLSIYMRNYKVGDVVDIKANPSIQKGMPFKGYHGRTGVVYNVTKRALGVEVNKLVNGKIIKKKINVRVEHLRPSTSRKEWIERVRQNELQKKAVKA-GEKEYRELKRLPKAPKEAFTFKYDG-EVQTVQAIPFVDLV 160
MPHS+GYRARTR MF R F + G+ +S Y+R +KVGD VDIKAN ++QKGMP K YHGRTG VYNVTKRA+GV VNK+V +II K INVR+EH+ S R ++ RV++NEL+KK A G + ++KR P PK A+T K G + T+ A PFVDL+
Sbjct: 1 MPHSFGYRARTRDMFARPFRQSGMIKMSTYLRTFKVGDYVDIKANGAVQKGMPHKFYHGRTGRVYNVTKRAVGVRVNKIVGNRIIHKHINVRIEHVHQSKCRLGFLTRVKENELKKKEAHATGVRA--QIKRTPVQPKAAYTLKAKGTQPITMAAQPFVDLM 160
BLAST of EWM23571.1 vs. NCBI_GenBank
Match: gi|1214708594|gb|OWZ19860.1| (60S ribosomal protein L21-1 [Phytophthora megakarya]) HSP 1 Score: 172.94 bits (437), Expect = 2.438e-52 Identity = 90/161 (55.90%), Postives = 115/161 (71.43%), Query Frame = 0
Query: 1 MPHSYGYRARTRSMFRRDFGEHGVNPLSIYMRNYKVGDVVDIKANPSIQKGMPFKGYHGRTGVVYNVTKRALGVEVNKLVNGKIIKKKINVRVEHLRPSTSRKEWIERVRQNELQKKAVKAGEKEYRELKRLPKAPKEAFTFKYDG-EVQTVQAIPFVDLV 160
MPHS+GYRARTR MF R F + G+ +S Y+R +KVGD VDIKAN ++QKGMP K YHGRTG VYNVTKRA+GV VNK+V +II K INVR+EH+ S R ++ RV++NEL+KK +A ++KR P PK A+T K G + T+ A PFVDL+
Sbjct: 1 MPHSFGYRARTRDMFARPFRQSGMIKMSTYLRTFKVGDYVDIKANGAVQKGMPHKFYHGRTGRVYNVTKRAVGVRVNKVVGNRIIHKHINVRIEHVHQSKCRLGFLTRVKENELKKKEARATGVRA-QIKRTPVQPKAAYTLKTKGTKPITMAAQPFVDLM 160 The following BLAST results are available for this feature:
BLAST of EWM23571.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|