rna7118, rna7118 (mRNA) Nannochloropsis gaditana

Overview
Namerna7118
Unique Namerna7118
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1663
Alignment locationCM002470.1:489375..490701 +

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Properties
Property NameValue
Productstress regulated protein
Orig transcript idgnl|cribi|Naga_100638g1.3214.mrna
Orig protein idgnl|cribi|Naga_100638g1.3214
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:489375..490701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100638g1gene6883Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7118rna7118-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23569.1cds7101Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7118 ID=rna7118|Name=rna7118|organism=Nannochloropsis gaditana|type=mRNA|length=1663bp
AAATGTTTCACACCACCCTATCTCGCTGCGTTTACGTTCCATTTCCAAAC
ACCACGTCCCAACCTGACACCGTGTCAGCCGCATGGTTGGCTACACACAT
ACCCACCGAATGTCCCTAGCGCTGTGTGCGCGTGGTATAATAGCTTTGCG
TCCGAGGTATTCTTTCCTTGACGTGTCGTCGCTGGTTCCTCGCTCTCATC
GCCCCCCCTCCTGAGTCACAAGGCTAAAAATGCGAAAGTCGGAAGGCGCA
AATACACGTCTAAGGATGAATGTCTTGAACCCTCTCGTACATGTTCATAA
TTGGCGCAGGCTTTCGCAGGAAAGGGGACTTGCGTGACATCGCTGTGTTG
TACCCAGAAGAAATAGTGTGAGGAGTCAACGCCTCCTGCCGTGGTAGAAA
CAAGAAAAAGCACGACATCAGGCATTTGGACAAGACCCGTACGCCTTTAG
CCTACTATTACTTCAGCCTCGTACGCAGCCATGCACATATCACAATGGGC
GACGCAGCTTTTTGTTGCCATGGTGGCGACGTCGCATGCTTTTTTAGGTC
CGTCGACCACGCCCCTACTGCCACGTACCATCTCCACAACCCCTGTCCTT
CACTCTGGCAGCCGAGCTCTCTGCCGGCCCACGGCAGCTTTACCTCGTCA
GCCGTCGTTTTCCTTCTGTGCACCTCCTTCTCCCCCATACTCCCGTCTTC
ACGCGTCCCCAGCGCCCAAGGAGCCTGAGGAGAAAAAGGACGAGAAGGAA
GCGCAGCCTTCCGCCTCCTCGCCGCCCTCCCACGACTCAGCCGCCTCTGG
CCAAGACGTGTCGGCGCCAGACACCCGGTCCTATGATCTCGGCGAGGAGG
GCAGGCAGAAGGCGGGTCACGGGAACAGTGACGTGCAACGGAAATTTGAC
GCTTTGGTGGAGGAGGGGAAGGACCTGCTTGGCCTGGTTGACTACTTGAA
GTCCCATCAGACCGAAATCCACATCACCCGCCCCCAAGTATCCCTCATGT
TGGACAAACTCGCGGACACCCAGGTGGTCCGGGAGAATCTGATGGACAGG
CAGGCGAAGGGAGTGGTTCCGGTGCGGGAGAAAGGGATGGTTGCCAACCC
GAACGATTTCTTTCAAGCACCGGGTCGGGCCTTCATGCCTTTGGAAGAAT
TTCAGAAGGTCCAATTGGAGGCAATCACCGACACATACGCCATTTTGAAA
AGCAAAGGGTTGCTGCGCGGCTACGCCTGCATATCCGACCAACGTGGGTA
CTCCGAGAGCTACCTCTCCAAGAGCGTGGACGGGGACGTCATCGAGCAGC
GAACCGGAGGACTCCCCATGTCCGCCCTCACGCCCGGGCAGGCCCAGAAC
CTCTGGGCGTACTCCGGCGTGGCCCTGTGTGTGTTGGAGTTGGCCATCTG
CAAGTTCTACGGGGTGGACGCCGGCGCGGTCATTCCAGGGACTCTTCTGG
GCTTCTTTGTGGACCGGTTTTTGTTGGGGGGACGGGGCTTCGACGCCTTG
GCCCGCGTCGTCCTGCCCCGGTACAAGGAGCGGATCATTCGGCACGAGGC
GGGTCATTTCCTCCTGGCGCACTTGTTGGGGTGTCCGGTCCAGGACTGTG
TGCTGCGTCCCGTGTTTAACGGTAGGTGGGAAAAAGGGCACCGTCAGCCG
GGGGGGCGGGGGG
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protein sequence of rna7118

>rna7118-protein ID=rna7118-protein|Name=rna7118|organism=Nannochloropsis gaditana|type=polypeptide|length=419bp
MWEAGEKEVRVAFWRWWVGWNVSYEGRKGPSDEGPASLFLPTHFCCGLFR
IPPHGRASFPSSGATFGEAGTIFLDQTLFEQLEKAKVSASSLDRYSTIVM
GGIAAEALTFQNAQGGSSDEQALILLMSLLGFPLDRISNQARWAALRAVL
VIKDYPEAYEALVAALQAGKSVGQCVLAIEDALEATDRPLVPLPAVGPPP
SPPPAPVPSSGAKEFADLQRVLMPSLPPSLANADLSNLTPSFTKGTDVIP
AVEAREKKQLAALEEQLKARQRAVNFRLKQVTAQLEGKSPEEVSGMGGEE
EIQGKIELRGEEMDEEKEIEDQLKSLDEKLKALNMQLGGRVGEGTWEEGG
GRDKRMGRRGAGRGVVDKGVGNKSAGKRMQEQGTKAYGRRRESRNSRLRM
SLLPFLFLALASRLRMHDR
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mRNA from alignment at CM002470.1:489375..490701+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7118 ID=rna7118|Name=rna7118|organism=Nannochloropsis gaditana|type=mRNA|length=1327bp|location=Sequence derived from alignment at CM002470.1:489375..490701+ (Nannochloropsis gaditana)
ATGTGGGAGGCTGGTGAGAAGGAAGTCAGGGTTGCGttttggaggtggtg
ggTGGGGTGGAACGTGTCGTacgagggcaggaagggtcCGAGTGATGAAG
GCCCAGCCTCGTTGTTTCTGCCGACTCACTTCTGTTGTGGTCTCTTTCGC
ATACCCCCGCATGGACGGGCCTCATTCCCCTCTTCAGGCGCCACCtttgg
ggaggcggggaccaTTTTTTTGGATCAAACCCTCTTTGAGCAACTGGAAA
AAGCGAAGGTATCCGCCTCTTCCCTGGACCGATACTCGACGATTGTTATG
GGAGGGATTGCCGCGGAGGCCCTGACCTTCCAGAATGCCCAAGGGGGGAG
CAGCGACGAGCAGGCTCTTATCCTCTTGATGAGCCTGCTTGGCTTTCCCC
TCGACCGGATTTCGAACCAGGCCCGTTGGGCCGCCCTGCGAGCCGTGTTG
GTCATCAAAGACTACCCGGAAGCTTACGAGGCCCTGGTCGCGGCGTTGCA
GGCGGGGAAGTCCGTGGGGCAGTGCGTGCTAGCCATTGAAGACGCCCTGG
AAGCCACCGACAGGCCCTTGGTCCCATTACCGGCCGtaggcccccccccc
tccccgccccccgcccctgtcccctcctccggcgccaAAGAATTCGCAGA
CCTACAACGCGTcctcatgccctccctccctccctccctggccaacGCGG
ACCTCTCCAACCTGACGCCGTCCTTCACAAAGGGCACCGACGTCATCCCG
GCGGTCGAAGcccgggagaagaagcaacTCGCCGCGTTGGAAGAGCAACT
GAAAGCCCGACAAAGGGCGGTTAATTTTCGGTTGAAACAAGTAACGGCAC
AACTCGAGGGCAAATCCCCCGAAGAAGTTTCGGGGATgggtggagaagag
gagattCAAGGAAAGATTGAactgcggggggaggagatggacgaagagaa
ggagattGAGGATCAATTAAAGTCTCTAGATGAGAAACTGAAAGCTCTCA
ACATGCAACTCGGGGGtcgggtgggggaggggacctgggaggaaggaggg
gggcgcgaTAAAAGGATGGGCCGTCGGGGAGCCGGGAGGGGTGTTGTAGA
TAAGGGCGTGGGGAACAAGTCGGCAGGAAAGAGAATGCAGGAGCAGGGAA
CCAAGGCGTACGGGCGACGGAGAGAGAGCCGGAATTCGAGGTTGCGAATG
AGTCTGCTGccgtttctcttcctcgccttggCCTCGCGTCTAAGAATGCA
TGATAGATAAATGAATTACCGGGAAACGATACAGTTGAGAACGCAGCTCT
TCTCTATTAATTGTCCCTTTCATTCCC
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Coding sequence (CDS) from alignment at CM002470.1:489375..490701+

>rna7118 ID=rna7118|Name=rna7118|organism=Nannochloropsis gaditana|type=CDS|length=1260bp|location=Sequence derived from alignment at CM002470.1:489375..490701+ (Nannochloropsis gaditana)
ATGTGGGAGGCTGGTGAGAAGGAAGTCAGGGTTGCGttttggaggtggtg
ggTGGGGTGGAACGTGTCGTacgagggcaggaagggtcCGAGTGATGAAG
GCCCAGCCTCGTTGTTTCTGCCGACTCACTTCTGTTGTGGTCTCTTTCGC
ATACCCCCGCATGGACGGGCCTCATTCCCCTCTTCAGGCGCCACCtttgg
ggaggcggggaccaTTTTTTTGGATCAAACCCTCTTTGAGCAACTGGAAA
AAGCGAAGGTATCCGCCTCTTCCCTGGACCGATACTCGACGATTGTTATG
GGAGGGATTGCCGCGGAGGCCCTGACCTTCCAGAATGCCCAAGGGGGGAG
CAGCGACGAGCAGGCTCTTATCCTCTTGATGAGCCTGCTTGGCTTTCCCC
TCGACCGGATTTCGAACCAGGCCCGTTGGGCCGCCCTGCGAGCCGTGTTG
GTCATCAAAGACTACCCGGAAGCTTACGAGGCCCTGGTCGCGGCGTTGCA
GGCGGGGAAGTCCGTGGGGCAGTGCGTGCTAGCCATTGAAGACGCCCTGG
AAGCCACCGACAGGCCCTTGGTCCCATTACCGGCCGtaggcccccccccc
tccccgccccccgcccctgtcccctcctccggcgccaAAGAATTCGCAGA
CCTACAACGCGTcctcatgccctccctccctccctccctggccaacGCGG
ACCTCTCCAACCTGACGCCGTCCTTCACAAAGGGCACCGACGTCATCCCG
GCGGTCGAAGcccgggagaagaagcaacTCGCCGCGTTGGAAGAGCAACT
GAAAGCCCGACAAAGGGCGGTTAATTTTCGGTTGAAACAAGTAACGGCAC
AACTCGAGGGCAAATCCCCCGAAGAAGTTTCGGGGATgggtggagaagag
gagattCAAGGAAAGATTGAactgcggggggaggagatggacgaagagaa
ggagattGAGGATCAATTAAAGTCTCTAGATGAGAAACTGAAAGCTCTCA
ACATGCAACTCGGGGGtcgggtgggggaggggacctgggaggaaggaggg
gggcgcgaTAAAAGGATGGGCCGTCGGGGAGCCGGGAGGGGTGTTGTAGA
TAAGGGCGTGGGGAACAAGTCGGCAGGAAAGAGAATGCAGGAGCAGGGAA
CCAAGGCGTACGGGCGACGGAGAGAGAGCCGGAATTCGAGGTTGCGAATG
AGTCTGCTGccgtttctcttcctcgccttggCCTCGCGTCTAAGAATGCA
TGATAGATAA
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Synonyms
Publications