rna7117, rna7117 (mRNA) Nannochloropsis gaditana

Overview
Namerna7117
Unique Namerna7117
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length297
Alignment locationCM002470.1:487605..489267 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101506g2.8306.mrna
Orig protein idgnl|cribi|Naga_101506g2.8306
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:487605..489267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101506g2gene6882Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7117rna7117-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23573.1cds7100Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7117 ID=rna7117|Name=rna7117|organism=Nannochloropsis gaditana|type=mRNA|length=297bp
ATGGCCCATTTACGCCCAGCTTCGTCTGTGCCTGCGTCAAGAAGACCATT
GACGGAGTGTTTTGTCTCTTGCACAGTCCATCGCAGTCTTCTTTACCTCC
AGGACAGTATTATGGTGGTACCATCAGAGGACATAACGCTTCAACATGCC
ATTGACCTCTTTCGCGAGGCGTACGGAAGCGATCCTGACATCGCAGCCTA
TGCACCGGGACGTGTCAATTTGATAGGGGAGCACACGGACTACAACGACG
GCTTCGTCTTTCCTTTAGCTTTAGACCTCCGTACCTTTCGGCCTTGA
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protein sequence of rna7117

>rna7117-protein ID=rna7117-protein|Name=rna7117|organism=Nannochloropsis gaditana|type=polypeptide|length=394bp
MHISQWATQLFVAMVATSHAFLGPSTTPLLPRTISTTPVLHSGSRALCRP
TAALPRQPSFSFCAPPSPPYSRLHASPAPKEPEEKKDEKEAQPSASSPPS
HDSAASGQDVSAPDTRSYDLGEEGRQKAGHGNSDVQRKFDALVEEGKDLL
GLVDYLKSHQTEIHITRPQVSLMLDKLADTQVVRENLMDRQAKGVVPVRE
KGMVANPNDFFQAPGRAFMPLEEFQKVQLEAITDTYAILKSKGLLRGYAC
ISDQRGYSESYLSKSVDGDVIEQRTGGLPMSALTPGQAQNLWAYSGVALC
VLELAICKFYGVDAGAVIPGTLLGFFVDRFLLGGRGFDALARVVLPRYKE
RIIRHEAGHFLLAHLLGCPVQDCVLRPVFNGRWEKGHRQPGGRG
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mRNA from alignment at CM002470.1:487605..489267+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7117 ID=rna7117|Name=rna7117|organism=Nannochloropsis gaditana|type=mRNA|length=1663bp|location=Sequence derived from alignment at CM002470.1:487605..489267+ (Nannochloropsis gaditana)
AAATGTTTCACACCACCCTATCTCGCTGCGTTTACGTTCCATTTCCAAAC
ACCACGTCCCAACCTGACACCGTGTCAGCCGCATGGTTGGCTACACACAT
ACCCACCGAATGTCCCTAGCGCTGTGTGCGCGTGGTATAATAGCTTTGCG
TCCGAGGTATTCTTTCCTTGACGTGTCGTCGCTGGTTCCTCGCTCTcatc
gccccccctcctgagTCACAAGGCTAAAAATGCGAAAGTCGGAAGGCGCA
AATACACGTCTAAGGATGAATGTCTTGAACCCTCTCGTACATGTTCATAA
TTGGCGCAGGCTTTCGCAGGAAAGGGGACTTGCGTGACATCGCTGTGTTG
TACCCAGAAGAAATAGTGTGAGGAGTCAACGCCTCCTGCCGTGGTAGAAA
CAAGAAAAAGCACGACATCAGGCATTTGGACAAGACCCGTACGCCTTTAG
CCTACTATTACTTCAGCCTCGTACGCAGCCATGCACATATCACAATGGGC
GACGCAGCTTTTTGTTGCCATGGTGGCGACGTCGCATGCTTTTTTAGGTC
CGTCGACCACGCCCCTACTGCCACGTACCATCTCCACAACCCCTGTCCTT
CACTCTGGCAGCCGAGCTCTCTGCCGGCCCACGGCAGCTTTACCTCGTCA
GCCGTCGTTTTCCTTCTGtgcacctccttctcccccataCTCCCGTCTTC
ACGCGTCCCCAGCGCCCAAGGAGcctgaggagaaaaaggacgagaaggaa
gcgcagccttccgcctcctcgccgccctcccacgACTCAGCCGCCTCTGG
CCAAGACGTGTCGGCGCCAGACACCCGGTCCTATGAtctcggcgaggagg
gcaggcagAAGGCGGGTCACGGGAACAGTGACGTGCAACGGAAATTTGAC
gctttggtggaggaggggaaggacctgCTTGGCCTGGTTGACTACTTGAA
GTCCCATCAGACCGAAATCCACATCACCCGCCCCCAAGTATCCCTCATGT
TGGACAAACTCGCGGACACCCAGGTGGTCCGGGAGAATCTGATGGACAGG
CAGGCGAAGGGAGTGGTTCCggtgcgggagaaagggatggtTGCCAACCC
GAACGATTTCTTTCAAGCACCGGGTCGGGCCTTCATGCCTTTGGAAGAAT
TTCAGAAGGTCCAATTGGAGGCAATCACCGACACATACGCCATTTTGAAA
AGCAAAGGGTTGCTGCGCGGCTACGCCTGCATATCCGACCAACGTGGGTA
CTCCGAGAGCTACCTCTCCAAGAGCGTGGACGGGGACGTCATCGAGCAGC
GAACCGGAGGACTCCCCATGTCCGCCCTCACGCCCGGGCAGGCCCAGAAC
CTCTGGGCGTACTCCGGCGTGGCCCTGTGTGTGTTGGAGTTGGCCATCTG
CAAGTTCTACGGGGTGGACGCCGGCGCGGTCATTCCAGGGACTCTTCTGG
GCTTCTTTGTGGACCGGTTTTTGTTGGGGGGACGGGGCTTCGACGCCTTG
GCCCGCGTCGTCCTGCCCCGGTACAAGGAGCGGATCATTCGGCACGAGGC
GGGTCATTTCCTCCTGGCGCACTTGTTGGGGTGTCCGGTCCAGGACTGTG
TGCTGCGTCCCGTGTTTAACGGTAGGTGGGAAAAAGGGCACCGTcagccg
ggggggcgggggg
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Coding sequence (CDS) from alignment at CM002470.1:487605..489267+

>rna7117 ID=rna7117|Name=rna7117|organism=Nannochloropsis gaditana|type=CDS|length=1183bp|location=Sequence derived from alignment at CM002470.1:487605..489267+ (Nannochloropsis gaditana)
ATGCACATATCACAATGGGCGACGCAGCTTTTTGTTGCCATGGTGGCGAC
GTCGCATGCTTTTTTAGGTCCGTCGACCACGCCCCTACTGCCACGTACCA
TCTCCACAACCCCTGTCCTTCACTCTGGCAGCCGAGCTCTCTGCCGGCCC
ACGGCAGCTTTACCTCGTCAGCCGTCGTTTTCCTTCTGtgcacctccttc
tcccccataCTCCCGTCTTCACGCGTCCCCAGCGCCCAAGGAGcctgagg
agaaaaaggacgagaaggaagcgcagccttccgcctcctcgccgccctcc
cacgACTCAGCCGCCTCTGGCCAAGACGTGTCGGCGCCAGACACCCGGTC
CTATGAtctcggcgaggagggcaggcagAAGGCGGGTCACGGGAACAGTG
ACGTGCAACGGAAATTTGACgctttggtggaggaggggaaggacctgCTT
GGCCTGGTTGACTACTTGAAGTCCCATCAGACCGAAATCCACATCACCCG
CCCCCAAGTATCCCTCATGTTGGACAAACTCGCGGACACCCAGGTGGTCC
GGGAGAATCTGATGGACAGGCAGGCGAAGGGAGTGGTTCCggtgcgggag
aaagggatggtTGCCAACCCGAACGATTTCTTTCAAGCACCGGGTCGGGC
CTTCATGCCTTTGGAAGAATTTCAGAAGGTCCAATTGGAGGCAATCACCG
ACACATACGCCATTTTGAAAAGCAAAGGGTTGCTGCGCGGCTACGCCTGC
ATATCCGACCAACGTGGGTACTCCGAGAGCTACCTCTCCAAGAGCGTGGA
CGGGGACGTCATCGAGCAGCGAACCGGAGGACTCCCCATGTCCGCCCTCA
CGCCCGGGCAGGCCCAGAACCTCTGGGCGTACTCCGGCGTGGCCCTGTGT
GTGTTGGAGTTGGCCATCTGCAAGTTCTACGGGGTGGACGCCGGCGCGGT
CATTCCAGGGACTCTTCTGGGCTTCTTTGTGGACCGGTTTTTGTTGGGGG
GACGGGGCTTCGACGCCTTGGCCCGCGTCGTCCTGCCCCGGTACAAGGAG
CGGATCATTCGGCACGAGGCGGGTCATTTCCTCCTGGCGCACTTGTTGGG
GTGTCCGGTCCAGGACTGTGTGCTGCGTCCCGTGTTTAACGGTAGGTGGG
AAAAAGGGCACCGTcagccgggggggcgggggg
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Synonyms
Publications