EWM23573.1, cds7100 (CDS) Nannochloropsis gaditana

Overview
NameEWM23573.1
Unique Namecds7100
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:488085..489267 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23573.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101506g2.8306.mrna
GbkeyCDS
End range.
End range489267
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:488085..489267 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM23573.1 vs. NCBI_GenBank
Match: gi|585104706|gb|EWM23573.1| (hypothetical protein Naga_101506g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 811.987 bits (2096), Expect = 0.000e+0
Identity = 394/394 (100.00%), Postives = 394/394 (100.00%), Query Frame = 0
Query:    1 MHISQWATQLFVAMVATSHAFLGPSTTPLLPRTISTTPVLHSGSRALCRPTAALPRQPSFSFCAPPSPPYSRLHASPAPKEPEEKKDEKEAQPSASSPPSHDSAASGQDVSAPDTRSYDLGEEGRQKAGHGNSDVQRKFDALVEEGKDLLGLVDYLKSHQTEIHITRPQVSLMLDKLADTQVVRENLMDRQAKGVVPVREKGMVANPNDFFQAPGRAFMPLEEFQKVQLEAITDTYAILKSKGLLRGYACISDQRGYSESYLSKSVDGDVIEQRTGGLPMSALTPGQAQNLWAYSGVALCVLELAICKFYGVDAGAVIPGTLLGFFVDRFLLGGRGFDALARVVLPRYKERIIRHEAGHFLLAHLLGCPVQDCVLRPVFNGRWEKGHRQPGGRG 394
            MHISQWATQLFVAMVATSHAFLGPSTTPLLPRTISTTPVLHSGSRALCRPTAALPRQPSFSFCAPPSPPYSRLHASPAPKEPEEKKDEKEAQPSASSPPSHDSAASGQDVSAPDTRSYDLGEEGRQKAGHGNSDVQRKFDALVEEGKDLLGLVDYLKSHQTEIHITRPQVSLMLDKLADTQVVRENLMDRQAKGVVPVREKGMVANPNDFFQAPGRAFMPLEEFQKVQLEAITDTYAILKSKGLLRGYACISDQRGYSESYLSKSVDGDVIEQRTGGLPMSALTPGQAQNLWAYSGVALCVLELAICKFYGVDAGAVIPGTLLGFFVDRFLLGGRGFDALARVVLPRYKERIIRHEAGHFLLAHLLGCPVQDCVLRPVFNGRWEKGHRQPGGRG
Sbjct:    1 MHISQWATQLFVAMVATSHAFLGPSTTPLLPRTISTTPVLHSGSRALCRPTAALPRQPSFSFCAPPSPPYSRLHASPAPKEPEEKKDEKEAQPSASSPPSHDSAASGQDVSAPDTRSYDLGEEGRQKAGHGNSDVQRKFDALVEEGKDLLGLVDYLKSHQTEIHITRPQVSLMLDKLADTQVVRENLMDRQAKGVVPVREKGMVANPNDFFQAPGRAFMPLEEFQKVQLEAITDTYAILKSKGLLRGYACISDQRGYSESYLSKSVDGDVIEQRTGGLPMSALTPGQAQNLWAYSGVALCVLELAICKFYGVDAGAVIPGTLLGFFVDRFLLGGRGFDALARVVLPRYKERIIRHEAGHFLLAHLLGCPVQDCVLRPVFNGRWEKGHRQPGGRG 394          
BLAST of EWM23573.1 vs. NCBI_GenBank
Match: gi|298705023|emb|CBJ28498.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 111.694 bits (278), Expect = 4.747e-23
Identity = 64/151 (42.38%), Postives = 87/151 (57.62%), Query Frame = 0
Query:  232 ITDTYAILKSKGLLRGYACISDQRGYSESYLSKSVDGDVIEQRTGGLPMSALTPGQAQNLWAYSGVALCVLELAICKFYGVD-AGAVIPGTLLGFFVDRFLLGGRGFDALARVVLPRYKERIIRHEAGHFLLAHLLGCPVQDCVLRPVFNG 381
            +T+TY  LK+ GLLRG+  I   +G S    S+ V  + +   +G +    L PG+    W  +GV +   E       G+D    VIP TL   F DR LL G   ++L R+++P Y+ERIIRHEAGHFL+A+LLGCPVQ C+L P   G
Sbjct:  172 LTNTYNALKAAGLLRGFGSIDFSKGPSSQ--SRDVSAEKLLSLSG-VEKQNLAPGRPTGSWLAAGVGVFGAEYLAGILMGLDPLQTVIPWTLGLIFADRLLLNGALSESLTRLIVPAYRERIIRHEAGHFLVAYLLGCPVQACLLDPFVLG 319          
BLAST of EWM23573.1 vs. NCBI_GenBank
Match: gi|551656823|ref|XP_005831184.1| (hypothetical protein GUITHDRAFT_87555, partial [Guillardia theta CCMP2712] >gi|428175313|gb|EKX44204.1| hypothetical protein GUITHDRAFT_87555, partial [Guillardia theta CCMP2712])

HSP 1 Score: 98.9821 bits (245), Expect = 1.798e-19
Identity = 48/97 (49.48%), Postives = 62/97 (63.92%), Query Frame = 0
Query:  280 MSALTPGQAQNLWAYSGVALCVLELAICKFYGVD-AGAVIPGTLLGFFVDRFLLGGRGFDALARVVLPRYKERIIRHEAGHFLLAHLLGCPVQDCVL 375
            MSALTP  AQ  W  +G+ LC +E  +    G+D    VIP T   F VDR L  G  F++  R + P+YKE++I+HEAGHFLLA+LLGCP+Q   L
Sbjct:    1 MSALTPKNAQYGWLAAGLGLCTVEYFLALNAGLDPLRTVIPFTAFLFVVDRLLTSGAAFESAYRFLFPKYKEKVIKHEAGHFLLAYLLGCPIQGFFL 97          
BLAST of EWM23573.1 vs. NCBI_GenBank
Match: gi|223998690|ref|XP_002289018.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976126|gb|EED94454.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 89.7373 bits (221), Expect = 7.356e-16
Identity = 73/244 (29.92%), Postives = 120/244 (49.18%), Query Frame = 0
Query:  145 EGKDLLGLVDYLKSHQTEI-HITRPQVSLMLDKL-ADTQVVRENLMDRQAKGVVPVREKGMVANPNDFFQAPGRAFMPLEEFQKVQLEAITDTYAILKSKGLLRGYACISDQRGYSESYL-----------SKSVDGDVIEQRTGGLPMSALTPGQAQNLWAYSGVALCVLELAICKFYGVDAGAVIPGTLLGFFVDRFLLGGRGFDALARVVLPRYKERIIRHEAGHFLLAHLLGCPVQDCVL 375
            E  +L  L+ +LKS+ + I ++T  Q++ + D +   T    EN ++++A       E   + +          A +      +V+ + +T  Y +L+  G L  +  I  +   S  +            SK +  +++EQ TG + M  LTP +  NL  Y G AL VLE  +  +  ++   ++  TLL   +D+ L+ G  F+   R+VLP  K RI +HEAGHFL A+LLGCPV+  VL
Sbjct:   91 ESNNLQALISHLKSNPSSIPNLTNAQLTSIFDAIEVATAETDENTVNKRAI------EDATLISATSSSSKGSNADVEFRSLDRVRSQ-MTQLYQLLREGGQLNVFGAIGRKPPSSSKFATPEGPIYPTMGSKIITPNLLEQITG-MEMINLTP-RPTNLLLYGGAALAVLEGILSLYLHINFNLLVFCTLLLALLDQVLVSGAVFETGLRMVLPEMKTRITKHEAGHFLCAYLLGCPVEGVVL 325          
BLAST of EWM23573.1 vs. NCBI_GenBank
Match: gi|1210531724|dbj|GAX09691.1| (hypothetical protein FisN_19Lh158 [Fistulifera solaris])

HSP 1 Score: 88.1965 bits (217), Expect = 2.395e-15
Identity = 72/244 (29.51%), Postives = 116/244 (47.54%), Query Frame = 0
Query:  132 NSDVQRKFDALVEEGKDLLGLVDYLKSHQTEIHITRPQVSLMLDKLADTQVVRENLMDRQAKGVVPVREKGMVANPNDFFQAPGRAFMPLEEFQKVQLEAITDTYAILKSKGLLRGYACISDQRGYSESYLSKSVDGDVIEQRTGGLPMSALTPGQAQNLWAYSGVALCVLELAICKFYGVDAGAVIPGTLLGFFVDRFLLGGRGFDALARVVLPRYKERIIRHEAGHFLLAHLLGCPVQDCVL 375
            N++   +FD+L+++ K L   V +L+ H                   DT + +    DR  K    + E+   A  N       RA  PLE   + ++ A+   Y  L+ +  L+ Y  +S     + +  S S+   V+E+   GLPM ALTP     +W  +GV    +E  +    G+D  A++  TLLG  +DR LL G  F+   ++  P  +++I++HEA H   A+LLGCPV+  VL
Sbjct:   58 NTNDASQFDSLLDQVK-LREAVTFLRQH------------------PDTPLTK----DRWIKIFTAIEERTRNAEENT---ENLRADFPLESAARNEMTAM---YQTLRDQNHLQLYGAVS-----TMTEGSHSIPPPVMEE-ILGLPMQALTPQATNTIW-IAGVLTATVEAFVSLASGIDFNALVLLTLLGAAMDRILLNGALFETYLKLFSPGVQQKILKHEANHLFAAYLLGCPVEGIVL 265          
BLAST of EWM23573.1 vs. NCBI_GenBank
Match: gi|1210521590|dbj|GAX19580.1| (hypothetical protein FisN_19Hh158 [Fistulifera solaris])

HSP 1 Score: 87.4261 bits (215), Expect = 3.727e-15
Identity = 61/187 (32.62%), Postives = 93/187 (49.73%), Query Frame = 0
Query:  189 DRQAKGVVPVREKGMVANPNDFFQAPGRAFMPLEEFQKVQLEAITDTYAILKSKGLLRGYACISDQRGYSESYLSKSVDGDVIEQRTGGLPMSALTPGQAQNLWAYSGVALCVLELAICKFYGVDAGAVIPGTLLGFFVDRFLLGGRGFDALARVVLPRYKERIIRHEAGHFLLAHLLGCPVQDCVL 375
            DR  K    + E+   A  N       RA  PLE   + ++ A+   Y  L+ +  L+ Y  +S     + +  S S+   V+E+   GLPM ALTP     +W  +GV    +E       G+D  A++  TLLG  +DR LL G  F+   ++  P  +++I++HEA H   A+LLGCPV+  VL
Sbjct:   92 DRWNKIFTAIEERTRNAEEN---TENLRADFPLESAARNEMTAM---YQTLRDQNHLQLYGAVS-----TMTAGSHSIPPPVMEE-ILGLPMQALTPQATNTIW-IAGVLTATVEALASLASGIDFNALVLLTLLGAVLDRILLNGAIFETYLKLFSPGVQQKILKHEANHLFAAYLLGCPVEGIVL 265          
BLAST of EWM23573.1 vs. NCBI_GenBank
Match: gi|1189394386|gb|OSX81269.1| (hypothetical protein BU14_0023s0074 [Porphyra umbilicalis])

HSP 1 Score: 80.8777 bits (198), Expect = 5.098e-13
Identity = 53/147 (36.05%), Postives = 78/147 (53.06%), Query Frame = 0
Query:  232 ITDTYAILKSKGLLRGYACISDQRGYSESYLSKSVDGDVIEQRTGGLPMSALTPGQAQN-LWAYSGVALCVLELAICKFYGVDAGA--VIPGTLLGFFVDRFLLGGRGFDALARVVLPRYKERIIRHEAGHFLLAHLLGCPVQDCVL 375
            +T  YA L+ +G L  + C ++    +     K VD   +E R G LP+SAL P ++    W  +G+ + V   A+    GV   A   +    LG+  D+ L  G  F+ L R V P Y E++++HEAGHFLLA+L G PV+  VL
Sbjct:  131 VTLLYAELQKRGHLAAFGCAAE--AGTRPLGPKVVDAADLEARAG-LPISALAPKRSTGAWWQLAGIGVVVGVNALASAAGVQGLAQPALAVLFLGWVADQRLARGAVFETLYRAVKPEYAEKVLKHEAGHFLLAYLTGAPVRGYVL 274          
BLAST of EWM23573.1 vs. NCBI_GenBank
Match: gi|397570891|gb|EJK47513.1| (hypothetical protein THAOC_33760 [Thalassiosira oceanica])

HSP 1 Score: 79.7221 bits (195), Expect = 1.565e-12
Identity = 66/237 (27.85%), Postives = 115/237 (48.52%), Query Frame = 0
Query:  152 LVDYLKSHQTEIH-ITRPQVSLMLDKLADTQVVRE-NLMDRQAKGVVPVREKGMVANPNDFFQAPGRAFMPLEEFQKVQLEAITDTYAILKSKGLLRGYACISD-----------QRGYSESYLSKSVDGDVIEQRTGGLPMSALTPGQAQNLWAYSGVALCVLELAICKFYGVDAGAVIPGTLLGFFVDRFLLGGRGFDALARVVLPRYKERIIRHEAGHFLLAHLLGCPVQDCVL 375
            ++ YL+S+++ I  ++R Q+  + D +       E N +++++   V V       N  +F           +   KV+ E +T  Y +L+ +G L  +  I              R    +  SK +   ++E+ T  L M +LTP ++ N   Y+G AL +LE  I   + + +  ++  T++   +D+ L+ G  F+   R+V P    RI +HEAGHFL A+LLGCPV+  VL
Sbjct:   70 ILKYLQSNRSCIQSLSRAQIQSIFDSVESATAESETNTVNKRSIQDVAVE------NAVEF-----------QALDKVRSE-MTKMYRLLREEGRLNVFGAIGRLPPQSSGLPPPDRPIFPADGSKIITPTLLEEITN-LKMLSLTP-ESTNFLLYAGSALAILEGIISLNFDISSNLLVSVTIVLALMDQILVSGAVFETGLRMVNPSLTTRITKHEAGHFLCAYLLGCPVEGVVL 286          
BLAST of EWM23573.1 vs. NCBI_GenBank
Match: gi|545708098|ref|XP_005706362.1| (hypothetical protein isoform 1 [Galdieria sulphuraria] >gi|452822826|gb|EME29842.1| hypothetical protein isoform 1 [Galdieria sulphuraria])

HSP 1 Score: 75.8702 bits (185), Expect = 1.724e-11
Identity = 46/149 (30.87%), Postives = 84/149 (56.38%), Query Frame = 0
Query:  232 ITDTYAILKSKGLLRGYACISDQRGYSESYLSKSVDGDVIEQRTGGLPMSALTPGQAQNLWAY--SGVALCVLELAICKFYGVDAGAVIP---GTLLGFFVDRFLLGGRGFDALARVVLPRYKERIIRHEAGHFLLAHLLGCPVQDCVL 375
            + + Y  LK K  L+ ++ I  +    E   SK +  D + + T  +P+ AL P ++Q++++Y  +GV   +  +     + ++   + P     L+GF  D+  L G  F+ L + + P YK+++++HEAGHFL+++LLGCPV+  VL
Sbjct:  106 VAEVYDELKKKNCLKAFSVIDSEEKLPEP--SKQIGLDKLVE-TAKIPLEALRP-RSQSIFSYQLAGVVFSLSLIFFSHLFHIE-NIIRPIGISLLVGFLCDQIALQGAIFEELYKNLFPIYKKKVLKHEAGHFLVSYLLGCPVRGIVL 249          
BLAST of EWM23573.1 vs. NCBI_GenBank
Match: gi|873236176|emb|CEL99411.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 71.633 bits (174), Expect = 4.614e-10
Identity = 43/147 (29.25%), Postives = 75/147 (51.02%), Query Frame = 0
Query:  232 ITDTYAILKSKGLLRGYACISDQRGY---SESYLSKSVDGDVIEQRTGGLPMSALTPGQAQNLWAYSGVALCVLELAICKFYGVDAGAVIPGTLLGFFVDRFLLGGRGFDALARVVLPRYKERIIRHEAGHFLLAHLLGCPVQDCVL 375
            I+  + IL   G L+GY        +    ++  +  +    IE+ T    +  LTP  +   W+ +GVA  + ++A+     ++   ++P       VD         +++ARVV P Y+ERI++HEAGHFL+ +LLG P+Q C++
Sbjct:   78 ISHLFRILSEAGALKGYGLCGTSGCWPVAGQAETNVELQNANIEKYTN-FTIDKLTPKGSGVFWSVAGVAFALAQIALLPPETLNI--LVPLECGVVLVDSLFFRSVLSESVARVVFPPYQERIVKHEAGHFLIGYLLGAPIQRCIV 221          
The following BLAST results are available for this feature:
BLAST of EWM23573.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104706|gb|EWM23573.1|0.000e+0100.00hypothetical protein Naga_101506g2, partial [Nanno... [more]
gi|298705023|emb|CBJ28498.1|4.747e-2342.38conserved unknown protein [Ectocarpus siliculosus][more]
gi|551656823|ref|XP_005831184.1|1.798e-1949.48hypothetical protein GUITHDRAFT_87555, partial [Gu... [more]
gi|223998690|ref|XP_002289018.1|7.356e-1629.92predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1210531724|dbj|GAX09691.1|2.395e-1529.51hypothetical protein FisN_19Lh158 [Fistulifera sol... [more]
gi|1210521590|dbj|GAX19580.1|3.727e-1532.62hypothetical protein FisN_19Hh158 [Fistulifera sol... [more]
gi|1189394386|gb|OSX81269.1|5.098e-1336.05hypothetical protein BU14_0023s0074 [Porphyra umbi... [more]
gi|397570891|gb|EJK47513.1|1.565e-1227.85hypothetical protein THAOC_33760 [Thalassiosira oc... [more]
gi|545708098|ref|XP_005706362.1|1.724e-1130.87hypothetical protein isoform 1 [Galdieria sulphura... [more]
gi|873236176|emb|CEL99411.1|4.614e-1029.25unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7117rna7117Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications